##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779776_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 71565 Sequences flagged as poor quality 0 Sequence length 76 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.577642702438343 32.0 21.0 34.0 12.0 34.0 2 25.9625654998952 31.0 21.0 34.0 12.0 34.0 3 25.143338223992174 27.0 21.0 34.0 11.0 34.0 4 26.3585411863341 32.0 21.0 34.0 12.0 34.0 5 26.124013134912317 32.0 21.0 34.0 11.0 34.0 6 27.93679871445539 34.0 21.0 37.0 11.0 38.0 7 28.870048207922867 34.0 21.0 38.0 12.0 38.0 8 28.123174736253755 34.0 21.0 38.0 11.0 38.0 9 29.805030391951373 34.0 23.0 38.0 12.0 38.0 10-11 29.051554530846083 34.0 21.0 38.0 11.0 38.0 12-13 28.732508907985746 33.5 22.0 37.5 11.0 38.0 14-15 28.153238314818697 33.5 21.0 37.5 11.0 38.0 16-17 28.075309159505345 32.5 16.0 37.5 11.0 38.0 18-19 28.5402920421994 34.0 21.0 37.5 11.0 38.0 20-21 27.551470690980228 32.5 16.0 37.0 11.0 38.0 22-23 27.634800530985817 31.0 16.0 37.5 11.0 38.0 24-25 28.31145811500035 33.5 21.0 37.5 11.0 38.0 26-27 27.151233144693634 32.0 16.0 37.0 11.0 38.0 28-29 28.614441416893733 34.0 21.0 38.0 11.0 38.0 30-31 29.10412911339342 34.5 21.0 38.0 11.0 38.0 32-33 29.266121707538602 35.0 21.0 38.0 11.0 38.0 34-35 29.30846083979599 35.5 21.0 38.0 11.0 38.0 36-37 27.74983581359603 32.5 16.0 37.5 11.0 38.0 38-39 26.69717739118284 29.0 16.0 37.0 11.0 38.0 40-41 27.12020540767135 31.0 16.0 37.0 11.0 38.0 42-43 27.935925382519386 32.5 21.0 37.5 11.0 38.0 44-45 29.355089778523023 35.0 21.5 38.0 11.0 38.0 46-47 28.294787955005937 33.5 16.0 37.5 11.0 38.0 48-49 27.528701180744775 32.5 16.0 37.0 11.0 38.0 50-51 25.954460979529102 27.0 11.0 37.0 11.0 38.0 52-53 28.310088730524697 34.0 21.0 37.5 11.0 38.0 54-55 27.63828687207434 32.5 16.0 37.5 11.0 38.0 56-57 28.035024103961433 32.5 16.0 38.0 11.0 38.0 58-59 28.8593586250262 34.5 21.0 38.0 11.0 38.0 60-61 29.424551107384893 36.0 21.0 38.0 11.0 38.0 62-63 29.33354293299797 35.5 21.0 38.0 11.0 38.0 64-65 29.115706001537063 35.0 21.0 38.0 11.0 38.0 66-67 27.619981834695732 33.0 21.0 37.5 11.0 38.0 68-69 27.54542723398309 32.5 20.5 37.0 11.0 38.0 70-71 27.251631384056452 31.5 20.0 37.0 11.0 38.0 72-73 26.36859498358136 28.0 14.5 37.0 11.0 38.0 74-75 27.486138475511773 32.5 19.5 37.0 11.0 38.0 76 27.504422552923916 33.0 19.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 1.0 4 1.0 5 2.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 8.0 12 39.0 13 235.0 14 616.0 15 1186.0 16 2014.0 17 3086.0 18 4007.0 19 4373.0 20 3739.0 21 3050.0 22 2259.0 23 1722.0 24 1595.0 25 1357.0 26 1452.0 27 1536.0 28 1735.0 29 1953.0 30 2350.0 31 2810.0 32 3523.0 33 4307.0 34 5338.0 35 6781.0 36 6978.0 37 3512.