##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779783_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 128933 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.38412974180388 34.0 34.0 34.0 34.0 34.0 2 33.55011517609921 34.0 34.0 34.0 34.0 34.0 3 33.68909433581783 34.0 34.0 34.0 34.0 34.0 4 33.425088999713026 34.0 34.0 34.0 34.0 34.0 5 33.50340874717877 34.0 34.0 34.0 34.0 34.0 6 37.092645017179464 38.0 37.0 38.0 36.0 38.0 7 37.194899676576206 38.0 38.0 38.0 36.0 38.0 8 37.035910123862784 38.0 37.0 38.0 36.0 38.0 9 36.93573406342829 38.0 37.0 38.0 35.0 38.0 10-11 36.87300380817945 38.0 37.0 38.0 35.0 38.0 12-13 37.076245026486625 38.0 37.5 38.0 35.5 38.0 14-15 37.09770578517525 38.0 38.0 38.0 36.0 38.0 16-17 36.99732806961755 38.0 37.5 38.0 35.0 38.0 18-19 36.86298697773262 38.0 37.0 38.0 34.5 38.0 20-21 36.892510063366245 38.0 37.0 38.0 34.5 38.0 22-23 36.824346753740315 38.0 37.0 38.0 34.5 38.0 24-25 37.06724810560523 38.0 37.5 38.0 36.0 38.0 26-27 36.92826894588663 38.0 38.0 38.0 35.0 38.0 28-29 36.318382415673256 38.0 37.0 38.0 34.0 38.0 30-31 36.783883877672906 38.0 37.0 38.0 34.5 38.0 32-33 36.76202368672101 38.0 37.0 38.0 34.5 38.0 34-35 36.877064056525484 38.0 37.5 38.0 35.5 38.0 36-37 36.79050747287351 38.0 37.0 38.0 34.5 38.0 38-39 35.9835534735095 38.0 37.0 38.0 31.5 38.0 40-41 36.489366570234154 38.0 37.0 38.0 34.0 38.0 42-43 36.914827856328486 38.0 37.0 38.0 35.5 38.0 44-45 36.621648453072524 38.0 37.0 38.0 34.0 38.0 46-47 36.81357371658148 38.0 37.0 38.0 35.0 38.0 48-49 36.38004234757587 38.0 37.0 38.0 34.0 38.0 50-51 36.57038539396431 38.0 37.0 38.0 34.0 38.0 52-53 36.488691801168045 38.0 37.0 38.0 34.0 38.0 54-55 36.501144005025864 38.0 37.0 38.0 34.0 38.0 56-57 36.34113066476387 38.0 37.0 38.0 34.0 38.0 58-59 36.493698277399886 38.0 37.0 38.0 34.0 38.0 60-61 36.06426205858857 38.0 37.0 38.0 33.5 38.0 62-63 35.857976623517644 38.0 37.0 38.0 32.0 38.0 64-65 36.29421870273708 38.0 37.0 38.0 34.0 38.0 66-67 36.08469515174548 38.0 37.0 38.0 32.5 38.0 68-69 36.17435412190828 38.0 37.0 38.0 34.0 38.0 70-71 35.51441446332591 38.0 36.5 38.0 30.0 38.0 72-73 34.28949144129122 38.0 36.0 38.0 22.5 38.0 74-75 34.13124646134038 38.0 36.0 38.0 21.5 38.0 76 33.7815687217392 38.0 34.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 4.0 22 4.0 23 11.0 24 39.0 25 80.0 26 165.0 27 290.0 28 561.0 29 901.0 30 1483.0 31 2401.0 32 3627.0 33 5786.0 34 9334.0 35 16069.0 36 22108.0 37 66069.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.45999130920603 18.99171270718232 12.027438078092992 33.52085790551865 2 17.271761302381858 18.174555777031483 41.36411934880907 23.18956357177759 3 16.98091256699216 21.288576237270522 37.355835976825176 24.37467521891215 4 12.654634577648856 25.07348778047513 35.39202531547393 26.879852326402087 5 11.99227505758805 33.219579161269806 42.05052236432876 12.737623416813385 6 25.710252611821645 43.75450815539854 17.58975591974126 12.945483313038556 7 23.975242955643626 28.41088006949346 21.394832975266223 26.219043999596693 