##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779781_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 37799 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.315299346543558 34.0 21.0 34.0 12.0 34.0 2 27.434270747903383 34.0 21.0 34.0 12.0 34.0 3 27.456467102304295 34.0 23.0 34.0 11.0 34.0 4 27.607449932537897 34.0 23.0 34.0 12.0 34.0 5 27.75573427868462 34.0 23.0 34.0 11.0 34.0 6 30.270721447657344 37.0 24.0 38.0 12.0 38.0 7 30.605836133231037 37.0 26.0 38.0 12.0 38.0 8 30.109844175771848 36.0 24.0 38.0 11.0 38.0 9 30.611391835762852 37.0 26.0 38.0 11.0 38.0 10-11 29.492817270298154 35.0 22.0 38.0 11.0 38.0 12-13 30.06738273499299 37.0 23.0 38.0 11.0 38.0 14-15 28.988862139210035 35.0 21.0 38.0 11.0 38.0 16-17 29.37071086536681 36.0 22.0 38.0 11.0 38.0 18-19 29.818447577978255 37.0 21.5 38.0 11.0 38.0 20-21 29.13950104500119 35.0 22.0 38.0 11.0 38.0 22-23 29.723206963147174 37.0 22.0 38.0 11.0 38.0 24-25 30.02609857403635 37.0 22.5 38.0 11.0 38.0 26-27 29.08861345538242 36.0 21.0 38.0 11.0 38.0 28-29 29.88863461996349 37.0 22.0 38.0 11.0 38.0 30-31 30.133958570332545 37.0 22.0 38.0 11.0 38.0 32-33 30.291515648562132 37.5 23.0 38.0 11.0 38.0 34-35 30.3744543506442 37.0 23.0 38.0 11.0 38.0 36-37 29.96502552977592 37.0 22.0 38.0 11.0 38.0 38-39 29.885711262202705 37.0 21.5 38.0 11.0 38.0 40-41 29.93534220482023 37.0 22.0 38.0 11.0 38.0 42-43 30.203219661895815 37.0 22.5 38.0 11.0 38.0 44-45 30.280179369824598 37.0 23.0 38.0 11.0 38.0 46-47 30.15534802508003 37.0 22.0 38.0 11.0 38.0 48-49 29.965038757639093 37.0 22.0 38.0 11.0 38.0 50-51 29.45018386729808 36.5 21.0 38.0 11.0 38.0 52-53 29.9919310034657 37.0 23.0 38.0 11.0 38.0 54-55 30.082819651313528 37.0 23.0 38.0 11.0 38.0 56-57 30.00578057620572 37.0 22.5 38.0 11.0 38.0 58-59 30.061747665282148 37.0 22.0 38.0 11.0 38.0 60-61 30.10369321939734 37.0 23.0 38.0 11.0 38.0 62-63 30.031244212809863 37.0 22.0 38.0 11.0 38.0 64-65 30.073956982988967 37.0 22.0 38.0 11.0 38.0 66-67 30.079711103468348 37.0 23.0 38.0 11.0 38.0 68-69 29.611087594909918 37.0 21.5 38.0 11.0 38.0 70-71 29.64151168020318 36.5 22.0 38.0 11.0 38.0 72-73 29.612172279689936 37.0 21.5 38.0 11.0 38.0 74-75 29.819558718484615 37.0 22.0 38.0 11.0 38.0 76 29.107225058863992 36.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 25.0 13 197.0 14 836.0 15 1589.0 16 1955.0 17 2193.0 18 1964.0 19 1444.0 20 1059.0 21 670.0 22 500.0 23 354.0 24 262.0 25 226.0 26 241.0 27 213.0 28 259.0 29 363.0 30 405.0 31 534.0 32 734.0 33 1061.0 34 1575.0 35 2538.0 36 5153.0 37 11449.