##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779781_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 37799 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.38310537315802 34.0 34.0 34.0 34.0 34.0 2 33.55390354242176 34.0 34.0 34.0 34.0 34.0 3 33.69493901955078 34.0 34.0 34.0 34.0 34.0 4 33.439032778644936 34.0 34.0 34.0 34.0 34.0 5 33.49054207783275 34.0 34.0 34.0 34.0 34.0 6 37.10545252519908 38.0 37.0 38.0 36.0 38.0 7 37.2066456784571 38.0 38.0 38.0 36.0 38.0 8 37.04613878674039 38.0 37.0 38.0 36.0 38.0 9 36.942882086827694 38.0 37.0 38.0 35.0 38.0 10-11 36.89035424217572 38.0 37.0 38.0 35.0 38.0 12-13 37.058612661710626 38.0 37.5 38.0 35.5 38.0 14-15 37.13014894573931 38.0 37.5 38.0 36.0 38.0 16-17 36.9612952723617 38.0 37.0 38.0 35.0 38.0 18-19 36.76049630942617 38.0 37.0 38.0 34.0 38.0 20-21 36.841622794253816 38.0 37.0 38.0 34.5 38.0 22-23 36.82994259107384 38.0 37.0 38.0 34.5 38.0 24-25 37.009166909177495 38.0 37.0 38.0 35.0 38.0 26-27 36.84182121220138 38.0 37.0 38.0 34.5 38.0 28-29 36.16381385750946 38.0 37.0 38.0 34.0 38.0 30-31 36.58092806688008 38.0 37.0 38.0 34.0 38.0 32-33 36.7546495939046 38.0 37.0 38.0 34.5 38.0 34-35 36.778221646075295 38.0 37.0 38.0 34.5 38.0 36-37 36.621537606815 38.0 37.0 38.0 34.0 38.0 38-39 35.15779517976666 38.0 36.0 38.0 29.0 38.0 40-41 36.06863938199423 38.0 36.5 38.0 32.5 38.0 42-43 36.847099129606605 38.0 37.0 38.0 34.5 38.0 44-45 36.50433873912009 38.0 37.0 38.0 34.0 38.0 46-47 36.715931638403134 38.0 37.0 38.0 34.5 38.0 48-49 36.19119553427339 38.0 37.0 38.0 33.5 38.0 50-51 36.29246805471044 38.0 37.0 38.0 33.5 38.0 52-53 36.22534987698087 38.0 37.0 38.0 34.0 38.0 54-55 36.220653985555174 38.0 37.0 38.0 34.0 38.0 56-57 36.12971242625466 38.0 37.0 38.0 33.0 38.0 58-59 36.213167015000394 38.0 37.0 38.0 34.0 38.0 60-61 35.65255694595095 38.0 36.5 38.0 31.0 38.0 62-63 35.541694224714945 38.0 36.0 38.0 31.0 38.0 64-65 36.093454853303 38.0 37.0 38.0 34.0 38.0 66-67 35.79446546204926 38.0 36.5 38.0 32.5 38.0 68-69 35.67204158840181 38.0 36.5 38.0 31.0 38.0 70-71 33.832125188497045 37.5 33.5 38.0 19.5 38.0 72-73 30.684819704224978 37.0 23.5 38.0 11.0 38.0 74-75 30.13665705441943 37.0 23.0 38.0 11.0 38.0 76 29.91348977486177 37.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 22 1.0 23 3.0 24 11.0 25 22.0 26 57.0 27 95.0 28 194.0 29 355.0 30 562.0 31 961.0 32 1489.0 33 2296.0 34 3857.0 35 6947.0 36 6816.0 37 14133.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.068445291408604 15.71118522047536 13.006193425440685 44.21417606267535 2 13.368078520595784 15.439561893171778 50.51191830471705 20.68044128151538 3 12.846900711659037 18.90526204396942 49.765866821873594 18.48197042249795 4 8.968491229926718 37.35548559485701 33.072303500092595 20.60371967512368 5 8.357363951427287 30.524617053361204 50.951083361993696 10.166935633217811 6 18.016349638879337 53.16807322945052 17.27294372867007 11.54263340300008 7 17.558665573163314 26.35519458186725 19.513743749834653 36.57239609513479 8 15.616815259662953 51.71565385327654 15.14325775814175 17.524273128918754 9 16.4554617847033 17.55337442789492 15.003042408529327 50.98812137887245 10-11 