##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779775_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 49016 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.67394320221968 34.0 34.0 34.0 34.0 34.0 2 33.6864289211686 34.0 34.0 34.0 34.0 34.0 3 33.66984250040803 34.0 34.0 34.0 34.0 34.0 4 33.70295413742451 34.0 34.0 34.0 34.0 34.0 5 33.74357352701159 34.0 34.0 34.0 34.0 34.0 6 37.46072710951526 38.0 38.0 38.0 37.0 38.0 7 37.44440590827485 38.0 38.0 38.0 37.0 38.0 8 37.33174881671291 38.0 38.0 38.0 37.0 38.0 9 37.37628529459768 38.0 38.0 38.0 37.0 38.0 10-11 37.24816386486045 38.0 38.0 38.0 36.0 38.0 12-13 37.275644687449 38.0 38.0 38.0 36.0 38.0 14-15 37.27316590501061 38.0 38.0 38.0 36.0 38.0 16-17 37.057430226864696 38.0 38.0 38.0 35.5 38.0 18-19 37.00847682389424 38.0 38.0 38.0 35.0 38.0 20-21 37.14703362167455 38.0 38.0 38.0 36.0 38.0 22-23 37.158305451281215 38.0 38.0 38.0 36.0 38.0 24-25 36.95912559164354 38.0 38.0 38.0 34.5 38.0 26-27 36.75447812959034 38.0 37.5 38.0 34.5 38.0 28-29 36.807011996082906 38.0 37.5 38.0 34.5 38.0 30-31 36.83553329525053 38.0 37.0 38.0 35.0 38.0 32-33 36.56262240900931 38.0 37.0 38.0 34.0 38.0 34-35 36.39248408682879 38.0 37.0 38.0 34.0 38.0 36-37 36.336992002611396 38.0 37.0 38.0 34.0 38.0 38-39 33.48098580055492 37.0 34.0 38.0 23.0 38.0 40-41 35.862687693814266 37.5 36.5 38.0 32.5 38.0 42-43 36.80638975028562 38.0 37.0 38.0 34.5 38.0 44-45 36.869634405092214 38.0 37.5 38.0 34.5 38.0 46-47 36.85592459605027 38.0 37.0 38.0 35.0 38.0 48-49 36.79586257548556 38.0 37.0 38.0 34.5 38.0 50-51 36.570578994614 38.0 37.0 38.0 34.0 38.0 52-53 36.582626081279585 38.0 37.0 38.0 34.0 38.0 54-55 36.59228619226376 38.0 37.0 38.0 34.0 38.0 56-57 36.57488371144116 38.0 37.0 38.0 34.0 38.0 58-59 36.36117798269953 38.0 37.0 38.0 34.0 38.0 60-61 36.34122531418312 38.0 37.0 38.0 34.0 38.0 62-63 36.478568222621185 38.0 37.0 38.0 34.0 38.0 64-65 36.57380243185898 38.0 37.0 38.0 34.0 38.0 66-67 36.33407458788967 38.0 37.0 38.0 34.0 38.0 68-69 35.74455279908601 38.0 36.5 38.0 31.0 38.0 70-71 31.16877142157663 34.5 28.5 38.0 17.5 38.0 72-73 23.5604394483434 23.0 11.0 36.0 10.0 38.0 74-75 22.689040313367062 23.0 11.0 35.5 10.5 38.0 76 22.685939285131386 23.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 1.0 22 7.0 23 18.0 24 29.0 25 41.0 26 83.0 27 176.0 28 310.0 29 484.0 30 796.0 31 1241.0 32 1929.0 33 2940.0 34 5433.0 35 14753.0 36 12210.0 37 8564.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 13.289538110004898 5.685898482128285 12.799902072792557 68.22466133507426 2 7.244573200587563 4.800473314835972 69.69152929655623 18.263424188020238 3 7.293536804308798 8.10551656601926 70.88705728741635 13.71388934225559 4 6.550922147870083 57.670964582993314 21.739840052227844 14.038273216908765 5 6.716174310429247 20.103639627876614 65.54594418149176 7.634241880202383 6 11.940998857515913 65.31948751428105 11.757385343561285 10.98212828464175 7 10.496572547739513 18.716337522441652 9.40509221478701 61.38199771503182 8 8.91545617757467 66.50073445405582 6.1388118165496985 18.444997551819814 