##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779775_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 49016 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.42569773135303 23.0 12.0 32.0 12.0 34.0 2 23.23102660355802 23.0 12.0 32.0 12.0 34.0 3 23.083584951852455 23.0 11.0 32.0 11.0 34.0 4 22.308123877917414 23.0 12.0 32.0 11.0 34.0 5 22.973580055492086 23.0 11.0 32.0 11.0 34.0 6 23.50632446548066 26.0 11.0 34.0 11.0 38.0 7 24.355700179533212 26.0 12.0 34.0 12.0 38.0 8 23.781153092867633 26.0 11.0 34.0 11.0 38.0 9 25.24492002611392 27.0 12.0 36.0 12.0 38.0 10-11 24.144677248245472 26.0 11.0 35.0 11.0 38.0 12-13 24.760700587563242 26.5 11.0 35.0 11.0 38.0 14-15 23.399900032642403 25.5 11.0 34.0 11.0 38.0 16-17 23.57256814101518 24.5 11.0 34.5 11.0 38.0 18-19 24.020554512812144 26.0 11.5 34.0 11.0 38.0 20-21 23.247133589032153 23.5 11.0 34.0 11.0 37.5 22-23 23.491880202382895 24.5 11.0 33.0 11.0 37.5 24-25 23.302360453729392 23.0 11.0 34.0 11.0 37.5 26-27 22.53327484902889 23.0 11.0 33.0 10.0 37.5 28-29 23.0505447200914 23.0 11.0 34.0 11.0 38.0 30-31 23.50500856863065 24.0 11.0 34.5 11.0 38.0 32-33 23.69316141668027 25.0 11.0 35.0 11.0 38.0 34-35 23.65131793700016 24.5 11.0 35.0 11.0 38.0 36-37 23.430084054186388 24.0 11.0 34.0 11.0 38.0 38-39 23.58716541537457 24.5 11.0 34.0 11.0 37.0 40-41 22.601976905500244 23.0 11.0 34.0 11.0 37.0 42-43 23.004998367879878 23.5 11.0 34.0 11.0 37.5 44-45 23.771911212665252 26.0 11.0 34.5 11.0 38.0 46-47 23.471315488819975 24.5 11.0 35.0 11.0 38.0 48-49 22.74625632446548 23.0 11.0 34.0 11.0 37.5 50-51 22.231628447853762 23.0 11.0 31.5 11.0 37.0 52-53 22.626152684837606 23.0 11.0 34.0 11.0 37.5 54-55 22.627825607964745 23.0 11.0 33.5 11.0 37.5 56-57 22.901899379794354 23.0 11.0 34.0 11.0 38.0 58-59 22.95726905500245 23.0 11.0 34.0 11.0 38.0 60-61 23.588420107719926 24.0 11.0 35.5 11.0 38.0 62-63 23.57764811490126 24.0 11.0 35.5 11.0 38.0 64-65 23.61697200913987 24.5 11.0 35.0 11.0 38.0 66-67 23.173637179696428 24.0 11.0 34.0 11.0 38.0 68-69 22.830963358903215 23.5 11.0 34.0 11.0 37.5 70-71 22.831177574669496 23.5 11.0 34.0 11.0 37.5 72-73 22.620878896686797 23.5 11.0 33.0 11.0 37.0 74-75 22.278959931450956 22.5 11.0 33.5 11.0 37.5 76 21.766076383221804 21.0 11.0 33.0 11.0 37.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 3 3.0 4 0.0 5 1.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 8.0 12 80.0 13 375.0 14 881.0 15 1596.0 16 2671.0 17 4128.0 18 5490.0 19 5719.0 20 4945.0 21 3578.0 22 2463.0 23 1613.0 24 1198.0 25 928.0 26 744.0 27 670.0 28 683.0 29 678.0 30 804.0 31 875.0 32 1024.0 33 1278.0 34 1609.0 35 2018.0 36 1984.0 37 972.