##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779782_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 133005 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.4452013082215 34.0 34.0 34.0 34.0 34.0 2 33.58047441825495 34.0 34.0 34.0 34.0 34.0 3 33.72200293222059 34.0 34.0 34.0 34.0 34.0 4 33.4659674448329 34.0 34.0 34.0 34.0 34.0 5 33.520326303522424 34.0 34.0 34.0 34.0 34.0 6 37.15434006240367 38.0 38.0 38.0 36.0 38.0 7 37.251900304499834 38.0 38.0 38.0 36.0 38.0 8 37.1285891507838 38.0 38.0 38.0 36.0 38.0 9 37.0196082854028 38.0 38.0 38.0 36.0 38.0 10-11 36.961362354798695 38.0 37.0 38.0 35.0 38.0 12-13 37.15073869403406 38.0 37.5 38.0 36.0 38.0 14-15 37.17589564302094 38.0 38.0 38.0 36.0 38.0 16-17 37.07436186609526 38.0 38.0 38.0 36.0 38.0 18-19 36.92656291116876 38.0 37.5 38.0 35.0 38.0 20-21 36.954802451035675 38.0 37.0 38.0 35.5 38.0 22-23 36.92030750723657 38.0 37.0 38.0 35.0 38.0 24-25 37.14556219690989 38.0 38.0 38.0 36.0 38.0 26-27 37.02293898725612 38.0 38.0 38.0 36.0 38.0 28-29 36.42711552197286 38.0 37.0 38.0 34.0 38.0 30-31 36.812326604263 38.0 37.0 38.0 35.0 38.0 32-33 36.927262133002515 38.0 37.0 38.0 35.5 38.0 34-35 36.88009097402353 38.0 37.0 38.0 35.5 38.0 36-37 36.84540054885154 38.0 37.0 38.0 35.0 38.0 38-39 36.37899703018684 38.0 37.0 38.0 34.0 38.0 40-41 36.6837487312507 38.0 37.0 38.0 34.5 38.0 42-43 37.02853652118341 38.0 37.5 38.0 36.0 38.0 44-45 36.74301717980527 38.0 37.0 38.0 34.5 38.0 46-47 36.895943761512726 38.0 37.0 38.0 35.5 38.0 48-49 36.48382015713695 38.0 37.0 38.0 34.0 38.0 50-51 36.668425999022595 38.0 37.0 38.0 34.0 38.0 52-53 36.597018909063564 38.0 37.0 38.0 34.0 38.0 54-55 36.59315439269201 38.0 37.0 38.0 34.0 38.0 56-57 36.442772828089176 38.0 37.0 38.0 34.0 38.0 58-59 36.55953911507086 38.0 37.0 38.0 34.0 38.0 60-61 36.15988496673057 38.0 37.0 38.0 34.0 38.0 62-63 35.94438930867261 38.0 37.0 38.0 32.5 38.0 64-65 36.412326604263 38.0 37.0 38.0 34.0 38.0 66-67 36.16441487162137 38.0 37.0 38.0 32.5 38.0 68-69 36.233795721965336 38.0 37.0 38.0 34.0 38.0 70-71 35.3936957257246 38.0 36.5 38.0 28.5 38.0 72-73 33.84732904778016 38.0 35.0 38.0 21.5 38.0 74-75 33.58639524829894 38.0 35.0 38.0 19.0 38.0 76 33.31768730498853 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 3.0 22 0.0 23 16.0 24 30.0 25 51.0 26 161.0 27 286.0 28 469.0 29 806.0 30 1427.0 31 2243.0 32 3575.0 33 5652.0 34 9304.0 35 17082.0 36 23559.0 37 68339.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.15261950430629 16.155553048253037 11.016585806160442 34.67524164128023 2 19.625577985790006 18.490282320213524 39.588737265516336 22.29540242848013 3 18.147438066238113 20.269914664862224 38.18878989511673 23.39385737378294 4 12.547648584639676 27.37491071764219 34.497951204841925 25.579489492876206 5 11.972482237509869 31.693545355437763 42.977331679260175 13.356640727792188 6 23.793842336754256 45.04116386602007 18.450434194203226 12.714559603022444 7 23.841208977106124 27.65760685688508 20.73906995977595 27.762114206232845 8 21.508965828352316 41.79767677906845 17.744445697530168 