##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779778_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 51067 Sequences flagged as poor quality 0 Sequence length 76 %GC 53 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.987702430140796 23.0 12.0 32.0 12.0 34.0 2 23.04848532320285 23.0 12.0 32.0 12.0 34.0 3 22.91511152015979 23.0 11.0 32.0 11.0 34.0 4 22.319247263399063 23.0 12.0 32.0 11.0 34.0 5 22.63087708304776 23.0 11.0 32.0 11.0 34.0 6 23.562163432353575 26.0 12.0 34.0 11.0 38.0 7 24.41868525662365 26.0 12.0 34.0 12.0 38.0 8 23.61497640354828 26.0 11.0 34.0 11.0 38.0 9 25.06419018152623 26.0 12.0 36.0 12.0 38.0 10-11 24.038067636634224 26.0 11.0 35.0 11.0 38.0 12-13 24.6753089079053 26.5 11.0 35.0 11.0 38.0 14-15 23.314792331642742 25.0 11.0 34.0 11.0 38.0 16-17 23.580619578201187 24.5 11.0 34.5 11.0 37.5 18-19 23.980692032036345 26.0 11.5 34.0 11.0 38.0 20-21 23.186930894706954 23.0 11.0 34.0 11.0 37.5 22-23 23.358626901913173 24.5 11.0 32.5 11.0 37.5 24-25 23.198631209979048 23.0 11.0 34.0 11.0 37.5 26-27 22.48641001037852 23.0 11.0 32.5 10.0 37.0 28-29 22.951348228797464 23.0 11.0 34.0 11.0 38.0 30-31 23.40332308535845 24.0 11.0 34.0 11.0 38.0 32-33 23.586269019131727 24.0 11.0 35.0 11.0 38.0 34-35 23.57921945679206 24.5 11.0 35.0 11.0 38.0 36-37 23.341198817240098 24.0 11.0 34.0 11.0 38.0 38-39 23.515792977852627 24.5 11.0 34.0 11.0 37.0 40-41 22.6188536628351 23.0 11.0 34.0 11.0 37.0 42-43 22.95906358313588 23.5 11.0 34.0 11.0 37.5 44-45 23.71782168523704 26.0 11.0 34.5 11.0 38.0 46-47 23.35092133863356 24.5 11.0 35.0 11.0 38.0 48-49 22.519993342080014 22.5 11.0 34.0 11.0 37.5 50-51 22.181731842481447 23.0 11.0 31.0 11.0 37.0 52-53 22.576947931149277 22.5 11.0 34.0 11.0 37.5 54-55 22.497473906828283 23.0 11.0 33.0 11.0 37.5 56-57 22.877445316936573 23.0 11.0 34.0 11.0 38.0 58-59 22.968374880059528 23.0 11.0 34.0 11.0 38.0 60-61 23.513864139268023 23.5 11.0 35.5 11.0 38.0 62-63 23.553655002251944 24.0 11.0 35.5 11.0 38.0 64-65 23.55074705778683 24.0 11.0 35.0 11.0 38.0 66-67 23.073648344331957 24.0 11.0 34.0 11.0 38.0 68-69 22.809260383417865 23.5 11.0 34.0 11.0 37.5 70-71 22.782922435232145 23.5 11.0 34.0 11.0 37.5 72-73 22.586337556543363 23.0 11.0 33.0 11.0 37.0 74-75 22.198993479154836 22.5 11.0 33.5 11.0 37.0 76 21.734799381205082 21.0 11.0 33.0 11.0 37.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 3 1.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 14.0 12 67.0 13 399.0 14 1099.0 15 1819.0 16 2932.0 17 4486.0 18 5733.0 19 5860.0 20 4881.0 21 3589.0 22 2390.0 23 1688.0 24 1277.0 25 936.0 26 805.0 27 698.0 28 729.0 29 735.0 30 788.0 31 920.0 32 1102.0 33 1330.0 34 1714.0 35 2087.0 36 2038.0 37 950.