##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779777_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 56184 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.546792681190375 23.0 12.0 34.0 12.0 34.0 2 23.89707034031041 23.0 12.0 34.0 12.0 34.0 3 23.741136266552754 23.0 11.0 33.0 11.0 34.0 4 23.729976505766768 23.0 12.0 34.0 11.0 34.0 5 23.93448312686886 23.0 11.0 34.0 11.0 34.0 6 25.078385305425034 27.0 12.0 36.0 11.0 38.0 7 26.06090701979211 27.0 12.0 37.0 12.0 38.0 8 25.289246048697137 27.0 11.0 36.0 11.0 38.0 9 26.979211163320517 31.0 12.0 37.0 12.0 38.0 10-11 25.842241563434428 27.5 11.0 37.0 11.0 38.0 12-13 26.194441478000854 29.5 11.0 36.5 11.0 38.0 14-15 25.16327602164317 26.5 11.0 36.5 11.0 38.0 16-17 25.259646874555035 27.0 11.0 36.0 11.0 38.0 18-19 25.673955218567563 27.0 11.5 36.5 11.0 38.0 20-21 24.780987469742275 26.5 11.0 35.0 11.0 38.0 22-23 24.94898013669372 26.5 11.0 35.5 11.0 38.0 24-25 25.059616616830414 26.5 11.0 36.5 11.0 38.0 26-27 24.19359604157767 24.5 11.0 35.0 10.0 38.0 28-29 24.993129716645306 26.0 11.0 37.0 11.0 38.0 30-31 25.503889007546633 27.0 11.0 37.0 11.0 38.0 32-33 25.660170155204327 27.0 11.0 37.0 11.0 38.0 34-35 25.68370888509184 27.0 11.0 37.0 11.0 38.0 36-37 24.92189947315962 26.5 11.0 35.5 11.0 38.0 38-39 24.6138135412217 25.5 11.0 34.0 11.0 37.5 40-41 24.163151431012388 26.0 11.0 34.5 11.0 38.0 42-43 24.693631638900754 26.0 11.0 35.5 11.0 38.0 44-45 25.713530542503204 27.0 11.0 37.0 11.0 38.0 46-47 25.11295920546775 26.5 11.0 36.0 11.0 38.0 48-49 24.37306884522284 25.5 11.0 35.0 11.0 38.0 50-51 23.487540936921544 23.5 11.0 34.0 11.0 37.5 52-53 24.595089349280933 25.5 11.0 36.5 11.0 38.0 54-55 24.33605652854905 24.5 11.0 35.5 11.0 38.0 56-57 24.70926776306422 25.0 11.0 36.5 11.0 38.0 58-59 25.038623095543215 26.0 11.0 37.0 11.0 38.0 60-61 25.67432899045992 27.0 11.0 37.0 11.0 38.0 62-63 25.631852484693148 27.0 11.0 37.0 11.0 38.0 64-65 25.53002634201908 27.0 11.0 37.0 11.0 38.0 66-67 24.649829132849213 25.0 11.0 36.0 11.0 38.0 68-69 24.42930371636053 25.0 11.0 35.5 11.0 38.0 70-71 24.347616759219708 25.0 11.0 35.0 11.0 38.0 72-73 23.886951801224548 25.0 11.0 34.0 11.0 37.5 74-75 24.04664139256728 24.5 11.0 35.0 11.0 38.0 76 23.702157197778728 24.0 11.0 35.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 5 1.0 6 0.0 7 0.0 8 0.0 9 1.0 10 0.0 11 8.0 12 77.0 13 335.0 14 866.0 15 1541.0 16 2546.0 17 3945.0 18 5108.0 19 5276.0 20 4621.0 21 3421.0 22 2480.0 23 1685.0 24 1415.0 25 1181.0 26 1081.0 27 976.0 28 1044.0 29 1098.0 30 1315.0 31 1427.0 32 1782.0 33 2165.0 34 2667.0 35 3224.0 36 3323.0 37 1575.