9 7.758691039660519 14.462624449159458 4.545454545454546 73.23322996572547 10-11 10.061000489636038 38.406846743920354 33.7063407866819 17.82581197976171 12-13 10.081401991186551 6.951811653337686 39.74824547086666 43.218540884609105 14-15 11.215725477395136 5.369675208095316 11.208584951852457 72.20601436265709 16-17 41.767994124367554 33.062673412763175 4.266974049290028 20.90235841357924 18-19 43.04104782111963 12.278643708176922 4.348580055492084 40.33172841521136 20-21 12.852945976823893 6.441774114574833 4.437326587236821 76.26795332136446 22-23 11.785947445732006 36.73494369185572 4.45874816386486 47.020360698547414 24-25 41.98935041619063 36.55133017790109 4.3026766770034275 17.15664272890485 26-27 43.98767749306349 39.687040966215115 5.470662640770361 10.854618899951037 28-29 40.12669332462869 12.68973396441978 7.364942059735596 39.81863065121593 30-31 16.103925248898317 7.466949567488166 63.24363473151624 13.185490452097273 32-33 9.872286600293782 64.75742614656438 14.5952342092378 10.775053043904032 34-35 10.788314019911866 43.693895870736085 5.849110494532398 39.66867961481965 36-37 39.717643218540886 39.54219030520647 7.220091398726947 13.520075077525707 38-39 12.602007507752571 11.848172025461073 36.49930634894728 39.05051411783907 40-41 10.146686796148197 5.473722866002937 40.216459931450956 44.16313040639791 42-43 40.01754529133344 5.678757956585605 37.931491757793374 16.37220499428758 44-45 12.145013873021055 35.39966541537457 41.38648604537294 11.068834666231435 46-47 39.71152276807573 7.395544312061368 14.265749959196997 38.627182960665905 48-49 38.47927207442468 4.719887383711441 8.717561612534682 48.0832789293292 50-51 13.9444263097764 5.192182144605844 39.706422392688104 41.156969152929655 52-53 8.174881671291006 5.099355312551004 68.92239268810184 17.803370328056147 54-55 8.87975354986127 4.884119471193079 44.827199281867145 41.408927697078504 56-57 38.570058756324464 4.952464501387302 15.708136118818345 40.76934062346989 58-59 11.765545944181492 7.222131548881998 64.48608617594255 16.526236330993964 60-61 38.357883140199114 36.78084707034437 14.93287905989881 9.928390729557696 62-63 10.053859964093357 74.7143789782928 5.402317610576138 9.829443447037702 64-65 7.329239432022197 77.87865186877754 4.932062999836788 9.860045699363473 66-67 7.260894401827975 77.92251509711114 4.752529786192264 10.064060714868614 68-69 7.3822833360535345 77.68177737881507 5.010608780806267 9.925330504325117 70-71 8.198343398074098 71.53786518687775 7.1201240411294275 13.14366737391872 72-73 10.268075730373756 55.428839562591804 12.87334747837441 21.429737228660027 74-75 11.396278766117186 48.79223110820956 15.484739676840215 24.326750448833035 76 10.702627713399707 50.08976660682226 14.90125673249551 24.30634894728252 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.5 17 3.0 18 3.5 19 5.5 20 5.5 21 4.0 22 5.5 23 7.5 24 10.5 25 13.0 26 14.0 27 19.0 28 24.0 29 25.0 30 26.0 31 44.5 32 54.0 33 46.0 34 50.5 35 59.0 36 86.5 37 110.0 38 274.5 39 5099.5 40 10300.5 41 9421.0 42 8001.0 43 6234.0 44 3243.0 45 1427.5 46 836.0 47 616.5 48 301.5 49 178.0 50 150.0 51 151.0 52 162.5 53 188.5 54 204.0 55 219.5 56 275.5 57 357.5 58 399.0 59 449.0 60 526.5 61 584.0 62 614.0 63 645.5 64 678.0 65 662.0 66 625.5 67 606.0 68 647.0 69 681.0 70 679.5 71 685.0 72 694.0 73 627.0 74 545.0 75 539.0 76 473.0 77 414.0 78 355.0 79 289.0 80 277.5 81 237.5 82 152.0 83 95.0 84 80.0 85 49.0 86 32.0 87 31.0 88 19.0 89 9.5 90 6.