##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779784_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21612 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.89797334813992 23.0 12.0 32.0 12.0 34.0 2 22.41768461965575 23.0 12.0 33.0 12.0 34.0 3 22.74389228206552 23.0 11.0 33.0 11.0 34.0 4 23.28317601332593 23.0 12.0 33.0 12.0 34.0 5 21.173931149361465 21.0 11.0 33.0 11.0 34.0 6 24.18040903201925 26.0 12.0 34.0 11.0 38.0 7 24.529381824912086 26.0 12.0 36.0 11.0 38.0 8 24.54668702572645 26.0 11.0 36.0 11.0 38.0 9 24.49088469368869 26.0 11.0 37.0 11.0 38.0 10-11 23.71823523968166 24.5 11.5 34.0 11.0 38.0 12-13 23.629765870812513 25.5 11.0 35.5 11.0 38.0 14-15 22.959605774569685 23.0 11.0 34.0 11.0 38.0 16-17 22.99655284101425 23.0 11.0 34.0 11.0 38.0 18-19 22.847260781047567 22.5 11.0 34.0 11.0 38.0 20-21 23.04839903757172 23.0 11.0 34.0 10.5 38.0 22-23 23.10447899315195 22.5 11.0 35.0 10.5 38.0 24-25 23.35163335184157 23.0 11.0 35.0 10.0 38.0 26-27 22.683092726263187 22.5 11.0 34.0 10.0 38.0 28-29 22.67161761984083 22.0 11.0 34.0 10.5 38.0 30-31 22.657320007403293 21.5 11.0 34.5 11.0 38.0 32-33 22.947644826947993 22.5 11.0 35.5 11.0 38.0 34-35 23.140824541921155 23.0 11.0 35.5 11.0 38.0 36-37 22.9269618730335 22.5 11.0 34.0 11.0 38.0 38-39 22.714950027762356 21.0 11.0 34.0 11.0 38.0 40-41 22.727119193040906 22.0 11.0 34.0 11.0 38.0 42-43 22.92094669627984 22.5 11.0 34.5 11.0 38.0 44-45 23.053211178974642 23.0 11.0 34.5 11.0 38.0 46-47 22.86424208772904 22.0 11.0 34.5 11.0 38.0 48-49 22.610910605219324 21.5 11.0 34.0 11.0 38.0 50-51 22.41245604293911 21.0 11.0 34.0 11.0 38.0 52-53 22.85614473440681 23.0 11.0 34.0 11.0 38.0 54-55 22.760572829909307 22.5 11.0 34.0 11.0 38.0 56-57 22.634670553396262 22.0 11.0 34.0 11.0 38.0 58-59 22.51915602443087 21.5 11.0 34.0 11.0 38.0 60-61 22.859291134554876 23.0 11.0 34.0 11.0 38.0 62-63 22.532366277993706 21.5 11.0 34.0 11.0 38.0 64-65 22.463330557097912 22.0 11.0 34.0 11.0 38.0 66-67 22.850916157690172 22.5 11.0 34.0 11.0 38.0 68-69 22.742781787895616 22.5 11.0 34.0 10.5 38.0 70-71 22.635410882842866 22.5 11.0 34.0 11.0 38.0 72-73 22.329284656672222 21.5 11.0 34.0 10.0 38.0 74-75 22.516703683139 22.5 11.0 34.0 10.5 38.0 76 21.935915232278365 21.0 11.0 33.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 12 29.0 13 226.0 14 942.0 15 1732.0 16 2217.0 17 2484.0 18 2292.0 19 1931.0 20 1376.0 21 928.0 22 665.0 23 436.0 24 323.0 25 258.0 26 189.0 27 164.0 28 162.0 29 134.0 30 156.0 31 140.0 32 205.0 33 245.0 34 399.0 35 577.0 36 1121.0 37 2281.