16.578480912193445 33.43871530992884 31.521997936453346 18.460805841424378 12-13 16.857588825101192 17.644646683774702 33.44797481414852 32.04978967697558 14-15 16.507050451070135 17.44093759094156 19.493901955078176 46.558110002910134 16-17 30.260059789941536 30.67541469351041 16.747797560782033 22.316727955766027 18-19 30.912193444271015 22.13815180295775 17.840419058705255 29.109235694065983 20-21 16.55599354480277 19.147331939998413 17.694912563824438 46.60176195137438 22-23 16.681658244927114 32.634461229133045 17.840419058705255 32.84346146723458 24-25 29.983597449667982 32.93076536416307 17.959469827244106 19.12616735892484 26-27 30.74023122304823 34.409640466679015 18.78356570279637 16.06656260747639 28-29 29.679356596735364 22.139474589274847 19.042831820947644 29.138336993042145 30-31 31.01537077700468 19.282256144342444 33.36860763512262 16.33376544353025 32-33 19.135426863144527 33.01013254318897 32.05904918119527 15.79539141247123 34-35 27.799677240138625 34.23503267282203 22.545569988624038 15.4197200984153 36-37 18.819280933358026 31.84475779782534 19.107648350485462 30.228312918331174 38-39 15.536125294319955 21.769094420487313 32.61991057964496 30.074869705547762 40-41 15.579777242784202 18.319267705494855 35.09748935157015 31.003465700150795 42-43 29.583184517904147 18.135640303186634 33.47487334153472 18.806301837374498 44-45 16.389322468848384 32.17016323183153 34.8223497976137 16.618164501706396 46-47 29.50474880287838 19.065319188338318 23.195058070319323 28.234873938463977 48-49 28.181962485780048 17.993862271488663 20.106352019894704 33.717823222836586 50-51 17.881758410392774 17.8433940548478 33.98288155997407 30.291965974785356 52-53 14.721409952763405 17.207616073673208 47.98814454132871 20.082829432234675 54-55 14.201394862565012 18.04057541389304 37.27485674205629 30.483172981485644 56-57 28.55214399152991 17.717046056114345 23.799629433562732 29.93118051879301 58-59 16.027574891499945 18.679210331322114 45.42447337779189 19.868741399386046 60-61 28.150510035325404 32.16331714803594 22.809361893547493 16.87681092309117 62-63 14.986768986504368 49.52897591955544 18.302460968510186 17.18179412543001 64-65 13.93853603037479 51.35932476947704 18.05553718133591 16.646602018812263 66-67 13.639490884072927 51.299251144452384 17.98576380619724 17.075494165277448 68-69 13.955949467557376 51.36583107348369 17.46544083603413 17.212778622924795 70-71 14.710940600608547 48.24844556158222 18.358248445561582 18.68236539224765 72-73 15.755146319521618 42.13631793406361 18.594221304969043 23.514314441445734 74-75 15.87295287985819 39.27163531497209 19.89575892266582 24.959652882503903 76 15.80242340864596 40.298428488279804 19.54600772527647 24.353140377797764 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 2.0 17 4.0 18 8.5 19 10.5 20 9.0 21 10.0 22 24.5 23 37.0 24 63.5 25 92.0 26 91.5 27 121.0 28 174.5 29 198.0 30 244.5 31 297.0 32 376.5 33 450.0 34 498.5 35 641.0 36 849.5 37 964.0 38 1046.0 39 1266.5 40 2596.0 41 4614.5 42 5442.0 43 5131.0 44 4274.0 45 3117.0 46 2506.0 47 2199.5 48 1742.0 49 1455.0 50 1319.0 51 1267.5 52 1062.5 53 841.5 54 774.0 55 743.5 56 623.0 57 464.0 58 