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 49016.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.76938142647299 #Duplication Level Percentage of deduplicated Percentage of total 1 62.20652173913044 11.675779337359229 2 23.347826086956523 8.764485066100864 3 9.01086956521739 5.073853435612861 4 3.0217391304347823 2.26864697241717 5 0.826086956521739 0.7752570589195364 6 0.43478260869565216 0.48963603721233884 7 0.13043478260869568 0.17137261302431858 8 0.08695652173913043 0.13056960992329036 9 0.06521739130434784 0.11016810837277623 >10 0.6521739130434783 2.366574179859638 >50 0.03260869565217392 0.4406724334911049 >100 0.10869565217391304 4.13334421413416 >500 0.043478260869565216 5.41863881181655 >1k 0.021739130434782608 8.839970621837768 >5k 0.0 0.0 >10k+ 0.010869565217391304 49.341031499918394 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT 24185 49.341031499918394 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 2895 5.9062346988738375 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC 1438 2.93373592296393 No Hit ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT 835 1.7035253794679288 Illumina PCR Primer Index 9 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC 730 1.4893096131875305 No Hit CTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC 587 1.1975681410151788 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCGT 504 1.0282356781459117 No Hit CTTTACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC 375 0.7650563081442794 No Hit CTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 238 0.485555736902236 No Hit TTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC 237 0.4835155867471846 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC 199 0.40598988085523097 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTTAACAGACCTCGTATGCCG 192 0.39170882976987104 No Hit TATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCT 189 0.38558837930471684 Illumina PCR Primer Index 9 (95% over 21bp) CTTAATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 171 0.3488656765137914 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAACTCGTATGCCGT 163 0.33254447527338016 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGAGCTCGTATGCCGT 159 0.3243838746531745 No Hit CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATATCGTATGCCGT 103 0.21013546597029542 No Hit CCTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 91 0.18565366410967848 No Hit TCTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT 70 0.1428105108535988 No Hit CTCTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCG 55 0.11220825852782765 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.002040150155051412 