18.94891169504906 9 21.06236607646329 17.83241231532649 18.031652945377992 43.07356866283222 10-11 21.627758354949062 29.179730085335137 28.468102702905906 20.724408856809895 12-13 21.378519604526144 20.653734821999173 29.799255667080182 28.168489906394495 14-15 20.416525694522765 20.336453516785085 21.666854629525208 37.58016615916695 16-17 27.353482951768733 28.5808804180294 21.130408631254465 22.935227998947408 18-19 27.3696477576031 24.27465132889741 22.09428216984324 26.261418743656257 20-21 20.011653697229427 22.887109507161384 22.09691364986279 35.004323145746405 22-23 20.275929476335477 29.49813916770046 22.6754633284463 27.55046802751776 24-25 26.590829633583823 29.620802303681455 22.31954557928491 21.46882248344981 26-27 26.95575354309988 30.96763279575956 22.42434494943799 19.65226871170257 28-29 19.994737039960903 30.476297883538212 23.411149956768543 26.11781511973234 30-31 26.547498214352842 24.60772151422879 28.888011728882372 19.956768542535993 32-33 25.76707642569828 30.244351716100898 24.579151159730834 19.40942069846998 34-35 21.37964738167738 29.92293522799895 29.705650163527686 18.991767226795986 36-37 19.58948911695049 28.966204278034663 31.46573437088831 19.97857223412654 38-39 19.273335588887637 24.082929213187473 30.943949475583626 25.699785722341268 40-41 19.480094733280705 21.889026728318484 31.169880831547687 27.460997706853124 42-43 26.01350335328261 21.7173919581366 30.56562208655379 21.70348260202701 44-45 19.136874553588214 28.551934137814367 31.565730611631142 20.74546069696628 46-47 25.414082177361752 22.273598736889593 25.759933837073795 26.552385248674863 48-49 24.754708469606406 21.313860381188675 24.916732453667155 29.01469869553776 50-51 19.71756850242127 21.23575059403856 31.551342978313833 27.495337925226337 52-53 17.769956229412028 21.319359836349143 38.523005881202714 22.387678053036115 54-55 16.964739069111427 21.748942172073342 33.22689233662435 28.05942642219088 56-57 23.733179893344165 21.72116042752593 26.748576543237736 27.79708313589217 58-59 17.636174917640687 22.129834378807708 37.05567339079682 23.178317312754785 60-61 23.934101968216723 28.60043771575551 25.826357708535458 21.639102607492312 62-63 17.01769229322955 37.288435143926144 23.495591027882753 22.198281534961552 64-65 16.645361165837006 38.366068608725726 22.462514851187343 22.52605537424992 66-67 16.6898564240642 38.23151149585217 22.35016282970194 22.728469250381693 68-69 16.72882439189443 38.38302191811722 22.0910560547389 22.797097635249443 70-71 17.430126850689145 37.15740162868164 21.739441014805514 23.673030505823704 72-73 17.797037148443376 34.32621446834111 21.850278237328922 26.0264701458866 74-75 18.419974208878013 32.94721843125312 22.39879992330337 26.23400743656549 76 18.706107042422968 33.39699535317383 22.182203708437974 25.71469389596523 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 2.0 15 2.5 16 1.5 17 2.0 18 13.0 19 29.5 20 35.5 21 36.0 22 53.0 23 76.0 24 138.0 25 194.0 26 270.0 27 358.5 28 451.0 29 531.0 30 672.0 31 943.0 32 1284.5 33 1496.0 34 1754.0 35 2378.5 36 3144.5 37 3544.0 38 