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.798147531674076 15.996631875771044 18.544265376857854 41.66095521569703 2 14.234241290853191 11.527992637123779 52.607358959797914 21.630407112225118 3 12.691170423169563 12.671588305559364 52.64456498325729 21.992676288013786 4 12.385931931226256 24.715074609329104 25.026436376454004 37.87255708299064 5 14.432020678716196 19.012277987741594 45.685080384592794 20.87062094894942 6 19.121937846358705 36.9397066598782 15.330839877024301 28.607515616738795 7 18.68134020012924 20.408482973348736 17.25184561458476 43.65833121193726 8 16.05373438295539 37.069674538832096 15.154897583519366 31.72169349469314 9 16.08310813457095 16.27697489523362 15.93428112638546 51.70563584380997 10-11 17.80049347902714 22.983981514118984 29.283672110601966 29.93185289625191 12-13 16.020444131124428 14.927740571025733 35.77820859280148 33.27360670504837 14-15 24.23824070810324 21.716993694434652 21.99604433478244 32.04872126267967 16-17 29.791838013551093 15.5367563545216 21.08447890964634 33.58692672228097 18-19 17.422551208240318 14.735832060470763 31.41033172756825 36.431285003720674 20-21 29.797712763874202 14.698625308424393 22.74703325108683 32.75662867661458 22-23 32.38162378098931 13.191751850546352 20.64485176046685 33.781772607997496 24-25 18.41930051306153 23.36192378490581 19.484588571652374 38.73418713038029 26-27 28.366231935142753 22.20557709630674 21.333176673324715 28.095014295225784 28-29 20.554772255512475 21.707202443896133 23.955273567540047 33.78275173305135 30-31 19.122312301727177 20.80738651940626 26.525476833901223 33.54482434496534 32-33 21.036501782007598 18.94606979203384 26.40210707711589 33.61532134884268 34-35 20.24341048838758 20.19837073591039 25.55810128069557 34.00011749500646 36-37 28.712842204206325 13.386597736262877 31.835272000939963 26.06528805859084 38-39 28.464144440527946 10.695962088277915 38.211334351623385 22.628559119570753 40-41 23.41479653781381 23.692868053107745 23.54502016997611 29.34731523910234 42-43 14.947323072102769 24.64066110523636 28.630595699682765 31.781420122978105 44-45 15.524027728821524 15.488779226882857 33.85422786198254 35.132965182313086 46-47 27.710218149061998 14.736811185524616 26.359025574746408 31.19394509066698 48-49 26.18865781537618 15.274350840089296 31.098969960443345 27.438021384091176 50-51 41.487486781811775 12.59742294285826 23.569498296322404 22.34559197900756 52-53 15.057964203188032 18.709121529001685 31.965495633102258 34.26741863470802 54-55 26.258175694199664 15.79230799357694 25.069517878823483 32.87999843339991 56-57 25.9326348771174 16.651326740428864 23.5797512973661 33.83628708508763 58-59 16.066463008655465 20.380487995926842 30.1090745309991 33.443974464418595 60-61 15.778600242823012 17.81518035483492 29.672384756981163 36.73383464536091 62-63 16.103669760701838 20.749618141229 29.040849097246703 34.10586300082247 64-65 15.9803000039165 22.76367837700231 27.82183840520111 33.434183213880075 66-67 13.519758743586733 34.55430227548663 18.47217326596953 33.453765714957115 68-69 14.689896289332196 33.183496391182146 18.629726474131093 33.49688084535457 70-71 13.473739866055693 36.27364587005052 17.333450828339796 32.91916343555399 72-73 12.130380292170916 39.12387890181334 16.45909215525007 32.28664865076568 74-75 15.5367563545216 26.946500607057533 21.273450045039752 36.24329299338112 76 17.82595073042729 