0.0 3 0.0 0.0 0.0 0.002040150155051412 0.0 4 0.0 0.0 0.0 0.002040150155051412 0.0 5 0.0 0.0 0.0 0.01224090093030847 0.0 6 0.0 0.0 0.0 0.01224090093030847 0.0 7 0.0 0.0 0.0 0.014281051085359882 0.0 8 0.0 0.0 0.0 0.014281051085359882 0.0 9 0.0 0.0 0.0 0.014281051085359882 0.0 10 0.0 0.0 0.0 0.014281051085359882 0.0 11 0.0 0.0 0.0 0.014281051085359882 0.0 12 0.0 0.0 0.0 0.014281051085359882 0.0 13 0.0 0.0 0.0 0.02244165170556553 0.0 14 0.0 0.0 0.0 0.026521952015668353 0.0 15 0.0 0.0 0.0 0.026521952015668353 0.0 16 0.0 0.0 0.0 0.026521952015668353 0.0 17 0.0 0.0 0.0 0.026521952015668353 0.0 18 0.0 0.0 0.0 0.026521952015668353 0.0 19 0.0 0.0 0.0 0.042843153256079645 0.0 20 0.0 0.0 0.0 0.04896360372123388 0.0 21 0.0 0.0 0.0 0.05712420434143953 0.0 22 0.0 0.0 0.0 0.061204504651542355 0.0 23 0.0 0.0 0.0 0.06324465480659376 0.0 24 0.0 0.0 0.0 0.07548555573690223 0.0 25 0.0 0.0 0.0 0.07548555573690223 0.0 26 0.0 0.0 0.0 0.08160600620205648 0.0 27 0.0 0.0 0.0 0.12444915945813612 0.0 28 0.0 0.0 0.0 0.16117186224906152 0.0 29 0.0 0.0 0.0 0.20809531581524401 0.0 30 0.0 0.0 0.0 0.26113921984658073 0.0 31 0.0 0.0 0.0 0.312142973722866 0.0 32 0.0 0.0 0.0 0.40598988085523097 0.0 33 0.0 0.0 0.0 0.5324791904684185 0.0 34 0.0 0.0 0.0 0.6732495511669659 0.0 35 0.0 0.0 0.0 0.8833850171372613 0.0 36 0.0 0.0 0.0 1.1608454382242532 0.0 37 0.0 0.0 0.0 1.6892443283825689 0.0 38 0.0 0.0 0.0 2.1217561612534683 0.0 39 0.0 0.0 0.0 2.5440672433491103 0.0 40 0.0 0.0 0.0 2.972498775909907 0.0 41 0.0 0.0 0.0 3.3764485066100867 0.0 42 0.0 0.0 0.0 3.749795984984495 0.0 43 0.0 0.0 0.0 4.1088624122735435 0.0 44 0.0 0.0 0.0 4.529133344214134 0.0 45 0.0 0.0 0.0 4.814754365921332 0.0 46 0.0 0.0 0.0 5.1513791415048145 0.0 47 0.0 0.0 0.0 5.498204667863555 0.0 48 0.0 0.0 0.0 5.761384037865187 0.0 49 0.0 0.0 0.0 6.042924759262282 0.0 50 0.0 0.0 0.0 6.31426472988412 0.0 51 0.0 0.0 0.0 6.5917251509711114 0.0 52 0.0 0.0 0.0 6.8549045209727435 0.0 53 0.0 0.0 0.0 7.187448996246124 0.0 54 0.0 0.0 0.0 7.39962461237147 0.0 55 0.0 0.0 0.0 7.654643381752897 0.0 56 0.0 0.0 0.0 7.8668189978782435 0.0 57 0.0 0.0 0.0 8.089195364778847 0.0 58 0.0 0.0 0.0 8.299330830749144 0.0 59 0.0 0.0 0.0 8.515586747184592 0.0 60 0.0 0.0 0.0 8.707360861759426 0.0 61 0.0 0.0 0.0 8.890974375714052 0.0 62 0.0 0.0 0.0 9.068467439203525 0.0 63 0.0 0.0 0.0 9.356128611065774 0.0 64 0.0 0.0 0.0 9.547902725640608 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACCAT 15 0.00221218 70.0 69 AAACTAT 15 0.00221218 70.0 68 AAACTAC 20 7.85323E-5 70.0 68 ACAGATT 20 7.85323E-5 70.0 33 TTCGTAT 20 7.85323E-5 70.0 39 AAACAGT 15 0.00221218 70.0 69 ATGGCGG 15 0.00221218 70.0 5 AACTACA 15 0.00221218 70.0 69 CAGATTT 15 0.00221218 70.0 34 GATTTCG 15 0.00221218 70.0 36 AAACGTT 15 0.00221218 70.0 69 AGATTTC 15 0.00221218 70.0 35 TCTTTAT 55 0.0 70.0 1 ATTTCGT 15 0.00221218 70.0 37 TTTCGTA 15 0.00221218 70.0 38 TCTTAAT 40 1.3096724E-10 70.0 1 ACTACAA 15 0.00221218 70.0 70 CTTTACA 50 1.2732926E-11 63.000004 1 AAATATA 45 3.7289283E-10 62.222218 68 CTATACA 60 1.8189894E-12 58.333332 1 >>END_MODULE