395.0 59 330.5 60 235.5 61 195.5 62 186.0 63 163.0 64 126.5 65 99.0 66 85.5 67 86.0 68 91.5 69 84.5 70 70.0 71 68.0 72 66.0 73 59.5 74 48.0 75 41.0 76 40.5 77 41.5 78 41.0 79 39.0 80 36.5 81 29.0 82 23.0 83 22.0 84 16.5 85 9.0 86 6.0 87 5.0 88 4.0 89 2.5 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.04497473478134342 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.001322786317098336 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.00925950421968835 52-53 0.027778512659065058 54-55 0.046297521098441756 56-57 0.05026588004973676 58-59 0.02910129897616339 60-61 0.019841794756475038 62-63 0.023810153707770045 64-65 0.011905076853885022 66-67 0.021164581073573375 68-69 0.003968358951295008 70-71 0.010582290536786687 72-73 0.013227863170983359 74-75 0.005291145268393344 76 0.002645572634196672 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 37799.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.04584777375063 #Duplication Level Percentage of deduplicated Percentage of total 1 54.15098871187255 17.894653297706288 2 19.822272035865822 13.100875684541919 3 10.855816187655112 10.762189475912061 4 6.172444159795052 8.158946003862535 5 3.498518933632215 5.780576205719727 6 2.0814986790489156 4.127093309346808 7 0.9927147546233288 2.2963570464827114 8 0.7525418301176847 1.9894706209158972 9 0.5043631414618525 1.5000396835895131 >10 1.0407493395244578 4.788486467895976 >50 0.04803458490112881 1.0793936347522421 >100 0.06404611320150508 4.96838540702135 >500 0.0 0.0 >1k 0.008005764150188135 2.7910791290774886 >5k 0.008005764150188135 20.76245403317548 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 7848 20.76245403317548 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 1055 2.7910791290774886 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 477 1.2619381465118125 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 413 1.0926214979232254 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 311 0.822773089235165 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 155 0.41006375830048414 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 148 0.39154474986110743 RNA PCR Primer, Index 24 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 135 0.3571523056165507 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 133 0.3518611603481574 No Hit CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 106 0.2804306992248472 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATATCGTATGCCGT 83 0.21958252863832375 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 77 0.20370909283314373 No Hit CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 75 0.1984179475647504 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAGCTCGTATGCCGT 62 0.16402550332019367 No Hit TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT 60 0.1587343580518003 RNA PCR Primer, Index 24 (95% over 22bp) TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCG 51 0.13492420434403027 No Hit TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 46 0.12169634117304691 No Hit CCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 44 0.11640519590465356 No Hit CTTATACACATCTCCGAGCCCACGAGAAGTGATAGCATCTCGTATGCCGT 