##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779780_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 136084 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.020244848769877 34.0 31.0 34.0 12.0 34.0 2 30.694350548190823 34.0 32.0 34.0 21.0 34.0 3 30.280811851503483 34.0 32.0 34.0 11.0 34.0 4 30.349614943711238 34.0 32.0 34.0 12.0 34.0 5 30.954550130801564 34.0 33.0 34.0 21.0 34.0 6 33.78026072131919 38.0 34.0 38.0 21.0 38.0 7 33.99332030216631 38.0 35.0 38.0 21.0 38.0 8 33.27286822844714 38.0 34.0 38.0 11.0 38.0 9 34.09293524587755 38.0 36.0 38.0 21.0 38.0 10-11 32.763385115075984 37.5 30.5 38.0 16.5 38.0 12-13 33.71689177272861 38.0 34.0 38.0 21.0 38.0 14-15 32.312637782546076 37.0 30.0 38.0 11.0 38.0 16-17 33.02828400105817 37.5 32.5 38.0 16.0 38.0 18-19 33.931788454190055 38.0 35.0 38.0 21.0 38.0 20-21 32.640549219599656 37.5 30.5 38.0 16.0 38.0 22-23 33.5553702125158 38.0 35.0 38.0 16.0 38.0 24-25 33.86221010552306 38.0 35.0 38.0 21.0 38.0 26-27 32.74707533582199 38.0 32.5 38.0 11.0 38.0 28-29 33.99323212133682 38.0 35.0 38.0 21.0 38.0 30-31 34.32549381264513 38.0 37.0 38.0 21.0 38.0 32-33 34.430781723053414 38.0 37.0 38.0 21.0 38.0 34-35 34.43647306075659 38.0 36.5 38.0 22.0 38.0 36-37 33.93974677405132 38.0 35.5 38.0 21.0 38.0 38-39 33.91701449104964 38.0 35.0 38.0 21.0 38.0 40-41 33.92092751535816 38.0 35.5 38.0 21.0 38.0 42-43 34.2338555598013 38.0 36.5 38.0 21.5 38.0 44-45 34.3632792980806 38.0 36.5 38.0 21.5 38.0 46-47 34.26666617677317 38.0 36.0 38.0 21.0 38.0 48-49 34.03230357720231 38.0 35.5 38.0 21.0 38.0 50-51 33.437141765380204 38.0 35.0 38.0 16.0 38.0 52-53 34.011897063578374 38.0 35.5 38.0 21.0 38.0 54-55 34.13062520208107 38.0 36.0 38.0 21.0 38.0 56-57 34.161554628023865 38.0 36.0 38.0 21.0 38.0 58-59 34.317847799888305 38.0 37.0 38.0 21.5 38.0 60-61 34.25541577261103 38.0 36.0 38.0 21.0 38.0 62-63 34.21094324093942 38.0 36.0 38.0 21.0 38.0 64-65 34.27158593221833 38.0 36.5 38.0 21.0 38.0 66-67 34.06386129155521 38.0 36.0 38.0 21.0 38.0 68-69 33.450475441638986 38.0 34.0 38.0 15.5 38.0 70-71 33.45731313012551 38.0 34.0 38.0 18.5 38.0 72-73 33.768268128508865 38.0 34.5 38.0 20.5 38.0 74-75 33.87869624643602 38.0 35.0 38.0 21.0 38.0 76 32.932894388759884 37.0 33.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 22.0 13 323.0 14 1103.0 15 2018.0 16 2619.0 17 2771.0 18 2562.0 19 2168.0 20 1587.0 21 1212.0 22 906.0 23 742.0 24 642.0 25 684.0 26 787.0 27 892.0 28 1108.0 29 1467.0 30 1789.0 31 2404.0 32 3331.0 33 4755.0 34 7256.0 35 11998.0 36 23951.0 37 56987.