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.959337665059735 16.44239502550129 12.271361699154614 37.326905610284356 2 18.18766156640816 13.598826241878012 44.28561447635017 23.927897715363656 3 18.313421365192482 14.69852581569203 40.64416963599525 26.34388318312024 4 15.110738489485085 19.450848878641793 26.19157409348145 39.24683853839167 5 15.759100118773143 23.05456577936142 39.18815063229232 21.998183469573114 6 27.5791238734018 32.26996436805701 13.952351009571718 26.19856074896947 7 25.71089219590582 20.42199399147628 18.57053028715154 35.29658352546636 8 21.563120091668765 30.966155222045224 17.57916212515022 29.8915625611358 9 20.57097342164836 14.032587127246304 17.2815181241441 48.11492132696124 10-11 24.658328675237563 20.495388485187256 26.16405813303522 28.682224706539966 12-13 22.952446164810443 15.19542767708668 30.19102583809617 31.661100320006707 14-15 25.687695199234224 19.186294306295984 21.549296758732 33.57671373573779 16-17 28.69799745664417 17.23892172892299 22.706438044131417 31.35664277030143 18-19 23.123790359206545 16.56290830835447 27.05472991384912 33.25857141858987 20-21 28.331074188454604 16.728385573147385 23.814647643269378 31.12589259512863 22-23 29.917551704863055 15.769284516489659 22.802543320290667 31.510620458356627 24-25 23.844358737877645 21.090103686313967 19.739526564377744 35.326011011430644 26-27 27.412784807473294 20.538976963870237 22.916652110422504 29.131586118233965 28-29 24.98917007867414 21.206383365240843 22.15382680510334 31.65061975098168 30-31 24.65955380412378 19.876887388992532 23.673674722787013 31.789884084096677 32-33 25.04855996981596 19.507832478584707 23.928536493341348 31.515071058257988 34-35 24.662176325093277 20.2023448526432 23.519095596763602 31.616383225499924 36-37 28.199216047959418 15.746815631528566 28.74071589773688 27.313252422775136 38-39 27.508384572386806 14.461989938513137 33.52920626048071 24.500419228619343 40-41 25.839674121896856 20.94311806094144 22.75557046135787 30.461637355803827 42-43 21.297616053212597 21.667924317375142 25.408736480254884 31.625723149157377 44-45 20.967572892866876 17.276989400577133 29.155050621502088 32.6003870850539 46-47 26.602991832200274 16.93787860791068 26.844043235538663 29.615086324350383 48-49 26.400737837214667 17.214804256538173 28.278868929087974 28.105588977159186 50-51 32.26989749931876 15.695809839226948 27.081979583708886 24.952313077745405 52-53 20.4552759184472 19.84251198278392 27.918139768868517 31.784072329900365 54-55 25.3294392196867 18.080378977375943 25.534159667975576 31.05602213496178 56-57 25.384980855761434 18.70825298342696 24.65274866549286 31.25401749531874 58-59 21.26327557294578 20.53311906092789 26.788010061486865 31.415595304639467 60-61 20.793739519284514 19.040665176076022 26.37227501397429 33.79332029066517 62-63 21.06329609211786 20.658743301122826 26.00806310744056 32.26989749931876 64-65 20.918517069353417 21.76464834197398 25.18480736714132 32.13202722153128 66-67 19.3921185019564 27.345584125209616 19.478759083286754 33.78353828954723 68-69 19.842617634931617 26.97374398110293 19.588234060842403 33.59540432312305 70-71 19.247484628283956 28.783538289547234 18.499161542761318 33.46981553940749 72-73 18.364053045653357 29.561492991992843 