SRR1779783_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779783_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	128933
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT	10341	8.020444727106327	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG	1464	1.135473462961383	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	673	0.5219765304460456	No Hit
ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT	428	0.33195535665810927	RNA PCR Primer, Index 30 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC	316	0.24508853435505265	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT	247	0.1915723670433481	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT	244	0.1892455771602305	No Hit
CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT	145	0.1124615110173501	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGACC	15	0.002218265	70.017075	55
ATCGTAT	35	3.6834535E-9	69.98992	39
CTTCGTC	15	0.0022216826	69.989914	21
ATAGAGC	15	0.0022216826	69.989914	8
GGATATC	20	7.907626E-5	69.989914	35
CGGATAT	20	7.907626E-5	69.989914	34
ATGACGG	15	0.0022216826	69.989914	44
CGTACAG	15	0.0022216826	69.989914	33
GACGACG	15	0.0022216826	69.989914	4
CTGGATC	15	0.0022216826	69.989914	45
CGTCTTA	30	8.326071E-6	58.347565	48
TATCGTA	25	2.3847507E-4	55.991932	38
AGTACCG	25	2.3847507E-4	55.991932	5
CTTTATA	45	2.6815542E-8	54.4366	2
CGGAAAA	20	0.006931419	52.512802	53
GGTAACG	20	0.006931419	52.512802	52
GGGATAT	20	0.006931419	52.512802	51
GGTCGGA	20	0.0069420678	52.49243	25
GCTGGAC	20	0.0069420678	52.49243	3
TCTTCGT	20	0.0069420678	52.49243	20