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.21560212809735 19.36671467622939 11.963934040739543 28.453749154933718 2 21.333882014050147 22.855001322712443 31.166044501925285 24.645072161312132 3 18.599541459686662 21.128861585491315 31.00805384909321 29.26354310572881 4 13.238881867082098 22.567678786631788 32.69598189353635 31.49745745274977 5 13.028717556803151 35.49351870903266 34.312630434143614 17.165133300020578 6 27.15421584044914 38.602460281300985 18.058229596860716 16.185094281389162 7 26.597785110119858 29.410122061449602 22.1231784478134 21.86891438061714 8 23.087210840363305 37.8281061697187 18.375415184738838 20.709267805179156 9 23.987477125912207 19.772765688500858 19.79334318113338 36.44641400445356 10-11 23.129804088711218 26.32126218015608 24.843109301744537 25.705824429388162 12-13 23.218012404103348 23.818009464742364 26.08940066429558 26.874577466858707 14-15 24.06022772782887 25.198132029232053 23.291214585162788 27.45042565777629 16-17 24.815278854526817 26.505417629617114 23.635121083746377 25.044182432109697 18-19 21.913993033612087 26.45353536838083 26.09860231331109 25.533869284695992 20-21 23.371226595338175 26.159577907762856 25.79546456600335 24.673730930895623 22-23 24.870207410945568 25.810078445060903 24.614847610824317 24.704866533169216 24-25 21.895128251292434 28.243943842064073 24.764018356781463 25.09690954986203 26-27 22.711340054672114 27.904088651127246 25.62167484788807 23.762896446312574 28-29 22.016086657774544 27.531039753666164 26.602511105966908 23.850362482592384 30-31 22.50897426947426 26.957713462690187 26.261082350174707 24.272229917660848 32-33 21.204550130801564 27.965080391522886 26.125775256459242 24.704594221216308 34-35 21.46576082363618 28.650164058509915 26.219232140035786 23.66484297781811 36-37 23.515533702290917 26.74464754261019 25.62344277115075 24.116375983948142 38-39 23.06519294790296 26.00515899553916 26.893652671727676 24.0359953848302 40-41 21.85042841815964 26.65414970385503 26.69824076659661 24.79718111138872 42-43 20.431506119494568 26.414685317254733 27.200243971443584 25.953564591807115 44-45 20.459589353165097 24.82105851056012 29.024162612619232 25.69518952365555 46-47 20.723332488232895 25.560246475380023 28.244358954574018 25.472062081813075 48-49 20.698840776734702 26.239229878933735 28.225892381459776 24.836036962871788 50-51 22.598637556125485 25.97057591546087 26.726019444587333 24.704767083826308 52-53 18.72329010755612 27.18740928282446 27.81356449141425 26.275736118205167 54-55 19.11547478191853 26.36966922166778 27.836161472150977 26.678694524262713 56-57 19.586443094584514 26.364895802327588 27.28321702734385 26.765444075744043 58-59 19.554848382402657 26.465097820175504 27.171372716181853 26.80868108123999 60-61 18.735553195476978 25.89749337605974 27.864647452033854 27.50230597642943 62-63 19.565880420523488 26.399938266387885 26.995226668920434 27.038954644168196 64-65 20.251587581584054 25.956958899276767 25.767698594696302 28.02375492444288 66-67 19.656847613587924 27.31989828166571 24.938998397789245 28.084255706957123 68-69 19.864053056050558 27.71774475042713 24.600518068083698 27.817684125438614 70-71 21.067812054496553 26.658926235652032 24.47090724710101 27.8023544627504 72-73 21.60300126399953 26.87872953349599 23.898409712219642 