SRR1779774_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779774_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	252060
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	17481	6.935253511068794	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2192	0.8696342140760137	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1398	0.5546298500357058	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	801	0.31778148059985717	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	575	0.22812028882012217	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	436	0.1729746885662144	RNA PCR Primer, Index 32 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	409	0.1622629532650956	No Hit
CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	292	0.11584543362691423	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAAAG	15	0.0022228842	70.0	24
TCGATAT	15	0.0022228842	70.0	34
ATCGTAT	15	0.0022228842	70.0	39
ATATCGT	15	0.0022228842	70.0	37
CGCTACA	25	2.3874453E-4	55.999996	24
TCTACAG	20	0.0069457726	52.5	2
TCTAATG	20	0.0069457726	52.5	19
GAAAAGT	20	0.0069457726	52.5	25
CTACATG	20	0.0069457726	52.5	4
CCGTCTT	2755	0.0	50.943737	47
TCTCGTA	2625	0.0	50.8	38
TCGTATG	2765	0.0	50.759495	40
CTCGTAT	2745	0.0	50.746815	39
GCCGTCT	2760	0.0	50.724636	46
CGTCTTC	2780	0.0	50.61151	48
ATCTCGT	2635	0.0	50.607212	37
TATGCCG	2775	0.0	50.576576	43
CGTATGC	2770	0.0	50.541515	41
TGCCGTC	2780	0.0	50.35971	45
CTGCTTG	2795	0.0	50.339893	54