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.22511747116617 19.722696853196638 12.905809483126868 39.146376192510324 2 14.728392424889647 13.235084721628935 47.380037021216005 24.656485832265414 3 16.339171294318668 11.553111206037306 47.32486117043998 24.782856329204044 4 13.81354122170013 23.083084152071763 26.238786843229388 36.86458778299872 5 15.089705254164887 20.085789548625943 43.179552897622095 21.644952299587068 6 23.059945892068917 32.14438274241777 14.724832692581519 30.070838672931792 7 22.097038302719636 18.00512601452371 19.058806777730315 40.83902890502634 8 18.637641949378807 32.07788971556727 15.796874443772028 33.487593891281904 9 18.548315326700248 13.733691686097218 16.35370129754552 51.364291689657016 10-11 20.576692030436526 20.36666221688248 28.18226316023673 30.874382592444267 12-13 18.983500347080078 13.903671929231262 33.43627075805849 33.67655696563017 14-15 24.76416773458636 19.88288480706251 21.80869998576107 33.54424747259006 16-17 29.739952297889005 15.32786301662454 21.426791499056637 33.505393186429814 18-19 19.82200863258132 14.564143639033505 29.86250166866907 35.751346059716106 20-21 29.521648200062295 14.621100876607485 23.130868152894585 32.726382770435634 22-23 31.567049944822184 13.320992488697447 21.428571428571427 33.68338613790894 24-25 20.8344086787046 21.454697553552197 19.466569366451004 38.2443244012922 26-27 28.357717499644025 20.942795101808347 21.76687313114054 28.932614267407093 28-29 22.696569216393005 20.733324433764963 23.276821074177903 33.29328527566413 30-31 21.792179128918 19.49344107648221 25.05562180730826 33.65875798729153 32-33 22.99094032002563 18.334727586636525 25.39736219141021 33.27696990192763 34-35 22.303009807237064 19.802253350657672 24.90433049142979 32.99040635067547 36-37 28.70530231564708 13.86540412580318 30.54482672694587 26.884466831603866 38-39 28.09084760243494 11.806272471610125 36.368409810971485 23.73447011498345 40-41 24.190132070769998 22.185931437115087 23.450571357374248 30.173365134740664 42-43 17.363638790748173 22.863474151663745 27.73056146377495 32.04232559381313 44-45 17.929070440083656 15.579584390157079 32.22355715747786 34.2677880122814 46-47 27.354359859744047 14.880835840022783 26.708256946051296 31.05654735418187 48-49 26.468860687396546 15.477101614367337 30.418453980741507 27.635583717494615 50-51 37.8285053174921 13.528233880656787 24.969518978329553 23.67374182352156 52-53 17.161343146765397 18.794443010599572 30.285770226854037 33.758443615781 54-55 25.65679399095796 16.005126197002596 25.840126730981456 32.49795308105799 56-57 26.023886228930458 16.998914262321343 24.098036772689248 32.879162736058944 58-59 17.83651492902594 20.33818359809549 28.66372980910426 33.16157166377431 60-61 17.73223216987345 17.64946692059876 28.686613388391507 35.93168752113628 62-63 17.87211320250968 20.349753036977706 27.96066390780047 33.817469852712144 64-65 18.22364615316157 21.604592177279404 26.856227472967557 33.315534196591464 66-67 15.895801998878634 