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.0777269239927 20.931770681764068 10.529379084102754 30.46112331014048 2 16.56657583533956 21.397391465382682 30.540490489166377 31.495542210111378 3 15.455435328976957 22.648747321357707 36.15704119156592 25.73877615809942 4 11.148443080504775 31.495542210111378 28.762665678986217 28.59334903039763 5 11.41564591655864 34.757533268075875 35.998306833514114 17.828513981851373 6 20.475169987036008 38.820541312802604 16.077995608117046 24.626293092044342 7 20.16244245727287 35.528334832530824 18.61474152071538 25.69448118948092 8 17.432139266627864 37.74009206836341 15.966453251494789 28.861315413513942 9 21.925600592655307 19.433273362260557 17.739972483860726 40.90115356122341 10-11 19.162896526179328 28.7668333465619 23.582559462391195 28.48771066486758 12-13 18.98859758194661 24.646154660176194 25.810206619222733 30.55504113865446 14-15 24.929560696853052 26.318504702567562 21.44926385967697 27.302670740902418 16-17 26.4071325581703 25.87139701310899 21.264071325581703 26.45739910313901 18-19 21.783933224863418 25.80922523380557 23.663637445930394 28.74320409540061 20-21 23.492684991666447 25.942485250932563 23.136855472366992 27.427974285033997 22-23 26.40518552814339 25.051921423374562 21.482902308353726 27.059990740128313 24-25 20.680714843181608 30.278979324576373 21.62784237469741 27.41246345754461 26-27 22.841155616699297 30.402402243504945 22.853061008518967 23.903381131276788 28-29 21.90972589692031 28.66044025822838 24.760556672663775 24.669277172187535 30-31 22.343479238594124 27.269600645528264 25.592285408151117 24.794634707726498 32-33 19.233313050609805 29.904230270642078 25.05357284584248 25.808883832905632 34-35 18.925354180721456 31.931161289469156 23.954654285222958 25.188830244586423 36-37 22.9539861879184 27.046013812081604 23.829809753128885 26.170190246871112 38-39 23.148564624950392 25.406799841248844 25.983595713718742 25.46103982008202 40-41 20.003439289918912 27.782848525735147 25.666362421789223 26.547349762556717 42-43 18.052303662843762 27.59501038400995 25.915049539002872 28.43763641414342 44-45 17.584961570515787 25.745770110989113 28.923313005172435 27.74595531332266 46-47 18.938832742473146 28.10863008624795 27.228953912905446 25.723583258373463 48-49 19.785176660449487 28.38869267298967 25.21396351707078 26.612167149490055 50-51 22.94891128925576 28.147736592851285 22.63142577453237 26.271926343360587 52-53 16.643956131183106 29.996428051700647 25.2139861620077 28.145629655108547 54-55 18.1085800460354 27.037860147630767 25.585363917771254 29.268195888562587 56-57 19.864001375861566 28.284538755639048 24.403021603672492 27.44843826482689 58-59 19.44359927506515 28.09651687325546 24.035294273279273 28.424589578400116 60-61 17.84542519976716 26.591522463883155 24.685135206646557 30.877917129703125 62-63 19.172917410802874 26.72804963553862 24.575676998584488 29.523355955074017 64-65 20.1918370046967 26.526427201164253 23.126281669643447 30.155454124495602 66-67 18.389998677073688 30.670723640693215 21.35732239714248 29.581955285090622 68-69 18.773231742000345 32.73674881278358 20.473034644231912 28.01698480098417 70-71 19.590465356226357 30.54578163443477 20.92251117754438 