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.747347804798434 15.40517382079321 14.691121266525217 46.15635710788314 2 12.169495674881672 11.877754202709319 53.48457646482782 22.468173657581197 3 14.31777378815081 10.898482128284643 52.37269463032479 22.41104945323976 4 12.58772645666721 24.04724987759099 27.435939285131383 35.92908438061041 5 12.018524563407867 18.416435449649093 49.259425493716336 20.305614493226702 6 18.636771666394647 36.626815733638 16.525216255916437 28.211196344050922 7 17.963522115227683 20.701403623306675 18.865268483760406 42.46980577770524 8 14.800457030931199 34.14673957398188 16.76528197176202 34.287521423324904 9 15.457438994531952 15.310536195217498 17.64669876764874 51.58532604260181 10-11 17.370235860605565 21.801803639924916 30.576185423977805 30.251775075491715 12-13 15.658889421654543 14.370390018465432 36.66357209169463 33.30714846818539 14-15 23.706975700324403 21.364739966947543 23.21220900577398 31.716075326954073 16-17 29.520923874232313 15.281263389851258 22.064434514700782 33.13337822121565 18-19 16.873418754590713 14.580102831959522 32.50122418999429 36.04525422345548 20-21 28.988819064718847 14.365869582959276 23.799273647270056 32.84603770505182 22-23 31.997265975679422 12.832571615114666 21.477393291438833 33.69276911776708 24-25 18.360809597649556 22.961723659511957 20.1756712641802 38.50179547865829 26-27 27.796706996103076 22.101279252443227 22.269601942341826 27.832411809111868 28-29 20.37970292989472 21.486574716395985 24.832694034114095 33.3010283195952 30-31 19.104894819530312 20.381138927995757 27.368345881536797 33.14562037093714 32-33 20.732677711580838 18.816820370521505 27.39533175548845 33.055170162409205 34-35 19.875947481713474 20.604347959152445 26.423390428776923 33.096314130357165 36-37 28.09034614325209 13.59374840598635 32.50971710720953 25.806188343552023 38-39 28.50584562649201 10.803697129215891 38.73212136051091 21.958335883781192 40-41 22.92978035318962 23.529651809306166 24.39069179053468 29.149876046969524 42-43 14.800306044376436 24.156082631981636 29.63631726600357 31.407294057638357 44-45 15.295389857482428 15.366801668996052 35.010150678922294 34.327657794599226 46-47 27.338202889088386 14.935117930302782 27.107647106830978 30.619032073777852 48-49 25.93983044795609 15.12400150984973 32.246513573345034 26.68965446884915 50-51 41.12114256567202 12.68859984697781 24.108135679673552 22.082121907676612 52-53 14.682268447201166 19.208757128429042 32.640298705405876 33.468675718963915 54-55 25.69015119054906 15.754626512415582 26.064556936197995 32.49066536083736 56-57 25.769693754718137 16.821047477199926 24.49656213657601 32.91269663150593 58-59 15.500443773400121 20.54109749752609 30.8703059486039 33.08815278046989 60-61 15.273966314028339 17.525478714179325 30.491823347581693 36.70873162421064 62-63 15.48443700839616 20.79962457024515 29.80993868660797 33.90599973475072 64-65 15.546192769117766 22.45572512853995 28.48894148371827 33.50914061862401 66-67 13.007549479698021 