23.824070810323896 23.947440567109233 34.402537892139584 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.0 16 0.5 17 0.0 18 0.5 19 2.5 20 8.5 21 13.0 22 13.0 23 27.0 24 49.0 25 57.0 26 63.0 27 79.5 28 128.5 29 167.0 30 193.0 31 284.0 32 407.5 33 466.0 34 528.5 35 693.5 36 900.0 37 1004.0 38 1099.0 39 1331.5 40 1558.0 41 1763.0 42 1879.0 43 1923.0 44 2128.0 45 2296.0 46 2303.0 47 2329.0 48 2364.0 49 2325.5 50 2278.0 51 2214.0 52 2091.5 53 1968.0 54 1903.0 55 1857.5 56 1779.0 57 1681.5 58 1617.0 59 1556.0 60 1500.5 61 1477.0 62 1448.0 63 1416.5 64 1335.5 65 1249.0 66 1209.0 67 1206.0 68 1176.5 69 1045.5 70 902.5 71 861.0 72 849.5 73 751.0 74 638.5 75 613.0 76 523.0 77 402.5 78 316.5 79 261.0 80 233.5 81 168.5 82 105.0 83 79.0 84 63.0 85 30.5 86 10.5 87 7.0 88 8.0 89 5.5 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0019582117610198366 5 0.0 6 0.0 7 0.0 8 0.0019582117610198366 9 0.0019582117610198366 10-11 0.0019582117610198366 12-13 0.0019582117610198366 14-15 0.0019582117610198366 16-17 0.0019582117610198366 18-19 0.0019582117610198366 20-21 0.0019582117610198366 22-23 0.0019582117610198366 24-25 0.0019582117610198366 26-27 0.0019582117610198366 28-29 0.0019582117610198366 30-31 0.0019582117610198366 32-33 0.0019582117610198366 34-35 0.0019582117610198366 36-37 0.0019582117610198366 38-39 0.0019582117610198366 40-41 0.0019582117610198366 42-43 0.0019582117610198366 44-45 0.0019582117610198366 46-47 0.0019582117610198366 48-49 0.0019582117610198366 50-51 0.0019582117610198366 52-53 0.0019582117610198366 54-55 0.0019582117610198366 56-57 0.003916423522039673 58-59 0.0019582117610198366 60-61 0.0019582117610198366 62-63 0.0019582117610198366 64-65 0.0019582117610198366 66-67 0.0019582117610198366 68-69 0.022519435251728122 70-71 0.0019582117610198366 72-73 0.0019582117610198366 74-75 0.0019582117610198366 76 0.0019582117610198366 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 51067.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.44974249515343 #Duplication Level Percentage of deduplicated Percentage of total 1 99.51364549285236 98.96606419018153 2 0.42925215610601347 0.8537803278046489 3 0.051195211278698846 0.15274051735954725 4 0.0039380931752845275 0.015665694088158693 5 0.0 0.0 6 0.0019690465876422637 0.01174927056611902 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.003916423522039673 0.0 2 0.0 0.0 0.0 0.003916423522039673 0.0 3 0.0 0.0 0.0 0.003916423522039673 0.0 4 0.0 0.0 0.0 0.013707482327138856 0.0 5 0.0 0.0 0.0 0.015665694088158693 0.0 6 0.0 0.0 0.0 0.017623905849178532 0.0 7 0.0 0.0 0.0 0.017623905849178532 0.0 8 0.0 0.0 0.0 0.021540329371218202 0.0 9 0.0 0.0 0.0 0.025456752893257877 0.0 10 0.0 0.0 0.0 0.031331388176317386 0.0 11 0.0 0.0 0.0 0.031331388176317386 0.0 12 0.0 0.0 0.0 0.031331388176317386 0.0 13 0.0 0.0 0.0 0.031331388176317386 0.0 14 0.0 0.0 0.0 0.031331388176317386 0.0 15 0.0 0.0 0.0 0.031331388176317386 0.0 16 0.0 0.0 0.0 0.031331388176317386 0.0 17 0.0 0.0 0.0 0.031331388176317386 0.0 18 0.0 0.0 0.0 0.033289599937337225 0.0 