8 21.280820270993463 42.17616901801711 17.84802959676731 18.694981114222113 9 21.486353377335515 15.747713928939838 19.382159726369512 43.38377296735514 10-11 22.569474067926755 28.468662018257547 28.402736304902547 20.559127608913155 12-13 22.244499080917997 20.95351849410159 29.16786237813438 27.63412004684604 14-15 20.364452855358987 21.756648802091007 21.968774479768562 35.91012386278145 16-17 25.99955015395593 29.013906447534765 22.0796847975305 22.9068586009788 18-19 26.01894006964858 24.91216368191231 23.551379398602375 25.517516849836735 20-21 20.434644350166366 24.107094382353626 22.982479272180125 32.47578199529988 22-23 20.853854327441386 29.120550983844325 23.396260073061203 26.62933461565309 24-25 25.950501039307543 29.094018552415225 23.217277324481124 21.738203083796108 26-27 25.656736444509935 30.011323710764504 24.011695997145804 20.32024384757975 28-29 20.478465559631747 29.561477666695108 24.570901165721732 25.38915560795142 30-31 20.134876253558048 24.5802083252542 34.39150566573336 20.893409755454385 32-33 25.605547067081353 23.99657186290554 25.246058030139686 25.15182303987342 34-35 25.992181985992723 23.430774122994112 23.961670014658775 26.615373876354386 36-37 27.100509566984403 28.121970325673022 23.683618623626224 21.093901483716348 38-39 20.542840079731334 25.495412345947123 28.670317141461073 25.29143043286048 40-41 19.807574476666176 22.898327038074036 30.581775030442166 26.712323454817614 42-43 25.48232602330677 22.851879859616467 29.91487794000737 21.750916177069396 44-45 19.919648189369674 28.171608509846198 30.93971287412842 20.969030426655706 46-47 24.885405598256458 22.957272381779685 26.38773626612271 25.76958575384114 48-49 24.40686247896194 22.350368020599845 25.489595371239325 27.75317412919889 50-51 20.167089432407902 22.600901383103334 30.800229612219095 26.43177957226967 52-53 18.621304988750097 22.575451935759176 36.436108309411125 22.3671347660796 54-55 17.96740113060111 22.973628360473192 31.93307958826565 27.125890920660044 56-57 23.711360206104768 22.86009164522975 26.250033949862843 27.178514198802638 58-59 18.382198912259195 23.14785361274255 35.10757151391486 23.362375961083394 60-61 23.36169073748647 28.213095612166917 26.342515546141883 22.08269810420473 62-63 17.925871331872223 35.267169650303536 24.058263348784887 22.748695669039353 64-65 17.915223537898857 35.96852201635956 23.25050129736145 22.86575314838014 66-67 17.776010551633174 36.129257506400805 22.845837535883312 23.248894406082705 68-69 17.805977211203587 36.5039597278996 22.522358306896365 23.16770475400045 70-71 18.260373802053234 34.85419082598696 22.8291517509124 24.056283621047406 72-73 18.845998696744964 32.25323486517516 22.777872591305425 26.122893846774442 74-75 19.281486825060696 31.08812510180811 23.125373296410924 26.505014776720266 76 19.56918017018702 30.730625130898176 23.487980638705526 26.212214060209284 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 3.5 15 6.0 16 8.0 17 11.0 18 19.5 19 39.5 20 63.5 21 76.0 22 98.5 23 