SRR1779773_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779773_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	81090
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	25516	31.466272043408562	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	3067	3.782217289431496	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	1886	2.325810827475644	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	888	1.0950795412504626	RNA PCR Primer, Index 15 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	806	0.993957331360217	No Hit
CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	658	0.81144407448514	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT	439	0.5413737822172894	No Hit
CTTTACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	387	0.4772475027746948	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTATCTCGTATGCCGTC	247	0.30459982735232455	No Hit
TTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	214	0.2639043038599087	No Hit
CTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	199	0.24540633863608338	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC	189	0.2330743618201998	No Hit
TATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCT	189	0.2330743618201998	No Hit
CTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	168	0.20717721050684426	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCG	146	0.18004686151190036	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAGCTCGTATGCCGT	116	0.1430509310642496	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAACTCGTATGCCGT	112	0.13811814033789618	No Hit
CCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG	104	0.1282525588851893	No Hit
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATATCGTATGCCGT	84	0.10358860525342213	No Hit
TCTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	83	0.10235540757183377	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTATA	20	7.884307E-5	70.00001	1
AACCCCC	20	7.884307E-5	70.00001	70
AAAAGAG	20	7.884307E-5	70.00001	68
TCTTAAT	15	0.0022174302	70.00001	1
TCTTTAT	40	1.3278623E-10	70.00001	1
TTTACAC	80	0.0	65.62501	2
CTTTACA	80	0.0	65.62501	1
TTACACA	85	0.0	61.76471	3
CTATACA	125	0.0	61.6	1
GTTATCT	40	1.0506483E-8	61.250004	33
AGTTATC	35	2.941324E-7	60.000004	32
ACAAACA	25	2.377755E-4	56.000004	70
TAAACTC	25	2.377755E-4	56.000004	34
GAGGTTG	25	2.377755E-4	56.000004	5
GTTAAAC	25	2.377755E-4	56.000004	32
TTAAACT	25	2.377755E-4	56.000004	33
TTATCTC	45	2.6619091E-8	54.444447	34
TTAATCT	3670	0.0	53.405994	34
TAATCTC	3685	0.0	53.378563	35
GTTAATC	3670	0.0	53.310627	33

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content