31.625179107001415 18.461593229087867 34.017425665032086 68-69 16.66963395527703 30.191568152684802 18.886198547215496 34.25259934482268 70-71 15.542344523156885 33.419066604962445 17.49670713039764 33.54188174148304 72-73 14.627200398697116 35.48582311375327 16.6242457682929 33.262730719256716 74-75 17.66402050478801 25.47168132141967 20.949770389092592 35.91452778469972 76 19.65754156135417 22.86675447652273 23.3597949521199 34.1159090100032 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 0.0 16 2.0 17 4.0 18 5.0 19 7.5 20 11.0 21 13.0 22 15.5 23 26.0 24 48.5 25 63.0 26 73.5 27 95.5 28 136.5 29 166.0 30 188.5 31 264.0 32 367.0 33 417.0 34 481.0 35 647.0 36 821.0 37 893.0 38 1002.5 39 1212.5 40 1406.5 41 1605.5 42 1711.0 43 1855.0 44 2069.0 45 2214.0 46 2289.0 47 2326.5 48 2398.5 49 2354.0 50 2275.0 51 2250.5 52 2193.0 53 2123.0 54 2086.0 55 2031.0 56 2028.5 57 2033.0 58 1985.0 59 1926.5 60 1849.0 61 1814.5 62 1799.0 63 1792.0 64 1733.0 65 1644.5 66 1564.5 67 1521.0 68 1447.5 69 1332.5 70 1235.5 71 1180.0 72 1126.0 73 1029.5 74 854.0 75 721.0 76 652.5 77 537.5 78 427.5 79 364.0 80 320.0 81 230.5 82 147.0 83 109.0 84 91.5 85 61.5 86 37.0 87 25.0 88 18.5 89 8.5 90 4.0 91 3.0 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.003559732308130429 9 0.0017798661540652145 10-11 0.0026697992310978215 12-13 0.0017798661540652145 14-15 0.0 16-17 0.003559732308130429 18-19 0.0026697992310978215 20-21 0.0026697992310978215 22-23 0.003559732308130429 24-25 8.899330770326073E-4 26-27 0.0 28-29 0.0026697992310978215 30-31 0.0017798661540652145 32-33 0.0017798661540652145 34-35 0.0017798661540652145 36-37 0.0017798661540652145 38-39 0.003559732308130429 40-41 0.003559732308130429 42-43 8.899330770326073E-4 44-45 0.0026697992310978215 46-47 0.0017798661540652145 48-49 0.0017798661540652145 50-51 0.0026697992310978215 52-53 0.004449665385163036 54-55 0.003559732308130429 56-57 0.0017798661540652145 58-59 0.0026697992310978215 60-61 0.0017798661540652145 62-63 0.0026697992310978215 64-65 0.0026697992310978215 66-67 0.004449665385163036 68-69 0.028477858465043433 70-71 0.003559732308130429 72-73 0.0017798661540652145 74-75 0.003559732308130429 76 0.003559732308130429 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 56184.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.11184678912146 #Duplication Level Percentage of deduplicated Percentage of total 1 99.19367872856245 98.31268688594618 2 0.7308970099667774 1.4488110494090845 3 0.06464936697494837 0.19222554463904315 4 0.007183262997216486 0.028477858465043433 5 0.003591631498608243 0.017798661540652145 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0017798661540652143 0.0 6 0.0 0.0 0.0 0.0017798661540652143 0.0 7 0.0 0.0 0.0 0.005339598462195643 0.0 8 0.0 0.0 0.0 0.007119464616260857 0.0 9 0.0 0.0 0.0 