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.979640940218395 22.33481399222654 8.69887099759393 48.98667406996113 2 12.257079400333149 22.950212844715896 36.81750879141218 27.975198963538773 3 10.947621691652785 20.035165648713676 45.363686840644085 23.65352581898945 4 8.08347214510457 45.271145659818615 18.8321302979826 27.813251897094204 5 21.969276327965943 30.30723672034055 27.961317786414952 19.762169165278547 6 14.598371275217472 39.51045715343328 11.183601702757727 34.70756986859153 7 13.321302979826022 40.509901906348325 12.261706459374421 33.90708865445123 8 11.605738084220269 52.429430819065246 10.39796390559926 25.56686719111522 9 17.249676105867113 25.356283546178048 12.243198223209328 45.15084212474551 10-11 13.569164565162067 36.318626657103856 19.811211623441224 30.30099715429285 12-13 13.543401813807144 25.814362391264112 24.55348880251712 36.08874699241162 14-15 26.562246951854334 28.89202507924022 17.263956689725376 27.281771279180067 16-17 28.76179900055525 25.41180825467333 15.676476031834166 30.14991671293726 18-19 19.047288543401812 24.571997038682213 21.145659818619286 35.23505459929669 20-21 26.374236535258188 23.540162872478255 17.959929668702575 32.12567092356098 22-23 29.38182491208588 22.931704608550803 15.970294280955025 31.71617619840829 24-25 18.612344993522118 32.82204330927262 15.22071071626874 33.344900980936515 26-27 23.810845826392747 33.4513233388858 17.77484730705164 24.962983527669813 28-29 20.135579103234463 30.445143676831243 21.62324742029522 27.796029799639072 30-31 22.311678697020174 28.34305015732001 22.024801036461223 27.32047010919859 32-33 16.738386081806404 32.01693503609106 22.263094577086804 28.981584305015733 34-35 15.130833121254888 37.56796150197811 19.90838211137589 27.392823265391108 36-37 23.435367066935054 26.50100645519539 20.95971865528331 29.103907822586244 38-39 25.23887744950605 22.726326261481155 25.02371422622215 27.011082062790642 40-41 18.8321302979826 29.747362576346475 21.754118082546732 29.66638904312419 42-43 12.835461780492318 29.0741254858412 24.523412918748843 33.56699981491764 44-45 13.157651196150107 24.124288556753505 29.75567997778909 32.962380269307296 46-47 16.92809550249861 28.31991486211364 24.983805293355545 29.768184342032207 48-49 18.42263557282991 29.807514343883028 21.557468073292615 30.21238200999445 50-51 26.098926522302424 29.182861373311127 16.45382195076809 28.26439015361836 52-53 11.892367136345758 33.685014229194145 21.096226371439812 33.326392263020296 54-55 15.536069594188145 26.902966082087826 21.465920133265467 36.095044190458566 56-57 18.916292628753876 29.92226181111471 18.374901670445606 32.78654388968581 58-59 17.23276260990282 29.990745025451183 19.37528921795465 33.401203146691344 60-61 13.489437515907355 26.585529512482935 21.25222702977857 38.67280594183114 62-63 17.454881999074505 28.172142526608052 19.664507172605276 34.70846830171217 64-65 17.691702531352675 26.884631403581842 18.968948123467076 36.45471794159841 66-67 13.878797695351366 35.96732767198093 15.204664830969294 34.94920980169841 68-69 15.801406625948546 