6113.0 39 10499.0 40 12065.0 41 10728.0 42 9642.0 43 8984.5 44 8408.0 45 8203.5 46 7918.0 47 7808.0 48 7468.5 49 6994.5 50 6750.0 51 6208.5 52 5025.0 53 4100.5 54 3818.0 55 3501.0 56 2868.5 57 2197.0 58 1841.0 59 1592.0 60 1238.5 61 1051.0 62 968.0 63 909.5 64 740.5 65 603.5 66 570.5 67 564.0 68 497.5 69 418.5 70 394.5 71 383.0 72 361.0 73 308.5 74 264.0 75 250.0 76 232.5 77 219.5 78 186.0 79 148.0 80 142.5 81 114.5 82 97.0 83 102.0 84 85.0 85 61.5 86 40.5 87 26.0 88 34.5 89 30.5 90 12.5 91 8.0 92 9.0 93 6.5 94 2.0 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04511108604939664 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.759257170783053E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 7.518514341566106E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.012781474380662381 52-53 0.029322205932107815 54-55 0.050749971805571226 56-57 0.040599977444456974 58-59 0.03834442314198714 60-61 0.03157776023457765 62-63 0.0281944287808729 64-65 0.014285177248975602 66-67 0.03308146310289087 68-69 0.007518514341566107 70-71 0.010525920078192549 72-73 0.018796285853915264 74-75 0.010149994361114243 76 0.008270365775722717 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 133005.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.524529153039364 #Duplication Level Percentage of deduplicated Percentage of total 1 44.524570460815646 12.255178376752754 2 16.594280095058593 9.13499492500282 3 12.1991859925155 10.073305514830269 4 8.118222295064054 8.938009849253788 5 5.424895517495698 7.4658847411751434 6 3.466360730967795 5.724596819668434 7 2.103307929744052 4.052479230104131 8 1.5050943756999644 3.31416112176234 9 1.1336010270698462 2.8081651065749407 >10 4.840339807151247 20.727040336829443 >50 0.06282608101832883 1.0961993910003383 >100 0.016389412439564044 1.0766512537122666 >500 0.00273156873992734 0.4736664035186647 >1k 0.00546313747985468 2.290139468441036 >5k 0.0 0.0 >10k+ 0.00273156873992734 10.569527461373633 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT 14058 10.569527461373633 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 2024 1.52174730273298 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 1022 0.7683921657080561 No Hit ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT 630 0.4736664035186647 Illumina PCR Primer Index 10 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 496 0.3729183113416789 No Hit CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 230 0.17292582985602045 Illumina PCR Primer Index 10 (95% over 21bp) CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 197 0.1481147325288523 Illumina PCR Primer Index 10 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT 187 0.1405962181872862 No Hit CTTATACACATCTCCGAGCCCACGAGACAGTAGATTAACTCGTATGCCGT 176 0.13232585241156347 No Hit CTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 146 0.10977030938686516 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.518514341566106E-4 0.0 2 0.0 0.0 0.0 7.518514341566106E-4 0.0 3 0.0 0.0 0.0 7.518514341566106E-4 0.0 4 0.0 0.0 0.0 0.0052629600390962745 0.0 5 