##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779773_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 81090 Sequences flagged as poor quality 0 Sequence length 76 %GC 55 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.384498705142434 31.0 12.0 34.0 12.0 34.0 2 25.202614379084967 24.0 21.0 34.0 12.0 34.0 3 24.60673325934147 23.0 11.0 34.0 11.0 34.0 4 25.436021704279195 31.0 21.0 34.0 11.0 34.0 5 25.498433838944383 31.0 21.0 34.0 11.0 34.0 6 26.82446664200271 31.0 12.0 37.0 11.0 38.0 7 27.95791096312739 34.0 21.0 37.0 12.0 38.0 8 27.04931557528672 31.0 12.0 37.0 11.0 38.0 9 28.61749907510174 34.0 21.0 38.0 12.0 38.0 10-11 27.910611666050066 34.0 21.0 38.0 11.0 38.0 12-13 27.835269453693428 31.0 21.0 37.5 11.0 38.0 14-15 26.98787150080158 31.0 11.5 37.0 11.0 38.0 16-17 26.933068195831794 30.5 16.0 37.5 11.0 38.0 18-19 27.429072635343445 31.0 21.0 37.0 11.0 38.0 20-21 26.472992970773213 29.0 16.0 37.0 11.0 38.0 22-23 26.618578123073128 30.5 16.0 37.5 11.0 38.0 24-25 27.082907880133185 32.0 16.5 37.0 11.0 38.0 26-27 26.020563571340485 29.0 11.0 37.0 11.0 38.0 28-29 27.219990134418545 32.0 11.0 37.5 11.0 38.0 30-31 27.685953878406707 34.0 11.0 38.0 11.0 38.0 32-33 27.870471081514367 34.0 11.0 38.0 11.0 38.0 34-35 27.920649895178197 34.0 11.0 38.0 11.0 38.0 36-37 26.723029966703663 29.5 16.0 37.0 11.0 38.0 38-39 25.963534344555434 26.5 16.0 36.5 11.0 38.0 40-41 26.020606733259342 27.0 11.0 37.0 11.0 38.0 42-43 26.73097175977309 29.0 11.0 37.0 11.0 38.0 44-45 27.894185472931312 34.0 21.0 38.0 11.0 38.0 46-47 27.040128252558887 30.5 15.0 37.5 11.0 38.0 48-49 26.366302873350598 29.0 11.0 37.0 11.0 38.0 50-51 25.08475767665557 26.0 11.0 36.0 11.0 38.0 52-53 26.86778887655691 32.0 11.0 37.0 11.0 38.0 54-55 26.36815266987298 28.5 11.0 37.0 11.0 38.0 56-57 26.766500184979652 30.5 11.0 37.5 11.0 38.0 58-59 27.368097175977308 33.5 11.0 38.0 11.0 38.0 60-61 27.920736219015907 34.0 14.5 38.0 11.0 38.0 62-63 27.907806141324457 34.0 14.5 38.0 11.0 38.0 64-65 27.731853496115427 34.0 15.0 38.0 11.0 38.0 66-67 26.499901344185474 28.0 11.0 37.0 11.0 38.0 68-69 26.38406708595388 28.5 11.0 37.0 11.0 38.0 70-71 26.20356394129979 27.5 11.0 37.0 11.0 38.0 72-73 25.480922431865828 26.5 11.0 36.5 11.0 38.0 74-75 26.290048094709583 29.0 11.0 37.0 11.0 38.0 76 26.037748181033418 27.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 4.0 4 0.0 5 4.0 6 2.0 7 1.0 8 1.0 9 1.0 10 2.0 11 19.0 12 85.0 13 394.0 14 1014.0 15 1809.0 16 2987.0 17 4558.0 18 5962.0 19 6086.0 20 5140.0 21 3879.0 22 2785.0 23 1976.0 24 1644.0 25 1435.0 26 1325.0 27 1395.0 28 1544.0 29 1756.0 30 2055.0 31 2559.0 32 3188.0 33 4158.0 34 5452.0 35 6912.0 36 7191.0 37 3767.