39.34851008698871 13.568850638534148 31.281232648528594 70-71 16.324264297612437 36.54913936701833 13.446233573940402 33.68036276142883 72-73 18.68261533478321 35.90995326454121 14.585164962287726 30.822266438387857 74-75 15.131883387320686 34.31050439611291 16.647385469689958 33.91022674687645 76 13.284286507495835 33.87932630020359 17.69850083287063 35.13788635942995 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.5 16 3.0 17 5.0 18 3.0 19 1.0 20 5.5 21 10.0 22 14.5 23 24.0 24 32.5 25 36.0 26 34.0 27 44.0 28 75.0 29 94.0 30 85.0 31 112.0 32 162.0 33 176.0 34 200.5 35 275.5 36 345.5 37 365.0 38 427.5 39 546.5 40 708.5 41 864.0 42 914.0 43 969.0 44 1119.5 45 1248.0 46 1281.0 47 1341.0 48 1376.5 49 1339.5 50 1327.0 51 1330.5 52 1233.5 53 1124.0 54 1115.0 55 1060.0 56 923.5 57 789.5 58 737.0 59 715.0 60 611.5 61 481.0 62 432.0 63 391.5 64 297.5 65 248.5 66 222.5 67 192.0 68 162.0 69 119.0 70 97.5 71 89.0 72 80.0 73 61.0 74 47.5 75 44.0 76 44.5 77 39.0 78 37.0 79 41.0 80 35.0 81 21.5 82 15.0 83 16.0 84 15.5 85 13.0 86 10.0 87 9.0 88 7.5 89 4.5 90 1.5 91 1.5 92 3.0 93 3.0 94 3.0 95 2.5 96 2.0 97 1.5 98 1.5 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.009254118082546734 9 0.0 10-11 0.0023135295206366834 12-13 0.0 14-15 0.0023135295206366834 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.004627059041273367 30-31 0.0 32-33 0.0 34-35 0.0023135295206366834 36-37 0.006940588561910051 38-39 0.0023135295206366834 40-41 0.0 42-43 0.0 44-45 0.004627059041273367 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.006940588561910051 54-55 0.004627059041273367 56-57 0.004627059041273367 58-59 0.009254118082546734 60-61 0.011567647603183417 62-63 0.009254118082546734 64-65 0.013881177123820101 66-67 0.016194706644456783 68-69 0.0 70-71 0.0 72-73 0.004627059041273367 74-75 0.009254118082546734 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 21612.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.30760688506386 #Duplication Level Percentage of deduplicated Percentage of total 1 97.41520130681273 93.81824912085878 2 1.748822907658307 3.3684989820470106 3 0.5957528586528298 1.7212659633536922 4 0.13932929758816182 0.5367388487877105 5 0.05284904391275103 0.25448824727003516 6 0.04324012683770539 0.2498611882287618 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0048044585375228216 0.05089764945400703 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004627059041273367 0.0 2 0.0 0.0 0.0 0.004627059041273367 0.0 3 0.0 0.0 0.0 0.004627059041273367 0.0 4 0.0 0.0 0.0 0.009254118082546734 0.0 5 0.0 0.0 0.0 0.0138811771238201 0.0 6 0.0 0.0 0.0 0.0138811771238201 0.0 7 0.0 0.0 0.0 0.0138811771238201 0.0 8 0.0 0.0 0.0 0.0138811771238201 0.0 9 0.0 0.0 0.0 0.0138811771238201 0.0 10 0.0 0.0 0.0 0.0138811771238201 0.0 11 0.0 0.0 0.0 0.0138811771238201 