FastQCFastQC Report
Wed 25 May 2016
SRR1779773_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779773_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81090
Sequences flagged as poor quality0
Sequence length76
%GC55

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACCAT150.002217347770.0006257
AAATAAC150.002217347770.0006266
GCAGTGT401.3278623E-1070.0006233
CAATTCC150.002217347770.0006270
GAGGTAT150.002217347770.0006254
GTAGTCT150.002217347770.0006238
TAGATCT1300.064.6159539
CTGTGTA453.783498E-1062.22277534
TGTAGAT1700.061.76524737
TGTGTAG700.060.0005335
AAGTGTA352.941124E-760.0005334
GTGTAGA2000.059.50052636
TCTGACA308.309838E-658.33384711
GTGTACT308.309838E-658.33384736
CGTGTAG1100.057.27323535
CGTATAG252.3776427E-456.00049635
AAATTAT252.3776427E-456.00049656
GATTATT252.3776427E-456.00049657
AATAACA252.3776427E-456.00049667
CCTACGA900.054.44492721
Produced by FastQC (version 0.11.5)