28.94124183179449 72-73 20.88971784594627 29.956215193724617 21.008770189293227 28.145296771035888 74-75 18.756779638595656 29.391221525517896 21.96867476254729 29.88332407333915 76 18.14381713318165 28.56235779670882 23.49330652415472 29.800518545954812 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 3.0 16 5.5 17 5.0 18 5.5 19 8.0 20 17.0 21 24.0 22 29.0 23 38.0 24 67.5 25 93.0 26 108.0 27 130.0 28 182.0 29 227.0 30 242.0 31 281.5 32 401.5 33 497.0 34 566.0 35 771.5 36 951.0 37 994.0 38 1098.5 39 1334.0 40 1593.0 41 1795.0 42 1869.0 43 2006.5 44 2216.5 45 2395.5 46 2502.0 47 2395.0 48 2292.0 49 2262.0 50 2228.0 51 2121.0 52 1897.5 53 1710.0 54 1639.0 55 1587.5 56 1374.5 57 1133.0 58 1053.0 59 904.0 60 698.5 61 592.0 62 542.0 63 473.5 64 370.5 65 309.5 66 271.5 67 260.0 68 213.5 69 150.0 70 131.5 71 130.0 72 117.0 73 88.0 74 79.5 75 87.0 76 74.0 77 59.5 78 50.0 79 42.0 80 39.5 81 33.5 82 29.0 83 28.0 84 24.5 85 20.0 86 13.0 87 7.0 88 8.5 89 8.5 90 6.0 91 5.0 92 5.0 93 2.5 94 0.0 95 1.5 96 3.0 97 2.0 98 2.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.005291145268393344 7 0.002645572634196672 8 0.002645572634196672 9 0.007936717902590016 10-11 0.005291145268393344 12-13 0.0 14-15 0.001322786317098336 16-17 0.001322786317098336 18-19 0.001322786317098336 20-21 0.0 22-23 0.003968358951295008 24-25 0.001322786317098336 26-27 0.002645572634196672 28-29 0.007936717902590016 30-31 0.001322786317098336 32-33 0.0 34-35 0.001322786317098336 36-37 0.015873435805180032 38-39 0.010582290536786687 40-41 0.001322786317098336 42-43 0.001322786317098336 44-45 0.006613931585491679 46-47 0.002645572634196672 48-49 0.001322786317098336 50-51 0.005291145268393344 52-53 0.011905076853885022 54-55 0.005291145268393344 56-57 0.011905076853885022 58-59 0.006613931585491679 60-61 0.013227863170983359 62-63 0.00925950421968835 64-65 0.017196222122278365 66-67 0.010582290536786687 68-69 0.001322786317098336 70-71 0.0 72-73 0.001322786317098336 74-75 0.005291145268393344 76 0.002645572634196672 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 37799.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.32479695230032 #Duplication Level Percentage of deduplicated Percentage of total 1 85.17859586697686 65.86417630096034 2 7.838374161762693 12.12201380988915 3 3.619816614205557 8.397047540940235 4 1.587518817572191 4.910182809069023 5 0.7971807855481047 3.082092118839123 6 0.44135760229916515 2.047673218868224 7 0.2326536198166142 1.2592925738776157 8 0.13001231695634324 0.8042540807957882 9 0.04105652114410839 0.28572184449324056 >10 0.13343369371835226 1.2275457022672558 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.005291145268393344 0.0 5 0.0 0.0 0.0 0.005291145268393344 0.0 6 0.0 0.0 0.0 0.005291145268393344 0.0 7 0.0 0.0 0.0 0.005291145268393344 0.0 8 0.0 0.0 0.0 0.005291145268393344 0.0 9 0.0 0.0 0.0 0.007936717902590016 0.0 10 0.0 