34.968373801265045 18.677820852887166 33.34625586614977 68-69 14.22201361182821 33.22959501239758 18.9116659694091 33.63672540636511 70-71 12.91342759788619 36.04803003407399 17.752137275305543 33.286405092734284 72-73 12.005223210642292 38.97718925977311 16.637762180690444 32.37982534889415 74-75 15.351342528360401 26.964824940830816 21.48147392475312 36.20235860605566 76 17.636497184363012 24.2144780869991 24.179792703827633 33.96923202481025 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 1.5 6 1.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 0.0 15 0.5 16 1.5 17 2.0 18 5.5 19 10.0 20 10.5 21 10.0 22 13.0 23 20.5 24 40.0 25 55.0 26 65.5 27 101.5 28 146.0 29 165.0 30 213.0 31 307.0 32 399.0 33 445.0 34 524.5 35 696.5 36 892.0 37 995.0 38 1071.5 39 1266.5 40 1555.5 41 1759.5 42 1793.0 43 1937.5 44 2123.5 45 2222.0 46 2279.0 47 2301.0 48 2352.0 49 2331.5 50 2282.0 51 2235.5 52 2129.0 53 1940.0 54 1811.0 55 1796.5 56 1717.5 57 1628.5 58 1604.0 59 1545.0 60 1467.0 61 1375.5 62 1303.0 63 1322.0 64 1256.5 65 1129.0 66 1055.5 67 1025.0 68 959.5 69 886.0 70 788.0 71 698.0 72 696.5 73 648.0 74 532.5 75 464.0 76 429.0 77 352.0 78 273.0 79 236.0 80 194.5 81 120.5 82 71.5 83 55.0 84 43.5 85 27.0 86 14.5 87 7.0 88 5.5 89 2.0 90 1.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.008160600620205648 9 0.008160600620205648 10-11 0.008160600620205648 12-13 0.011220825852782765 14-15 0.006120450465154235 16-17 0.01020075077525706 18-19 0.008160600620205648 20-21 0.008160600620205648 22-23 0.008160600620205648 24-25 0.008160600620205648 26-27 0.006120450465154235 28-29 0.008160600620205648 30-31 0.01020075077525706 32-33 0.008160600620205648 34-35 0.009180675697731353 36-37 0.009180675697731353 38-39 0.01020075077525706 40-41 0.011220825852782765 42-43 0.007140525542679941 44-45 0.009180675697731353 46-47 0.008160600620205648 48-49 0.009180675697731353 50-51 0.007140525542679941 52-53 0.009180675697731353 54-55 0.01020075077525706 56-57 0.006120450465154235 58-59 0.009180675697731353 60-61 0.009180675697731353 62-63 0.011220825852782765 64-65 0.008160600620205648 66-67 0.01224090093030847 68-69 0.029582177248245474 70-71 0.01020075077525706 72-73 0.008160600620205648 74-75 0.008160600620205648 76 0.008160600620205648 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 49016.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.46344050922148 #Duplication Level Percentage of deduplicated Percentage of total 1 99.52618300412283 98.9921658234046 2 0.42048694439316553 0.8364615635710788 3 0.04307427235247061 0.12852945976823896 4 0.008204623305232498 0.03264240248082259 5 0.0020511558263081246 0.01020075077525706 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.008160600620205648 0.0 6 0.0 0.0 0.0 0.008160600620205648 0.0 7 0.0 0.0 0.0 0.01020075077525706 0.0 8 0.0 0.0 0.0 0.01020075077525706 