0.0 12 0.0 0.0 0.0 0.0138811771238201 0.0 13 0.0 0.0 0.0 0.0138811771238201 0.0 14 0.0 0.0 0.0 0.018508236165093468 0.0 15 0.0 0.0 0.0 0.018508236165093468 0.0 16 0.0 0.0 0.0 0.018508236165093468 0.0 17 0.0 0.0 0.0 0.018508236165093468 0.0 18 0.0 0.0 0.0 0.037016472330186935 0.0 19 0.0 0.0 0.0 0.050897649454007036 0.0 20 0.0 0.0 0.0 0.050897649454007036 0.0 21 0.0 0.0 0.0 0.050897649454007036 0.0 22 0.0 0.0 0.0 0.17582824356838794 0.0 23 0.0 0.0 0.0 0.17582824356838794 0.0 24 0.0 0.0 0.0 0.1804553026096613 0.0 25 0.0 0.0 0.0 0.19896353877475476 0.0 26 0.0 0.0 0.0 0.19896353877475476 0.0 27 0.0 0.0 0.0 0.19896353877475476 0.0 28 0.0 0.0 0.0 0.21747177493984823 0.0 29 0.0 0.0 0.0 0.24523412918748844 0.0 30 0.0 0.0 0.0 0.277623542476402 0.0 31 0.0 0.0 0.0 0.2822506015176754 0.0 32 0.0 0.0 0.0 0.31001295576531557 0.0 33 0.0 0.0 0.0 0.328521191930409 0.0 34 0.0 0.0 0.0 0.3840459004256894 0.0 35 0.0 0.0 0.0 0.43494354987969647 0.0 36 0.0 0.0 0.0 0.4904682583749769 0.0 37 0.0 0.0 0.0 0.5968906163242643 0.0 38 0.0 0.0 0.0 0.694058856191005 0.0 39 0.0 0.0 0.0 0.8421247455117528 0.0 40 0.0 0.0 0.0 0.9901906348325005 0.0 41 0.0 0.0 0.0 1.198408291689802 0.0 42 0.0 0.0 0.0 1.314084767721636 0.0 43 0.0 0.0 0.0 1.5223024245789376 0.0 44 0.0 0.0 0.0 1.7258930223949658 0.0 45 0.0 0.0 0.0 1.9479918563760874 0.0 46 0.0 0.0 0.0 2.109938922820655 0.0 47 0.0 0.0 0.0 2.332037756801777 0.0 48 0.0 0.0 0.0 2.4523412918748844 0.0 49 0.0 0.0 0.0 2.5957801221543586 0.0 50 0.0 0.0 0.0 2.7484730705163796 0.0 51 0.0 0.0 0.0 2.9335554321673145 0.0 52 0.0 0.0 0.0 3.104756616694429 0.0 53 0.0 0.0 0.0 3.234314269850083 0.0 54 0.0 0.0 0.0 3.4147695724597447 0.0 55 0.0 0.0 0.0 3.5628354617804923 0.0 56 0.0 0.0 0.0 3.71090135110124 0.0 57 0.0 0.0 0.0 3.858967240421988 0.0 58 0.0 0.0 0.0 3.997779011660189 0.0 59 0.0 0.0 0.0 4.15047196002221 0.0 60 0.0 0.0 0.0 4.358689616879511 0.0 61 0.0 0.0 0.0 4.492874329076439 0.0 62 0.0 0.0 0.0 4.613177864149547 0.0 63 0.0 0.0 0.0 4.756616694429021 0.0 64 0.0 0.0 0.0 4.886174347584675 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTGTAG 25 2.713652E-6 70.14617 35 AATGTAC 15 0.0021772294 70.14617 35 TGTACAT 15 0.0021772294 70.14617 37 TAGTGTA 20 7.673997E-5 70.146164 34 GTGTACA 20 7.673997E-5 70.146164 36 TAGGTGT 20 7.673997E-5 70.146164 33 CATCTGC 20 7.7630015E-5 69.983795 9 TGCTGCC 15 0.0021974032 69.983795 16 TTATACC 25 2.7514834E-6 69.983795 2 TAGTAAA 15 0.0021974032 69.983795 23 GATCTCT 25 2.7514834E-6 69.983795 41 GCGCCAA 15 0.0021974032 69.983795 18 ATATGGC 15 0.0021974032 69.983795 10 TTTATAC 15 0.0021974032 69.983795 1 AGCGACC 15 0.0021974032 69.983795 27 TATGGCG 15 0.0021974032 69.983795 11 GAAGGCT 20 7.7630015E-5 69.983795 26 ACATCTT 40 1.00462785E-8 61.23582 8 GGTGTAG 35 2.7996066E-7 60.12529 35 TTCCGAC 35 2.845136E-7 59.986115 19 >>END_MODULE