27.619859490284842 74-75 21.44991015686721 26.805589749431363 23.763049301648778 27.981450792052648 76 21.15740740740741 26.078777189888303 24.496619635508523 28.26719576719577 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.5 12 1.0 13 0.5 14 1.0 15 2.0 16 6.5 17 11.0 18 16.0 19 27.5 20 35.5 21 37.0 22 58.0 23 115.5 24 192.0 25 232.0 26 305.0 27 486.5 28 626.0 29 657.0 30 810.5 31 1149.5 32 1606.5 33 1878.0 34 2193.5 35 2825.5 36 3489.0 37 3836.0 38 4348.5 39 5608.0 40 6789.0 41 7350.5 42 7478.0 43 7733.5 44 8655.5 45 9294.0 46 9266.0 47 9099.0 48 8782.5 49 8169.5 50 7706.0 51 7380.5 52 6526.0 53 5449.5 54 4902.0 55 4544.5 56 3816.5 57 3109.5 58 2773.0 59 2446.5 60 1918.0 61 1598.0 62 1480.0 63 1379.0 64 1148.5 65 981.5 66 847.0 67 750.0 68 699.0 69 640.0 70 576.0 71 520.0 72 512.5 73 480.5 74 412.5 75 369.0 76 331.0 77 272.0 78 244.0 79 237.0 80 215.5 81 190.0 82 152.0 83 118.0 84 106.5 85 84.5 86 73.5 87 73.0 88 53.0 89 30.0 90 19.5 91 15.0 92 18.0 93 15.5 94 10.0 95 5.0 96 3.0 97 4.5 98 7.5 99 8.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0014696804914611564 7 0.0036742012286528907 8 0.0 9 0.009552923194497517 10-11 0.0014696804914611564 12-13 0.0 14-15 3.674201228652891E-4 16-17 3.674201228652891E-4 18-19 0.0014696804914611564 20-21 0.0 22-23 0.0011022603685958672 24-25 0.002571940860057024 26-27 0.0 28-29 0.006246142088709915 30-31 3.674201228652891E-4 32-33 0.0 34-35 0.0033067811057876017 36-37 0.018371006143264455 38-39 0.00808324270303636 40-41 0.0014696804914611564 42-43 0.0018371006143264453 44-45 0.004409041474383469 46-47 0.00404162135151818 48-49 0.0011022603685958672 50-51 0.0036742012286528907 52-53 0.011390023808823962 54-55 0.00808324270303636 56-57 0.015064225037476854 58-59 0.013227124423150407 60-61 0.018003586020399167 62-63 0.011390023808823962 64-65 0.02057552688045619 66-67 0.01616648540607272 68-69 0.0011022603685958672 70-71 0.0014696804914611564 72-73 0.005878721965844626 74-75 0.009920343317362804 76 0.002939360982922313 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 136084.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.36577408071485 #Duplication Level Percentage of deduplicated Percentage of total 1 76.5618077093487 46.982745951030246 2 10.42163120142739 12.790629317186445 3 5.307212396268666 9.770435907233766 4 2.968542312804608 7.286675876664413 5 1.5148067872923876 4.647864554245907 6 0.9184638781448706 3.381734810852121 7 0.577183297608641 2.479350989094971 8 0.43588116250943015 2.1398547955674436 9 0.2646421343807254 1.46159724875812 >10 1.0298291202145875 9.059110549366569 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 7.348402457305782E-4 0.0 2 0.0 0.0 0.0 7.348402457305782E-4 0.0 3 0.0 0.0 0.0 7.348402457305782E-4 0.0 4 0.0 0.0 0.0 0.012492284177419828 0.0 5 0.0 0.0 0.0 0.013227124423150407 0.0 6 0.0 0.0 0.0 0.013961964668880986 0.0 7 0.0 0.0 0.0 0.013961964668880986 0.0 8 0.0 0.0 0.0 0.013961964668880986 