0.0 0.0 0.0 0.0052629600390962745 0.0 6 0.0 0.0 0.0 0.0052629600390962745 0.0 7 0.0 0.0 0.0 0.007518514341566107 0.0 8 0.0 0.0 0.0 0.01127777151234916 0.0 9 0.0 0.0 0.0 0.015788880117288823 0.0 10 0.0 0.0 0.0 0.015788880117288823 0.0 11 0.0 0.0 0.0 0.015788880117288823 0.0 12 0.0 0.0 0.0 0.015788880117288823 0.0 13 0.0 0.0 0.0 0.015788880117288823 0.0 14 0.0 0.0 0.0 0.015788880117288823 0.0 15 0.0 0.0 0.0 0.018796285853915268 0.0 16 0.0 0.0 0.0 0.018796285853915268 0.0 17 0.0 0.0 0.0 0.018796285853915268 0.0 18 0.0 0.0 0.0 0.020299988722228487 0.0 19 0.0 0.0 0.0 0.027818503063794593 0.0 20 0.0 0.0 0.0 0.03383331453704748 0.0 21 0.0 0.0 0.0 0.03458516597120409 0.0 22 0.0 0.0 0.0 0.03984812601030036 0.0 23 0.0 0.0 0.0 0.04285553174692681 0.0 24 0.0 0.0 0.0 0.05037404608849291 0.0 25 0.0 0.0 0.0 0.056388857561745796 0.0 26 0.0 0.0 0.0 0.060899966166685464 0.0 27 0.0 0.0 0.0 0.07593699484981768 0.0 28 0.0 0.0 0.0 0.084959212059697 0.0 29 0.0 0.0 0.0 0.10676290365023872 0.0 30 0.0 0.0 0.0 0.15187398969963536 0.0 31 0.0 0.0 0.0 0.19924063005150183 0.0 32 0.0 0.0 0.0 0.2383369046276456 0.0 33 0.0 0.0 0.0 0.3052516822675839 0.0 34 0.0 0.0 0.0 0.3721664599075223 0.0 35 0.0 0.0 0.0 0.4744182549528213 0.0 36 0.0 0.0 0.0 0.6518551934137814 0.0 37 0.0 0.0 0.0 0.890192098041427 0.0 38 0.0 0.0 0.0 1.2721326265929853 0.0 39 0.0 0.0 0.0 1.7961730762001429 0.0 40 0.0 0.0 0.0 2.3645727604225404 0.0 41 0.0 0.0 0.0 3.0284575767828277 0.0 42 0.0 0.0 0.0 3.659260930040224 0.0 43 0.0 0.0 0.0 4.297582797639187 0.0 44 0.0 0.0 0.0 4.927634299462426 0.0 45 0.0 0.0 0.0 5.668207962106687 0.0 46 0.0 0.0 0.0 6.392240893199504 0.0 47 0.0 0.0 0.0 7.1726626818540655 0.0 48 0.0 0.0 0.0 7.9064696815909175 0.0 49 0.0 0.0 0.0 8.692154430284576 0.0 50 0.0 0.0 0.0 9.451524378782752 0.0 51 0.0 0.0 0.0 10.29510168790647 0.0 52 0.0 0.0 0.0 11.084545693770911 0.0 53 0.0 0.0 0.0 11.728882372843126 0.0 54 0.0 0.0 0.0 12.406300515018232 0.0 55 0.0 0.0 0.0 13.057403856997857 0.0 56 0.0 0.0 0.0 13.729559039133868 0.0 57 0.0 0.0 0.0 14.402466072704033 0.0 58 0.0 0.0 0.0 15.078380512010826 0.0 59 0.0 0.0 0.0 15.768580128566596 0.0 60 0.0 0.0 0.0 16.471561219503027 0.0 61 0.0 0.0 0.0 17.137701590165783 0.0 62 0.0 0.0 0.0 17.73241607458366 0.0 63 0.0 0.0 0.0 18.345926844855455 0.0 64 0.0 0.0 0.0 19.00454870117665 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTTA 15 0.0022180618 70.01993 48 GTGTACG 15 0.0022213736 69.99361 69 TGTACGC 15 0.0022213736 69.99361 70 TGTGTAC 15 0.0022213736 69.99361 68 CTGGAAG 15 0.0022213736 69.99361 68 ATCGTAT 35 2.9577131E-7 59.994522 39 GCGAAGT 25 2.3844058E-4 55.99489 32 ATATCGT 25 2.3844058E-4 55.99489 37 GAGCATG 20 0.006910179 52.554478 1 GAACTCC 20 0.0069307825 52.51495 46 TGGCGTC 20 0.0069307825 52.51495 60 CTTATGC 20 0.0069307825 52.51495 51 AATTCAC 20 0.0069307825 52.51495 60 TTTCGTC 20 0.006941101 52.49521 18 TATATCG 20 0.006941101 52.49521 36 CCATGAC 20 0.006941101 52.49521 3 GTGTGTA 20 0.006941101 52.49521 67 TCTAAAA 20 0.006941101 52.49521 2 CTGCATG 20 0.006941101 52.49521 54 AACGAGA 20 0.006941101 52.49521 69 >>END_MODULE