42 0.11111405063626023 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.005291145268393344 0.0 5 0.0 0.0 0.0 0.007936717902590016 0.0 6 0.0 0.0 0.0 0.007936717902590016 0.0 7 0.0 0.0 0.0 0.007936717902590016 0.0 8 0.0 0.0 0.0 0.007936717902590016 0.0 9 0.0 0.0 0.0 0.007936717902590016 0.0 10 0.0 0.0 0.0 0.007936717902590016 0.0 11 0.0 0.0 0.0 0.010582290536786687 0.0 12 0.0 0.0 0.0 0.013227863170983359 0.0 13 0.0 0.0 0.0 0.013227863170983359 0.0 14 0.0 0.0 0.0 0.013227863170983359 0.0 15 0.0 0.0 0.0 0.013227863170983359 0.0 16 0.0 0.0 0.0 0.013227863170983359 0.0 17 0.0 0.0 0.0 0.013227863170983359 0.0 18 0.0 0.0 0.0 0.021164581073573375 0.0 19 0.0 0.0 0.0 0.021164581073573375 0.0 20 0.0 0.0 0.0 0.021164581073573375 0.0 21 0.0 0.0 0.0 0.023810153707770048 0.0 22 0.0 0.0 0.0 0.031746871610360064 0.0 23 0.0 0.0 0.0 0.031746871610360064 0.0 24 0.0 0.0 0.0 0.04497473478134342 0.0 25 0.0 0.0 0.0 0.04497473478134342 0.0 26 0.0 0.0 0.0 0.04497473478134342 0.0 27 0.0 0.0 0.0 0.04497473478134342 0.0 28 0.0 0.0 0.0 0.060848170586523455 0.0 29 0.0 0.0 0.0 0.0740760337575068 0.0 30 0.0 0.0 0.0 0.08994946956268685 0.0 31 0.0 0.0 0.0 0.10582290536786687 0.0 32 0.0 0.0 0.0 0.1296330590756369 0.0 33 0.0 0.0 0.0 0.1507976401492103 0.0 34 0.0 0.0 0.0 0.18254451175957037 0.0 35 0.0 0.0 0.0 0.24074710971189714 0.0 36 0.0 0.0 0.0 0.34392444244556736 0.0 37 0.0 0.0 0.0 0.5767348342548745 0.0 38 0.0 0.0 0.0 0.7963173628931982 0.0 39 0.0 0.0 0.0 1.1481785232413555 0.0 40 0.0 0.0 0.0 1.4233180771978096 0.0 41 0.0 0.0 0.0 1.8280906902299003 0.0 42 0.0 0.0 0.0 2.1270403978941244 0.0 43 0.0 0.0 0.0 2.3730786528744146 0.0 44 0.0 0.0 0.0 2.724939813222572 0.0 45 0.0 0.0 0.0 3.0159528029842058 0.0 46 0.0 0.0 0.0 3.383687399137543 0.0 47 0.0 0.0 0.0 3.830789174316781 0.0 48 0.0 0.0 0.0 4.357258128521918 0.0 49 0.0 0.0 0.0 4.709119288870076 0.0 50 0.0 0.0 0.0 4.97632212492394 0.0 51 0.0 0.0 0.0 5.415487182200588 0.0 52 0.0 0.0 0.0 5.836133231037858 0.0 53 0.0 0.0 0.0 6.076880340749756 0.0 54 0.0 0.0 0.0 6.362602185242996 0.0 55 0.0 0.0 0.0 6.70917220032276 0.0 56 0.0 0.0 0.0 7.0530966427683275 0.0 57 0.0 0.0 0.0 7.397021085213894 0.0 58 0.0 0.0 0.0 7.730363237122675 0.0 59 0.0 0.0 0.0 8.050477525860472 0.0 60 0.0 0.0 0.0 8.51345273684489 0.0 61 0.0 0.0 0.0 8.81504801714331 0.0 62 0.0 0.0 0.0 9.209238339638615 0.0 63 0.0 0.0 0.0 9.590200798962936 0.0 64 0.0 0.0 0.0 9.965872113018863 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCTTGAC 15 0.002189178 70.152725 56 CTTGACA 15 0.002189178 70.152725 57 TGATCTC 15 0.002212375 69.96689 35 CTCTCCG 15 0.002212375 69.96689 10 CCTTTTT 15 0.002212375 69.96689 62 TTTACAC 35 3.59978E-9 69.96689 2 TGCGGTA 15 0.002212375 69.96689 44 CTTTTTG 15 0.002212375 69.96689 63 CTTTATA 65 0.0 59.202755 2 TGCAAAA 30 8.18316E-6 58.38307 59 GCCTTTT 20 0.006877039 52.544765 61 TTGTAAT 20 0.00691325 52.475166 63 CAACTCG 20 0.00691325 52.475166 36 GACGAAC 20 0.00691325 52.475166 27 CTTAATA 20 0.00691325 52.475166 2 TTTATAC 80 0.0 52.475166 3 ACGAACC 20 0.00691325 52.475166 28 GGACGAA 20 0.00691325 52.475166 26 GCATCTC 1195 0.0 51.52373 35 TCTCGTA 1205 0.0 51.38647 38 >>END_MODULE