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.53052164261931 15.823159452460228 15.33481317055124 36.31150573436922 2 16.974966087063756 14.735479097299297 45.01171537797509 23.277839437661857 3 17.97755580219509 14.031323221112343 42.926378098409174 25.06474287828339 4 14.729858053695413 21.048996756570105 25.6354286137112 38.58571657602328 5 14.884696016771489 22.311012455296584 41.63275373042299 21.17153779750894 6 25.60611666050068 31.092613145887288 16.666666666666664 26.634603526945373 7 23.613269207053893 20.47971389813787 17.415217659390798 38.49179923541744 8 20.352989060052543 32.180959311288994 17.560650723368568 29.905400905289902 9 19.215352548685882 13.736880403547069 18.292818292818293 48.75494875494876 10-11 23.58654628875897 20.802807173339254 26.62621179604825 28.984434741853526 12-13 21.744492957399046 14.370112730950444 31.272971706258172 32.61242260539234 14-15 25.902812037493835 19.44499259990133 20.987913172175627 33.664282190429205 16-17 29.236072994591396 16.478670852117496 21.760849588958305 32.5244065643328 18-19 21.83233222738878 15.830630141717133 27.932089248492176 34.40494838240191 20-21 29.001344367838776 15.640918116898334 23.245229960902332 32.11250755436056 22-23 30.731042478661998 14.662168829246633 21.9651931521042 32.64159553998717 24-25 22.772008583902718 21.076194469796008 19.50926222836141 36.64253471793986 26-27 28.054586041463686 20.191655464154014 22.217974174611204 29.535784319771096 28-29 24.536260483473114 20.262703502713368 21.89257523433646 33.30846077947706 30-31 23.560500009250294 19.560672681413692 23.36624382542844 33.51258348390757 32-33 24.508975647658808 18.33424806211111 23.87380442893174 33.282971861298336 34-35 24.09580601994314 19.224721110501292 23.376767533500654 33.30270533605491 36-37 28.87502004267548 14.44922727777298 28.706661568632285 27.969091110919248 38-39 27.908109774899785 12.849213691026826 34.11717545482578 25.12550107924761 40-41 25.75220311179906 21.250393137514877 22.224757488113372 30.77264626257269 42-43 20.283661702586873 21.996731723861497 25.51475349181389 32.20485308173774 44-45 20.516916018106247 16.38134119417344 29.409080257039605 33.692662530680714 46-47 27.56351751356685 15.332387765170202 25.87876171682289 31.22533300444006 48-49 26.884154050137216 15.847183250593568 28.510375874934475 28.75828682433474 50-51 34.967747505519306 14.200347808927097 25.779178332243863 25.052726353309733 52-53 19.708789955041905 18.56047757954006 28.47037637757399 33.260356087844045 54-55 26.410405052049928 16.40312792935024 24.97903201933988 32.20743499925995 56-57 26.64298620489766 17.21273564834514 23.787147182703396 32.3571309640538 58-59 20.28552927754309 19.637383984459316 27.252320310813726 32.82476642718387 60-61 20.007153781636983 18.02506290394198 26.960506191721343 35.00727712269969 62-63 19.991489571641775 19.984705896863474 26.4088459119109 33.61495861958385 64-65 19.985322594570594 21.61155444824056 25.57075372793764 32.832369229251206 66-67 18.23693023083707 29.01467169085224 18.876465473114234 33.871932605196456 68-69 18.718810720784628 