155.0 24 230.0 25 271.0 26 348.5 27 465.0 28 647.5 29 791.0 30 917.5 31 1170.0 32 1606.0 33 1916.0 34 2120.0 35 2645.5 36 3389.5 37 3812.0 38 3961.0 39 4882.5 40 6092.0 41 7980.0 42 9431.0 43 10501.0 44 11789.5 45 11014.0 46 10020.0 47 9387.0 48 8000.5 49 6862.0 50 6477.0 51 5890.0 52 4846.0 53 4113.0 54 3837.0 55 3534.0 56 2958.0 57 2275.5 58 1866.0 59 1722.0 60 1418.5 61 1149.0 62 1039.0 63 899.5 64 761.5 65 690.5 66 592.5 67 567.0 68 530.5 69 516.5 70 477.5 71 416.0 72 386.5 73 330.0 74 272.0 75 241.0 76 238.5 77 227.0 78 185.0 79 152.0 80 129.5 81 103.5 82 100.5 83 101.0 84 70.5 85 32.0 86 25.5 87 27.0 88 22.5 89 15.0 90 8.0 91 4.0 92 4.0 93 3.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04731139429005762 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.755966277058628E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.877983138529314E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.015511932554117255 52-53 0.0333506549913521 54-55 0.04925038585932228 56-57 0.051577175742439876 58-59 0.032575058363646235 60-61 0.03296285667749917 62-63 0.027533680283558126 64-65 0.013572940984852597 66-67 0.0333506549913521 68-69 0.007755966277058627 70-71 0.011246151101735009 72-73 0.019389915692646566 74-75 0.010858352787882079 76 0.012409546043293805 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 128933.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.07040090589686 #Duplication Level Percentage of deduplicated Percentage of total 1 47.01947079380929 14.609138079467632 2 18.050424363454816 11.216678429882187 3 11.979530703944084 11.166264649081306 4 7.641038442336495 9.496405109630583 5 4.760359460808787 7.3953138451754015 6 2.698452321517723 5.030519727300225 7 1.7873190214677985 3.887290298061784 8 1.1208187718422367 2.785943086719459 9 0.8212680978532202 2.2965416146370594 >10 4.051422865701448 20.272544654975842 >50 0.042436345481777334 0.8244592152513321 >100 0.019970044932601096 1.3410065693034368 >500 0.002496255616575137 0.5219765304460456 >1k 0.002496255616575137 1.135473462961383 >5k 0.0 0.0 >10k+ 0.002496255616575137 8.020444727106327 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 10341 8.020444727106327 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 1464 1.135473462961383 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 673 0.5219765304460456 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 428 0.33195535665810927 RNA PCR Primer, Index 30 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 316 0.24508853435505265 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 247 0.1915723670433481 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 244 0.1892455771602305 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT 145 0.1124615110173501 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.755966277058627E-4 0.0 2 0.0 0.0 0.0 7.755966277058627E-4 0.0 3 0.0 0.0 0.0 7.755966277058627E-4 0.0 4 0.0 0.0 0.0 0.0015511932554117254 0.0 5 0.0 0.0 0.0 0.0031023865108234508 0.0 6 0.0 0.0 0.0 0.0031023865108234508 