0.0124590630784565 0.0 10 0.0 0.0 0.0 0.01779866154065214 0.0 11 0.0 0.0 0.0 0.021358393848782572 0.0 12 0.0 0.0 0.0 0.021358393848782572 0.0 13 0.0 0.0 0.0 0.023138260002847785 0.0 14 0.0 0.0 0.0 0.024918126156913 0.0 15 0.0 0.0 0.0 0.024918126156913 0.0 16 0.0 0.0 0.0 0.024918126156913 0.0 17 0.0 0.0 0.0 0.024918126156913 0.0 18 0.0 0.0 0.0 0.024918126156913 0.0 19 0.0 0.0 0.0 0.024918126156913 0.0 20 0.0 0.0 0.0 0.03915705538943472 0.0 21 0.0 0.0 0.0 0.042716787697565144 0.0 22 0.0 0.0 0.0 0.05695571693008686 0.0 23 0.0 0.0 0.0 0.060515449238217285 0.0 24 0.0 0.0 0.0 0.06585504770041294 0.0 25 0.0 0.0 0.0 0.06941478000854336 0.0 26 0.0 0.0 0.0 0.07297451231667379 0.0 27 0.0 0.0 0.0 0.10323223693578243 0.0 28 0.0 0.0 0.0 0.15306848924960842 0.0 29 0.0 0.0 0.0 0.19222554463904315 0.0 30 0.0 0.0 0.0 0.24206179695286914 0.0 31 0.0 0.0 0.0 0.2705396554179126 0.0 32 0.0 0.0 0.0 0.323935640039869 0.0 33 0.0 0.0 0.0 0.37911149081589063 0.0 34 0.0 0.0 0.0 0.46632493236508615 0.0 35 0.0 0.0 0.0 0.6015947600740424 0.0 36 0.0 0.0 0.0 0.7208457923964118 0.0 37 0.0 0.0 0.0 1.0358821016659547 0.0 38 0.0 0.0 0.0 1.377616403246476 0.0 39 0.0 0.0 0.0 1.6890929802078885 0.0 40 0.0 0.0 0.0 2.000569557169301 0.0 41 0.0 0.0 0.0 2.278228677203474 0.0 42 0.0 0.0 0.0 2.5808059233945606 0.0 43 0.0 0.0 0.0 2.8994019649722342 0.0 44 0.0 0.0 0.0 3.2518154634771466 0.0 45 0.0 0.0 0.0 3.5081161896625375 0.0 46 0.0 0.0 0.0 3.814253168161754 0.0 47 0.0 0.0 0.0 4.120390146660971 0.0 48 0.0 0.0 0.0 4.305496226683753 0.0 49 0.0 0.0 0.0 4.455004983625232 0.0 50 0.0 0.0 0.0 4.721984906735013 0.0 51 0.0 0.0 0.0 5.047700412928948 0.0 52 0.0 0.0 0.0 5.305781005268404 0.0 53 0.0 0.0 0.0 5.606578385305425 0.0 54 0.0 0.0 0.0 5.921614694574968 0.0 55 0.0 0.0 0.0 6.136978499216859 0.0 56 0.0 0.0 0.0 6.350562437704685 0.0 57 0.0 0.0 0.0 6.508970525416489 0.0 58 0.0 0.0 0.0 6.708315534671793 0.0 59 0.0 0.0 0.0 6.893421614694575 0.0 60 0.0 0.0 0.0 7.048269970098248 0.0 61 0.0 0.0 0.0 7.213797522426313 0.0 62 0.0 0.0 0.0 7.30813042859177 0.0 63 0.0 0.0 0.0 7.423821728606009 0.0 64 0.0 0.0 0.0 7.525274099387726 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAGTGTA 35 3.6288839E-9 70.00001 34 CTATGTA 15 0.0022138702 70.0 26 GTACCGA 15 0.0022138702 70.0 38 CTCCGTA 15 0.0022138702 70.0 53 TAAACTA 15 0.0022138702 70.0 39 CACGAAA 15 0.0022138702 70.0 23 TATGATG 15 0.0022138702 70.0 11 AGAAACA 15 0.0022138702 70.0 67 ATCTTGG 15 0.0022138702 70.0 42 GGAGTTT 15 0.0022138702 70.0 33 TAGATAT 15 0.0022138702 70.0 39 CGACTTG 15 0.0022138702 70.0 25 CGACTAT 25 2.8059349E-6 70.0 22 CGACTAG 20 7.863229E-5 70.0 22 CGTTTAT 20 7.863229E-5 70.0 35 ACCTTGG 15 0.0022138702 70.0 42 CCGCAAT 15 0.0022138702 70.0 24 GACTAGG 15 0.0022138702 70.0 23 GCCGTAT 95 0.0 62.631584 54 GTATATC 35 2.9249168E-7 60.000004 38 >>END_MODULE