19 0.0 0.0 0.0 0.048955294025495914 0.0 20 0.0 0.0 0.0 0.05091350578651575 0.0 21 0.0 0.0 0.0 0.06070456459161494 0.0 22 0.0 0.0 0.0 0.09399416452895216 0.0 23 0.0 0.0 0.0 0.1116180703781307 0.0 24 0.0 0.0 0.0 0.1174927056611902 0.0 25 0.0 0.0 0.0 0.11945091742221003 0.0 26 0.0 0.0 0.0 0.11945091742221003 0.0 27 0.0 0.0 0.0 0.14490767031546792 0.0 28 0.0 0.0 0.0 0.18407190553586464 0.0 29 0.0 0.0 0.0 0.21736150547320188 0.0 30 0.0 0.0 0.0 0.2624003759766581 0.0 31 0.0 0.0 0.0 0.30156461119705485 0.0 32 0.0 0.0 0.0 0.36031096402764995 0.0 33 0.0 0.0 0.0 0.407308046292126 0.0 34 0.0 0.0 0.0 0.4621379756006815 0.0 35 0.0 0.0 0.0 0.6618755752247047 0.0 36 0.0 0.0019582117610198366 0.0 0.7832847044079346 0.0 37 0.0 0.0019582117610198366 0.0 1.0300193862964342 0.0 38 0.0 0.0019582117610198366 0.0 1.2434644682475964 0.0 39 0.0 0.0019582117610198366 0.0 1.4804080913309965 0.0 40 0.0 0.0019582117610198366 0.0 1.750641314351734 0.0 41 0.0 0.0019582117610198366 0.0 1.968002819824936 0.0 42 0.0 0.0019582117610198366 0.0 2.15794936064386 0.0 43 0.0 0.0019582117610198366 0.0 2.3988094072493 0.0 44 0.0 0.0019582117610198366 0.0 2.6435858773767795 0.0 45 0.0 0.0019582117610198366 0.0 2.8354906299567237 0.0 46 0.0 0.0019582117610198366 0.0 3.058726770712985 0.0 47 0.0 0.0019582117610198366 0.0 3.2682554291421075 0.0 48 0.0 0.0019582117610198366 0.0 3.3916227700863573 0.0 49 0.0 0.0019582117610198366 0.0 3.548279710967944 0.0 50 0.0 0.0019582117610198366 0.0 3.751933734114007 0.0 51 0.0 0.0019582117610198366 0.0 4.0025848395245465 0.0 52 0.0 0.0019582117610198366 0.0 4.172949262733272 0.0 53 0.0 0.0019582117610198366 0.0 4.366812227074236 0.0 54 0.0 0.0019582117610198366 0.0 4.550884132610101 0.0 55 0.0 0.0019582117610198366 0.0 4.725164979340866 0.0 56 0.0 0.0019582117610198366 0.0 4.864198014373274 0.0 57 0.0 0.0019582117610198366 0.0 4.985607143556504 0.0 58 0.0 0.0019582117610198366 0.0 5.136389449155032 0.0 59 0.0 0.0019582117610198366 0.0 5.302837448841718 0.0 60 0.0 0.0019582117610198366 0.0 5.406622672175769 0.0 61 0.0 0.0019582117610198366 0.0 5.506491471987781 0.0 62 0.0 0.0019582117610198366 0.0 5.592652789472654 0.0 63 0.0 0.0019582117610198366 0.0 5.6748976834354865 0.0 64 0.0 0.0019582117610198366 0.0 5.731685824505062 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTACGTA 15 0.002204974 70.06176 53 TCGTTGG 15 0.0022135722 69.99315 45 AGTTTAG 15 0.0022135722 69.99315 35 ATGTGTC 15 0.0022135722 69.99315 34 AACGGCT 15 0.0022135722 69.99315 29 CTAGTTA 15 0.0022135722 69.99315 25 TACGAAC 15 0.0022135722 69.99315 23 ACGTGTA 15 0.0022135722 69.99315 34 AACTGTA 15 0.0022135722 69.99315 34 ATAAGGG 15 0.0022135722 69.99315 30 AGACACT 15 0.0022135722 69.99315 67 CATAAGG 15 0.0022135722 69.99315 29 TAAGGGT 15 0.0022135722 69.99315 31 GAACAGA 15 0.0022135722 69.99315 31 TGTACTT 15 0.0022135722 69.99315 37 TCGCGTA 15 0.0022135722 69.99315 34 AGTGTCG 15 0.0022135722 69.99315 35 ATCTGAG 15 0.0022135722 69.99315 11 ACGCGTG 15 0.0022135722 69.99315 32 CTAGTGT 20 7.860195E-5 69.99314 33 >>END_MODULE