0.0 0.0 0.007936717902590016 0.0 11 0.0 0.0 0.0 0.010582290536786687 0.0 12 0.0 0.0 0.0 0.013227863170983359 0.0 13 0.0 0.0 0.0 0.013227863170983359 0.0 14 0.0 0.0 0.0 0.013227863170983359 0.0 15 0.0 0.0 0.0 0.013227863170983359 0.0 16 0.0 0.0 0.0 0.013227863170983359 0.0 17 0.0 0.0 0.0 0.015873435805180032 0.0 18 0.0 0.0 0.0 0.023810153707770048 0.0 19 0.0 0.0 0.0 0.023810153707770048 0.0 20 0.0 0.0 0.0 0.023810153707770048 0.0 21 0.0 0.0 0.0 0.026455726341966718 0.0 22 0.0 0.0 0.0 0.052911452683933435 0.0 23 0.0 0.0 0.0 0.052911452683933435 0.0 24 0.0 0.0 0.0 0.07143046112331014 0.0 25 0.0 0.0 0.0 0.07143046112331014 0.0 26 0.0 0.0 0.0 0.07143046112331014 0.0 27 0.0 0.0 0.0 0.07143046112331014 0.0 28 0.0 0.0 0.0 0.08994946956268685 0.0 29 0.0 0.0 0.0 0.1137596232704569 0.0 30 0.0 0.0 0.0 0.1322786317098336 0.0 31 0.0 0.0 0.0 0.1481520675150136 0.0 32 0.0 0.0 0.0 0.17460779385698033 0.0 33 0.0 0.0 0.0 0.19577237493055372 0.0 34 0.0 0.0 0.0 0.22487367390671711 0.0 35 0.0 0.0 0.0 0.2804306992248472 0.0 36 0.0 0.0 0.0 0.3756713140559274 0.0 37 0.0 0.0 0.0 0.6031905605968412 0.0 38 0.0 0.0 0.0 0.8201275166009683 0.0 39 0.0 0.0 0.0 1.1905076853885024 0.0 40 0.0 0.0 0.0 1.4709383846133495 0.0 41 0.0 0.0 0.0 1.870419852377047 0.0 42 0.0 0.0 0.0 2.169369560041271 0.0 43 0.0 0.0 0.0 2.4286356781925447 0.0 44 0.0 0.0 0.0 2.7857879838090955 0.0 45 0.0 0.0 0.0 3.0741554009365326 0.0 46 0.0 0.0 0.0 3.44188999708987 0.0 47 0.0 0.0 0.0 3.9048652080742876 0.0 48 0.0 0.0 0.0 4.433979734913622 0.0 49 0.0 0.0 0.0 4.777904177359189 0.0 50 0.0 0.0 0.0 5.05568930394984 0.0 51 0.0 0.0 0.0 5.508082224397471 0.0 52 0.0 0.0 0.0 5.9446017090399215 0.0 53 0.0 0.0 0.0 6.185348818751819 0.0 54 0.0 0.0 0.0 6.47900738114765 0.0 55 0.0 0.0 0.0 6.8361596867642005 0.0 56 0.0 0.0 0.0 7.182729701843964 0.0 57 0.0 0.0 0.0 7.531945289557925 0.0 58 0.0 0.0 0.0 7.875869732003492 0.0 59 0.0 0.0 0.0 8.214503029180666 0.0 60 0.0 0.0 0.0 8.690706103336067 0.0 61 0.0 0.0 0.0 9.005529246805471 0.0 62 0.0 0.0 0.0 9.407656287203364 0.0 63 0.0 0.0 0.0 9.783327601259293 0.0 64 0.0 0.0 0.0 10.164290060583614 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGTGG 20 7.829863E-5 70.00001 45 CTTCCGA 15 0.0022082278 70.0 60 TACCTGA 25 2.3614342E-4 56.000004 9 CTTGTCA 20 0.0069003263 52.500004 1 CGGGTGG 20 0.0069003263 52.500004 10 TACCAGG 20 0.0069003263 52.500004 64 GAGTATC 20 0.0069003263 52.500004 28 GCGCCAA 20 0.0069003263 52.500004 47 AAGCCCG 20 0.0069003263 52.500004 15 ACATCCA 20 0.0069003263 52.500004 44 AGGTGTA 20 0.0069003263 52.500004 34 CTAGCAC 20 0.0069003263 52.500004 2 GGATATA 30 5.8070465E-4 46.666664 1 TTCCACC 30 5.8070465E-4 46.666664 46 CGCCGCC 30 5.8070465E-4 46.666664 16 GTGTAGA 45 9.033895E-5 38.88889 36 CCGTATC 45 0.004256389 31.111113 55 AGAGGTG 45 0.004256389 31.111113 32 ACGCCGC 50 0.007123751 28.000002 15 CGACGAA 50 0.007123751 28.000002 22 >>END_MODULE