28.039971625080963 19.31776825093298 33.92344940320143 70-71 17.78421880299713 29.9904412444883 18.23872221023095 33.98661774228362 72-73 17.32765159690917 31.60578945096419 17.322101420228545 33.7444575318981 74-75 19.658725802771386 24.274006055859445 21.240526156749322 34.826741984619844 76 21.334040480037494 22.761078974308376 22.635272642056318 33.269607903597816 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.5 3 1.5 4 2.0 5 1.0 6 0.5 7 1.5 8 2.0 9 1.0 10 1.0 11 1.0 12 0.0 13 0.0 14 1.0 15 2.0 16 2.0 17 2.0 18 3.5 19 7.5 20 11.0 21 12.0 22 17.0 23 29.0 24 46.5 25 57.0 26 83.5 27 129.5 28 174.0 29 199.0 30 228.5 31 343.0 32 479.0 33 530.0 34 610.5 35 760.5 36 940.0 37 1050.0 38 1157.5 39 1391.5 40 1644.0 41 1894.5 42 2019.0 43 2138.5 44 2286.5 45 2436.5 46 2558.0 47 2626.0 48 2740.0 49 2767.5 50 2749.0 51 2906.5 52 3115.0 53 3177.0 54 3188.0 55 3288.0 56 3570.5 57 3760.0 58 3767.0 59 3743.5 60 3700.0 61 3683.0 62 3686.0 63 3653.0 64 3464.5 65 3124.0 66 2827.5 67 2716.0 68 2501.0 69 2091.0 70 1723.5 71 1551.0 72 1405.5 73 1123.0 74 886.5 75 787.0 76 697.0 77 541.0 78 405.0 79 335.0 80 285.0 81 184.5 82 118.0 83 102.0 84 77.5 85 42.0 86 20.0 87 9.0 88 7.5 89 3.5 90 2.5 91 3.0 92 2.0 93 1.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.003699593044765076 5 0.0 6 0.0 7 0.0 8 0.013565174497471945 9 0.011098779134295227 10-11 0.014798372179060304 12-13 0.014798372179060304 14-15 0.012331976815883588 16-17 0.01911456406461956 18-19 0.016031569860648662 20-21 0.013565174497471945 22-23 0.017264767542237023 24-25 0.009865581452706869 26-27 0.008632383771118511 28-29 0.012331976815883588 30-31 0.014181773338266123 32-33 0.011715377975089408 34-35 0.011715377975089408 36-37 0.016031569860648662 38-39 0.01849796522382538 40-41 0.014181773338266123 42-43 0.00924898261191269 44-45 0.016031569860648662 46-47 0.012331976815883588 48-49 0.015414971019854482 50-51 0.013565174497471945 52-53 0.0178813663830312 54-55 0.017264767542237023 56-57 0.012948575656677766 58-59 0.015414971019854482 60-61 0.017264767542237023 62-63 0.016031569860648662 64-65 0.016031569860648662 66-67 0.01911456406461956 68-69 0.040078924651621654 70-71 0.015414971019854482 72-73 0.014181773338266123 74-75 0.014181773338266123 76 0.016031569860648662 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 81090.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 98.58305586385498 #Duplication Level Percentage of deduplicated Percentage of total 1 98.7340663739508 97.33505981008756 2 1.1145719968476753 2.1975582685904547 3 0.1338487134261518 0.3958564557898631 4 0.015011070664615154 0.059193488716241215 5 0.0025018451107691924 0.012331976815883588 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.003699593044765076 0.0 5 0.0 0.0 0.0 0.007399186089530152 0.0 6 0.0 0.0 0.0 0.007399186089530152 0.0 7 0.0 0.0 0.0 0.007399186089530152 0.0 8 0.0 0.0 0.0 0.007399186089530152 