0.0 7 0.0 0.0 0.0 0.0031023865108234508 0.0 8 0.0 0.0 0.0 0.0031023865108234508 0.0 9 0.0 0.0 0.0 0.0062047730216469015 0.0 10 0.0 0.0 0.0 0.007755966277058627 0.0 11 0.0 0.0 0.0 0.007755966277058627 0.0 12 0.0 0.0 0.0 0.010082756160176216 0.0 13 0.0 0.0 0.0 0.010082756160176216 0.0 14 0.0 0.0 0.0 0.010858352787882079 0.0 15 0.0 0.0 0.0 0.012409546043293803 0.0 16 0.0 0.0 0.0 0.013185142670999666 0.0 17 0.0 0.0 0.0 0.013960739298705529 0.0 18 0.0 0.0 0.0 0.017838722437234843 0.0 19 0.0 0.0 0.0 0.020165512320352432 0.0 20 0.0 0.0 0.0 0.020165512320352432 0.0 21 0.0 0.0 0.0 0.021716705575764158 0.0 22 0.0 0.0 0.0 0.024043495458881743 0.0 23 0.0 0.0 0.0 0.02869707522511692 0.0 24 0.0 0.0 0.0 0.030248268480528646 0.0 25 0.0 0.0 0.0 0.0333506549913521 0.0 26 0.0 0.0 0.0 0.034901848246763824 0.0 27 0.0 0.0 0.0 0.0519649740562928 0.0 28 0.0 0.0 0.0 0.06437452009958661 0.0 29 0.0 0.0 0.0 0.0853156290476449 0.0 30 0.0 0.0 0.0 0.10703233462340905 0.0 31 0.0 0.0 0.0 0.12874904019917321 0.0 32 0.0 0.0 0.0 0.16365088844593703 0.0 33 0.0 0.0 0.0 0.20320631645893603 0.0 34 0.0 0.0 0.0 0.2512933073766995 0.0 35 0.0 0.0 0.0 0.3459160959568148 0.0 36 0.0 0.0 0.0 0.5018110181256932 0.0 37 0.0 0.0 0.0 0.8058448961863914 0.0 38 0.0 0.0 0.0 1.1145323540133247 0.0 39 0.0 0.0 0.0 1.5116378273987265 0.0 40 0.0 0.0 0.0 1.972342224256009 0.0 41 0.0 0.0 0.0 2.509055090628466 0.0 42 0.0 0.0 0.0 3.152800291624332 0.0 43 0.0 0.0 0.0 3.781809156693787 0.0 44 0.0 0.0 0.0 4.448822256520828 0.0 45 0.0 0.0 0.0 5.126693709135752 0.0 46 0.0 0.0 0.0 5.8464473796467935 0.0 47 0.0 0.0 0.0 6.579386192828833 0.0 48 0.0 0.0 0.0 7.214599830919935 0.0 49 0.0 0.0 0.0 7.802502074720979 0.0 50 0.0 0.0 0.0 8.44702287234455 0.0 51 0.0 0.0 0.0 9.117138358682416 0.0 52 0.0 0.0 0.0 9.774844298976989 0.0 53 0.0 0.0 0.0 10.34801020685162 0.0 54 0.0 0.0 0.0 11.011920920167839 0.0 55 0.0 0.0 0.0 11.664973280696175 0.0 56 0.0 0.0 0.0 12.22650523915522 0.0 57 0.0 0.0 0.0 12.813631886328558 0.0 58 0.0 0.0 0.0 13.340261996540839 0.0 59 0.0 0.0 0.0 13.879301652796414 0.0 60 0.0 0.0 0.0 14.457121140437282 0.0 61 0.0 0.0 0.0 14.962034545073799 0.0 62 0.0 0.0 0.0 15.497971814818548 0.0 63 0.0 0.0 0.0 16.016070362126065 0.0 64 0.0 0.0 0.0 16.485306321888114 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGACC 15 0.002218265 70.017075 55 ATCGTAT 35 3.6834535E-9 69.98992 39 CTTCGTC 15 0.0022216826 69.989914 21 ATAGAGC 15 0.0022216826 69.989914 8 GGATATC 20 7.907626E-5 69.989914 35 CGGATAT 20 7.907626E-5 69.989914 34 ATGACGG 15 0.0022216826 69.989914 44 CGTACAG 15 0.0022216826 69.989914 33 GACGACG 15 0.0022216826 69.989914 4 CTGGATC 15 0.0022216826 69.989914 45 CGTCTTA 30 8.326071E-6 58.347565 48 TATCGTA 25 2.3847507E-4 55.991932 38 AGTACCG 25 2.3847507E-4 55.991932 5 CTTTATA 45 2.6815542E-8 54.4366 2 CGGAAAA 20 0.006931419 52.512802 53 GGTAACG 20 0.006931419 52.512802 52 GGGATAT 20 0.006931419 52.512802 51 GGTCGGA 20 0.0069420678 52.49243 25 GCTGGAC 20 0.0069420678 52.49243 3 TCTTCGT 20 0.0069420678 52.49243 20 >>END_MODULE