0.0 9 0.0 0.0 0.0 0.015431645160342141 0.0 10 0.0 0.0 0.0 0.016901325651803297 0.0 11 0.0 0.0 0.0 0.017636165897533876 0.0 12 0.0 0.0 0.0 0.017636165897533876 0.0 13 0.0 0.0 0.0 0.019105846388995033 0.0 14 0.0 0.0 0.0 0.019105846388995033 0.0 15 0.0 0.0 0.0 0.020575526880456187 0.0 16 0.0 0.0 0.0 0.021310367126186766 0.0 17 0.0 0.0 0.0 0.021310367126186766 0.0 18 0.0 0.0 0.0 0.022780047617647924 0.0 19 0.0 0.0 0.0 0.02424972810910908 0.0 20 0.0 0.0 0.0 0.02865876958349255 0.0 21 0.0 0.0 0.0 0.030863290320684283 0.0 22 0.0 0.0 0.0 0.03821169277799007 0.0 23 0.0 0.0 0.0 0.0404162135151818 0.0 24 0.0 0.0 0.0 0.041151053760912375 0.0 25 0.0 0.0 0.0 0.041151053760912375 0.0 26 0.0 0.0 0.0 0.04482525498956527 0.0 27 0.0 0.0 0.0 0.07715822580171071 0.0 28 0.0 0.0 0.0 0.10361247464801152 0.0 29 0.0 0.0 0.0 0.13080156374004293 0.0 30 0.0 0.0 0.0 0.15211193086622968 0.0 31 0.0 0.0 0.0 0.19252814438141147 0.0 32 0.0 0.0 0.0 0.2189823932277123 0.0 33 0.0 0.0 0.0 0.2498456835483966 0.0 34 0.0 0.0 0.0 0.30422386173245936 0.0 35 0.0 0.0 0.0 0.3630110813909056 0.0 36 0.0 0.0 0.0 0.522471414714441 0.0 37 0.0 0.0 0.0 0.8619676082419682 0.0 38 0.0 0.0 0.0 1.325651803297963 0.0 39 0.0 0.0 0.0 1.93189500602569 0.0 40 0.0 0.0 0.0 2.602804150377708 0.0 41 0.0 0.0 0.0 3.4067193792069603 0.0 42 0.0 0.0 0.0 4.456071250110226 0.0 43 0.0 0.0 0.0 5.624467240821845 0.0 44 0.0 0.0 0.0 6.544487228476529 0.0 45 0.0 0.0 0.0 7.432909085564798 0.0 46 0.0 0.0 0.0 8.223597189970901 0.0 47 0.0 0.0 0.0 9.015754974868464 0.0 48 0.0 0.0 0.0 9.775579788953882 0.0 49 0.0 0.0 0.0 10.42150436495106 0.0 50 0.0 0.0 0.0 11.074042503159813 0.0 51 0.0 0.0 0.0 11.926457188207284 0.0 52 0.0 0.0 0.0 13.085300255724405 0.0 53 0.0 0.0 0.0 14.31101378560301 0.0 54 0.0 0.0 0.0 15.360365656506275 0.0 55 0.0 0.0 0.0 16.10255430469416 0.0 56 0.0 0.0 0.0 16.838129390670467 0.0 57 0.0 0.0 0.0 17.572969636401048 0.0 58 0.0 0.0 0.0 18.257105905176214 0.0 59 0.0 0.0 0.0 18.90009112019047 0.0 60 0.0 0.0 0.0 19.513682725375503 0.0 61 0.0 0.0 0.0 20.135357573263573 0.0 62 0.0 0.0 0.0 20.804062196878398 0.0 63 0.0 0.0 0.0 21.515387554745597 0.0 64 0.0 0.0 0.0 22.287704653008436 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTACA 15 0.0022186895 70.01581 37 TTCGGTA 20 7.909109E-5 69.99008 26 CCGGAAT 15 0.002221928 69.990074 3 CGTTACT 15 0.002221928 69.990074 17 GGGCGCC 15 0.002221928 69.990074 9 GCCTAAA 30 8.3476225E-6 58.32506 1 CGTTCGG 25 2.3851958E-4 55.99206 24 GTTCGGT 25 2.3851958E-4 55.99206 25 GTAGATC 75 0.0 55.99206 38 TCGCCGT 20 0.0069327373 52.51186 52 TCGTTCG 20 0.0069428273 52.49256 23 GTACATG 20 0.0069428273 52.49256 1 GACGTTA 20 0.0069428273 52.49256 15 GGCGCCG 20 0.0069428273 52.49256 10 GGTCTAT 20 0.0069428273 52.49256 27 GACGATC 20 0.0069428273 52.49256 23 TGTACTT 20 0.0069428273 52.49256 10 TACCGTC 20 0.0069428273 52.49256 7 GACCGCG 30 5.8545166E-4 46.677208 59 CGACGAT 45 1.6764116E-6 46.66005 22 >>END_MODULE