17.93784323863557 34.13661072371823 74-75 20.836768630958204 24.54339654280963 21.153281815514035 33.46655301071813 76 22.67715655175305 22.98179175808052 22.397674711085646 31.943376979080785 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 1.0 6 0.5 7 0.5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.0 16 2.0 17 3.0 18 4.5 19 5.5 20 9.0 21 13.0 22 16.5 23 26.5 24 52.5 25 72.0 26 95.5 27 138.0 28 199.0 29 241.0 30 287.0 31 398.0 32 534.5 33 606.0 34 716.0 35 926.5 36 1150.5 37 1274.0 38 1426.5 39 1675.0 40 1908.0 41 2178.5 42 2312.0 43 2382.0 44 2589.5 45 2722.0 46 2717.0 47 2730.0 48 2675.0 49 2550.0 50 2493.0 51 2432.0 52 2374.5 53 2283.0 54 2188.0 55 2167.5 56 2128.5 57 2153.0 58 2196.0 59 2203.0 60 2208.0 61 2271.0 62 2336.0 63 2335.0 64 2282.5 65 2243.0 66 2190.0 67 2125.0 68 2111.0 69 2036.0 70 1891.0 71 1807.0 72 1754.5 73 1649.5 74 1417.0 75 1237.0 76 1132.0 77 928.5 78 700.0 79 570.0 80 480.0 81 320.5 82 206.0 83 161.0 84 123.0 85 68.0 86 39.0 87 27.0 88 19.5 89 8.5 90 3.0 91 0.5 92 0.0 93 1.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.004191993292810731 9 0.004191993292810731 10-11 0.006986655488017886 12-13 0.005589324390414308 14-15 0.00489065884161252 16-17 0.008383986585621462 18-19 0.006287989939216097 20-21 0.005589324390414308 22-23 0.006986655488017886 24-25 0.004191993292810731 26-27 0.00489065884161252 28-29 0.005589324390414308 30-31 0.006287989939216097 32-33 0.005589324390414308 34-35 0.005589324390414308 36-37 0.006287989939216097 38-39 0.006986655488017886 40-41 0.006287989939216097 42-43 0.004191993292810731 44-45 0.006287989939216097 46-47 0.00489065884161252 48-49 0.006287989939216097 50-51 0.006287989939216097 52-53 0.005589324390414308 54-55 0.005589324390414308 56-57 0.004191993292810731 58-59 0.006986655488017886 60-61 0.006986655488017886 62-63 0.006287989939216097 64-65 0.005589324390414308 66-67 0.006986655488017886 68-69 0.027247956403269755 70-71 0.006986655488017886 72-73 0.005589324390414308 74-75 0.005589324390414308 76 0.005589324390414308 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 71565.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 98.5146370432474 #Duplication Level Percentage of deduplicated Percentage of total 1 98.67805168647698 97.21232446028087 2 1.1602507730277154 2.286033675679452 3 0.14042154832487022 0.41500733598826245 4 0.018439193214376898 0.07266121707538602 5 0.0028367989560579843 0.013973310976035772 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0013973310976035773 0.0 4 0.0 0.0 0.0 0.0013973310976035773 0.0 5 0.0 0.0 0.0 0.004191993292810731 0.0 6 0.0 0.0 0.0 0.004191993292810731 0.0 7 0.0 0.0 0.0 0.004191993292810731 0.0 8 0.0 0.0 0.0 0.005589324390414309 0.0 9 0.0 0.0 0.0 0.008383986585621462 0.0 10 0.0 0.0 0.0 0.00978131768322504 0.0 11 0.0 0.0 0.0 0.00978131768322504 0.0 12 0.0 0.0 0.0 0.00978131768322504 0.0 13 0.0 0.0 0.0 0.00978131768322504 0.0 14 0.0 0.0 0.0 0.012575979878432194 0.0 15 0.0 0.0 0.0 0.012575979878432194 