0.0 9 0.0 0.0 0.0 0.01020075077525706 0.0 10 0.0 0.0 0.0 0.01020075077525706 0.0 11 0.0 0.0 0.0 0.01020075077525706 0.0 12 0.0 0.0 0.0 0.01020075077525706 0.0 13 0.0 0.0 0.0 0.01224090093030847 0.0 14 0.0 0.0 0.0 0.02040150155051412 0.0 15 0.0 0.0 0.0 0.02040150155051412 0.0 16 0.0 0.0 0.0 0.02040150155051412 0.0 17 0.0 0.0 0.0 0.02040150155051412 0.0 18 0.0 0.0 0.0 0.02040150155051412 0.0 19 0.0 0.0 0.0 0.03672270279092541 0.0 20 0.0 0.0 0.0 0.04080300310102824 0.0 21 0.0 0.0 0.0 0.04488330341113106 0.0 22 0.0 0.0 0.0 0.07140525542679942 0.0 23 0.0 0.0 0.0 0.07752570589195365 0.0 24 0.0 0.0 0.0 0.10404765790762201 0.0 25 0.0 0.0 0.0 0.10404765790762201 0.0 26 0.0 0.0 0.0 0.10608780806267341 0.0 27 0.0 0.0 0.0 0.14077036069854743 0.0 28 0.0 0.0 0.0 0.17137261302431858 0.0 29 0.0 0.0 0.0 0.19585441488493552 0.0 30 0.0 0.0 0.0 0.23257711767586095 0.0 31 0.0 0.0 0.0 0.2631793700016321 0.0 32 0.0 0.0 0.0 0.3243838746531745 0.0 33 0.0 0.0 0.0 0.38558837930471684 0.0 34 0.0 0.0 0.0 0.44067243349110496 0.0 35 0.0 0.0 0.0 0.5671617431042925 0.0 36 0.0 0.0 0.0 0.6650889505467602 0.0 37 0.0 0.0 0.0 1.0241553778358088 0.0 38 0.0 0.0 0.0 1.2669332462869267 0.0 39 0.0 0.0 0.0 1.5423535172188674 0.0 40 0.0 0.0 0.0 1.8320548392361677 0.0 41 0.0 0.0 0.0 2.111555410478211 0.0 42 0.0 0.0 0.0 2.382895381100049 0.0 43 0.0 0.0 0.0 2.6379141504814756 0.0 44 0.0 0.0 0.0 2.93373592296393 0.0 45 0.0 0.0 0.0 3.082666884282683 0.0 46 0.0 0.0 0.0 3.298922800718133 0.0 47 0.0 0.0 0.0 3.5559817202546107 0.0 48 0.0 0.0 0.0 3.6783907295576954 0.0 49 0.0 0.0 0.0 3.835482291496654 0.0 50 0.0 0.0 0.0 4.059898808552309 0.0 51 0.0 0.0 0.0 4.296556226538273 0.0 52 0.0 0.0 0.0 4.514852293128774 0.0 53 0.0 0.0 0.0 4.833115717316795 0.0 54 0.0 0.0 0.0 5.041211033132038 0.0 55 0.0 0.0 0.0 5.226864697241717 0.0 56 0.0 0.0 0.0 5.373755508405418 0.0 57 0.0 0.0 0.0 5.532887220499429 0.0 58 0.0 0.0 0.0 5.663456830422719 0.0 59 0.0 0.0 0.0 5.845030194222295 0.0 60 0.0 0.0 0.0 5.926636200424351 0.0 61 0.0 0.0 0.0 6.02660355802187 0.0 62 0.0 0.0 0.0 6.098008813448669 0.0 63 0.0 0.0 0.0 6.224498123061857 0.0 64 0.0 0.0 0.0 6.306104129263914 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTG 25 2.8005834E-6 70.00001 45 GTGTACC 25 2.8005834E-6 70.00001 36 CGTGTAA 25 2.8005834E-6 70.00001 35 TGTAGAC 25 2.8005834E-6 70.00001 37 TGTACCT 25 2.8005834E-6 70.00001 37 CGTTTAG 25 2.8005834E-6 70.00001 35 TTGTGTC 15 0.00221218 70.0 34 GTTTAGA 35 3.616151E-9 70.0 36 TGAGTGT 15 0.00221218 70.0 33 GCGTTTA 15 0.00221218 70.0 34 CATTCAA 15 0.00221218 70.0 61 GTGGATC 15 0.00221218 70.0 54 GCCGATA 15 0.00221218 70.0 20 TAACCTT 15 0.00221218 70.0 58 TCGTGTA 55 0.0 70.0 34 ACGTGTA 20 7.85323E-5 70.0 34 AATTATT 30 1.0039548E-7 70.0 57 CGTGTAT 20 7.85323E-5 70.0 35 TGAGGCT 15 0.00221218 70.0 13 CACGTGT 15 0.00221218 70.0 33 >>END_MODULE