0.0 9 0.0 0.0 0.0 0.011098779134295227 0.0 10 0.0 0.0 0.0 0.014798372179060304 0.0 11 0.0 0.0 0.0 0.014798372179060304 0.0 12 0.0 0.0 0.0 0.014798372179060304 0.0 13 0.0 0.0 0.0 0.014798372179060304 0.0 14 0.0 0.0 0.0 0.01849796522382538 0.0 15 0.0 0.0 0.0 0.01849796522382538 0.0 16 0.0 0.0 0.0 0.019731162905413737 0.0 17 0.0 0.0 0.0 0.019731162905413737 0.0 18 0.0 0.0 0.0 0.028363546676532247 0.0 19 0.0 0.0 0.0 0.03452953508447404 0.0 20 0.0 0.0 0.0 0.039462325810827474 0.0 21 0.0 0.0 0.0 0.039462325810827474 0.0 22 0.0 0.0 0.0 0.05549389567147614 0.0 23 0.0 0.0 0.0 0.057960291034652854 0.0 24 0.0 0.0 0.0 0.06165988407941793 0.0 25 0.0 0.0 0.0 0.06535947712418301 0.0 26 0.0 0.0 0.0 0.07522505857688988 0.0 27 0.0 0.0 0.0 0.09495622148230361 0.0 28 0.0 0.0 0.0 0.12578616352201258 0.0 29 0.0 0.0 0.0 0.15291651251695645 0.0 30 0.0 0.0 0.0 0.19854482673572574 0.0 31 0.0 0.0 0.0 0.2145763965963744 0.0 32 0.0 0.0 0.0 0.27500308299420395 0.0 33 0.0 0.0 0.0 0.3378961647552103 0.0 34 0.0 0.0 0.0 0.41065482796892344 0.0 35 0.0 0.0 0.0 0.5734369219385868 0.0 36 0.0 0.0 0.0 0.7127882599580713 0.0 37 0.0 0.0 0.0 1.0272536687631026 0.0 38 0.0 0.0 0.0 1.2923911703045998 0.0 39 0.0 0.0 0.0 1.6191885559255148 0.0 40 0.0 0.0 0.0 1.9792822789493156 0.0 41 0.0 0.0 0.0 2.355407571833765 0.0 42 0.0 0.0 0.0 2.7315328647182144 0.0 43 0.0 0.0 0.0 3.036132692070539 0.0 44 0.0 0.0 0.0 3.434455543223579 0.0 45 0.0 0.0 0.0 3.6983598470834873 0.0 46 0.0 0.0 0.0 4.0202244419780495 0.0 47 0.0 0.0 0.0 4.381551362683438 0.0 48 0.0 0.0 0.0 4.625724503637933 0.0 49 0.0 0.0 0.0 4.860032063139721 0.0 50 0.0 0.0 0.0 5.130102355407572 0.0 51 0.0 0.0 0.0 5.46183253175484 0.0 52 0.0 0.0 0.0 5.778764335923048 0.0 53 0.0 0.0 0.0 6.1758539893945 0.0 54 0.0 0.0 0.0 6.527315328647182 0.0 55 0.0 0.0 0.0 6.788753237143914 0.0 56 0.0 0.0 0.0 7.098285855222592 0.0 57 0.0 0.0 0.0 7.370822542853619 0.0 58 0.0 0.0 0.0 7.613762486126526 0.0 59 0.0 0.0 0.0 7.8764335923048465 0.0 60 0.0 0.0 0.0 8.034282895548156 0.0 61 0.0 0.0 0.0 8.200764582562584 0.0 62 0.0 0.0 0.0 8.308052780860772 0.0 63 0.0 0.0 0.0 8.469601677148846 0.0 64 0.0 0.0 0.0 8.629917375755333 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCAT 15 0.0022173477 70.00062 57 AAATAAC 15 0.0022173477 70.00062 66 GCAGTGT 40 1.3278623E-10 70.00062 33 CAATTCC 15 0.0022173477 70.00062 70 GAGGTAT 15 0.0022173477 70.00062 54 GTAGTCT 15 0.0022173477 70.00062 38 TAGATCT 130 0.0 64.61595 39 CTGTGTA 45 3.783498E-10 62.222775 34 TGTAGAT 170 0.0 61.765247 37 TGTGTAG 70 0.0 60.00053 35 AAGTGTA 35 2.941124E-7 60.00053 34 GTGTAGA 200 0.0 59.500526 36 TCTGACA 30 8.309838E-6 58.333847 11 GTGTACT 30 8.309838E-6 58.333847 36 CGTGTAG 110 0.0 57.273235 35 CGTATAG 25 2.3776427E-4 56.000496 35 AAATTAT 25 2.3776427E-4 56.000496 56 GATTATT 25 2.3776427E-4 56.000496 57 AATAACA 25 2.3776427E-4 56.000496 67 CCTACGA 90 0.0 54.444927 21 >>END_MODULE