0.0 16 0.0 0.0 0.0 0.012575979878432194 0.0 17 0.0 0.0 0.0 0.013973310976035772 0.0 18 0.0 0.0 0.0 0.016767973171242925 0.0 19 0.0 0.0 0.0 0.022357297561657236 0.0 20 0.0 0.0 0.0 0.023754628659260812 0.0 21 0.0 0.0 0.0 0.032138615244882277 0.0 22 0.0 0.0 0.0 0.03772793963529658 0.0 23 0.0 0.0 0.0 0.04331726402571089 0.0 24 0.0 0.0 0.0 0.05729057500174666 0.0 25 0.0 0.0 0.0 0.06008523719695382 0.0 26 0.0 0.0 0.0 0.06986655488017886 0.0 27 0.0 0.0 0.0 0.11737581219870048 0.0 28 0.0 0.0 0.0 0.1774610493956543 0.0 29 0.0 0.0 0.0 0.19981834695731154 0.0 30 0.0 0.0 0.0 0.2515195975686439 0.0 31 0.0 0.0 0.0 0.27806888842311184 0.0 32 0.0 0.0 0.0 0.31998882135121914 0.0 33 0.0 0.0 0.0 0.36749807866974077 0.0 34 0.0 0.0 0.0 0.46810591769719834 0.0 35 0.0 0.0 0.0 0.6469642981904562 0.0 36 0.0 0.0 0.0 0.7559561238035353 0.0 37 0.0 0.0 0.0 1.166771466498987 0.0 38 0.0 0.0 0.0 1.496541605533431 0.0 39 0.0 0.0 0.0 1.8626423531055685 0.0 40 0.0 0.0 0.0 2.2594843848249844 0.0 41 0.0 0.0 0.0 2.680081045203661 0.0 42 0.0 0.0 0.0 3.069936421435059 0.0 43 0.0 0.0 0.0 3.4681757842520784 0.0 44 0.0 0.0 0.0 3.929295046461259 0.0 45 0.0 0.0 0.0 4.243694543422063 0.0 46 0.0 0.0 0.0 4.588835324530147 0.0 47 0.0 0.0 0.0 5.0317892824704815 0.0013973310976035773 48 0.0 0.0 0.0 5.283308880039125 0.0013973310976035773 49 0.0 0.0 0.0 5.541815133095787 0.0013973310976035773 50 0.0 0.0 0.0 5.88695591420387 0.0013973310976035773 51 0.0 0.0 0.0 6.3396911898274295 0.0013973310976035773 52 0.0 0.0 0.0 6.672255991057081 0.0013973310976035773 53 0.0 0.0 0.0 7.070495353874101 0.0013973310976035773 54 0.0 0.0 0.0 7.442185425836652 0.0013973310976035773 55 0.0 0.0 0.0 7.709075665478935 0.0013973310976035773 56 0.0 0.0 0.0 8.059805770977434 0.0013973310976035773 57 0.0 0.0 0.0 8.277789422203591 0.0013973310976035773 58 0.0 0.0 0.0 8.511143715503389 0.0013973310976035773 59 0.0 0.0 0.0 8.757073988681618 0.0013973310976035773 60 0.0 0.0 0.0 8.907985747222805 0.0013973310976035773 61 0.0 0.0 0.0 9.049116188080765 0.0013973310976035773 62 0.0 0.0 0.0 9.181862642353106 0.0013973310976035773 63 0.0 0.0 0.0 9.352337036260742 0.0013973310976035773 64 0.0 0.0 0.0 9.525606092363585 0.0013973310976035773 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTCACT 15 0.0022169782 69.99511 69 CCTAGTG 15 0.0022169782 69.99511 32 AAGCGTA 15 0.0022169782 69.99511 34 CTAGGGG 15 0.0022169782 69.99511 44 ATGTATA 30 8.303827E-6 58.329254 28 AGTATGC 30 8.303827E-6 58.329254 28 AGTGTCG 30 8.303827E-6 58.329254 35 ATCTCGG 100 0.0 55.99609 42 GTGGCAG 25 2.3766825E-4 55.99609 48 GAAAATT 25 2.3766825E-4 55.99609 26 TCGTTGT 45 2.6573616E-8 54.440643 45 CCGTATC 65 3.6379788E-12 53.84239 55 AGCGTGT 20 0.0069274693 52.496334 33 GTACCAT 20 0.0069274693 52.496334 57 AATTTGC 20 0.0069274693 52.496334 29 GCAGTGT 40 7.388826E-7 52.496334 33 CATCTAG 20 0.0069274693 52.496334 41 TAACGCT 20 0.0069274693 52.496334 70 GTGGATC 20 0.0069274693 52.496334 38 TTCCCGA 20 0.0069274693 52.496334 2 >>END_MODULE