##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779770_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 215928 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.391968619169354 34.0 27.0 34.0 12.0 34.0 2 27.885434033566746 34.0 23.0 34.0 12.0 34.0 3 26.798858878885554 32.0 21.0 34.0 11.0 34.0 4 29.090798784780112 34.0 23.0 34.0 12.0 34.0 5 28.720740246748917 34.0 23.0 34.0 11.0 34.0 6 31.08496350635397 36.0 27.0 38.0 11.0 38.0 7 32.02961635359935 37.0 28.0 38.0 12.0 38.0 8 31.25705790819162 37.0 27.0 38.0 11.0 38.0 9 32.659641176688524 37.0 31.0 38.0 12.0 38.0 10-11 32.382615964580786 37.0 31.0 38.0 11.0 38.0 12-13 31.4328711422326 36.5 28.5 38.0 11.0 38.0 14-15 31.44302498981142 36.5 27.5 38.0 11.0 38.0 16-17 31.11788651772813 36.0 27.0 38.0 11.0 38.0 18-19 31.706724000592793 37.0 29.0 38.0 11.5 38.0 20-21 30.565366696306178 35.5 26.5 38.0 11.0 38.0 22-23 30.560619743618243 35.5 26.0 38.0 11.0 38.0 24-25 31.716921844318477 36.5 29.0 38.0 11.0 38.0 26-27 30.316061372309285 35.5 24.5 38.0 11.0 38.0 28-29 32.355912619021154 37.0 31.0 38.0 11.0 38.0 30-31 32.82737764439999 37.5 33.0 38.0 11.0 38.0 32-33 32.92596374717499 38.0 34.0 38.0 11.0 38.0 34-35 32.968964191767625 38.0 34.0 38.0 11.0 38.0 36-37 30.94728103812382 36.5 27.0 38.0 11.0 38.0 38-39 29.254297728872587 34.0 23.0 37.5 11.0 38.0 40-41 30.425000463117335 35.0 25.0 38.0 11.0 38.0 42-43 31.404861805787114 36.5 28.0 38.0 11.0 38.0 44-45 33.013212737579195 37.5 34.0 38.0 11.0 38.0 46-47 31.605868622874294 37.0 28.5 38.0 11.0 38.0 48-49 31.08378255714868 36.5 27.5 38.0 11.0 38.0 50-51 28.932512226297654 34.0 22.0 37.5 11.0 38.0 52-53 32.19675771553481 37.0 29.5 38.0 11.0 38.0 54-55 31.27594383312956 36.5 27.5 38.0 11.0 38.0 56-57 31.69139713237746 37.0 29.0 38.0 11.0 38.0 58-59 32.74666787077174 37.0 33.0 38.0 11.0 38.0 60-61 33.19891352673113 38.0 34.0 38.0 11.0 38.0 62-63 33.096860990700605 38.0 34.0 38.0 11.0 38.0 64-65 32.84183385202475 38.0 32.5 38.0 11.0 38.0 66-67 30.791266070171538 36.5 25.0 38.0 11.0 38.0 68-69 30.872144881627207 36.5 26.0 38.0 11.0 38.0 70-71 30.505228594716755 36.0 25.0 38.0 11.0 38.0 72-73 29.303490052239635 34.0 22.5 38.0 11.0 38.0 74-75 31.39112806120559 36.5 28.0 38.0 11.0 38.0 76 31.688914823459672 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 2.0 4 1.0 5 1.0 6 3.0 7 0.0 8 0.0 9 0.0 10 3.0 11 18.0 12 62.0 13 332.0 14 898.0 15 1656.0 16 2824.0 17 4400.0 18 5657.0 19 6147.0 20 5340.0 21 4330.0 22 3493.0 23 3134.0 24 3006.0 25 3159.0 26 3565.0 27 4087.0 28 4953.0 29 6117.0 30 7465.0 31 9547.0 32 12280.0 33 16456.0 34 22430.0 35 30055.0 36 34590.0 37 19917.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.54731206698529 18.691415657070877 10.917991182245935 29.8432810936979 2 21.385832314475195 17.45257678485421 37.403671594235114 23.75791930643548 3 20.475343633062874 17.39700270460524 36.20651328220518 25.92114038012671 4 14.368215331036271 18.531640176355083 32.364954984994995 34.735189507613654 5 14.203808676966394 29.555685228409466 38.90972916898225 17.33077692564188 6 27.967655885295102 33.08324997221296 16.825052795376237 22.124041347115707 7 27.52630506465118 25.550646511800228 20.199788818495055 26.723259605053535 8 24.202146135427906 31.234282591479367 18.199080227673754 26.36449104541897 9 23.299509547384947 16.076564330803112 19.54539349675579 41.078532625056155 10-11 24.828812723319217 23.180042469728164 26.79344289627799 25.19770191067463 12-13 24.678693004191466 19.50536090591205 28.74279230252646 27.073153787370032 14-15 23.8033266719618 22.312970222974553 23.58681280002223 30.296890305041412 16-17 25.23747551142337 22.69182139433208 25.81825423658165 26.2524488576629 18-19 22.467840726203296 22.82978452418169 27.6327764076557 27.06959834195931 20-21 24.63464731395438 22.33357956479554 27.06654964883071 25.965223472419375 22-23 25.060670618747682 21.54061689514635 27.375185253797703 26.023527232308265 24-25 22.902787329771886 24.463293712819585 24.020775876641494 28.613143080767028 26-27 23.50936099758015 23.608702196389906 26.888582709073855 25.993354096956082 28-29 23.334745890269797 24.3703122213963 26.025551070880255 26.269390817453647 30-31 23.184549654381883 24.069841490384057 26.20375837993678 26.54185047529728 32-33 23.173236569771884 24.23774380967157 25.843188380962527 26.74583123959402 34-35 23.501282894432148 23.999157087412815 26.120795857686712 26.378764160468325 36-37 24.349402779771857 21.81949545427178 29.72878467188781 24.102317094068553 38-39 23.988152855032258 20.78854374597646 32.822334508167486 22.400968890823787 40-41 23.454940392934223 22.891290050668324 25.850570134405366 27.80319942199209 42-43 21.462247766544245 23.38818364123916 26.936703701816867 28.21286489039973 44-45 21.25103917486621 22.30908707764344 29.21847102930994 27.22140271818041 46-47 23.038572067033932 21.523894211063794 29.45181212529612 25.985721596606158 48-49 22.987893552181845 21.967135671875436 29.92825980233237 25.116710973610353 50-51 24.503288254909226 20.726658021489442 31.49870322341608 23.271350500185253 52-53 19.8644840226848 23.653003142433036 29.235742686374994 27.24677014850717 54-55 21.813554651407824 22.665033334336798 28.554987182663826 26.966424831591553 56-57 21.810885412324822 22.986078306054964 27.877659525198915 27.3253767564213 58-59 19.993284472078457 23.822987946785233 28.58777079208494 27.595956789051375 60-61 19.87096804073816 23.10880877009756 28.449092353258564 28.571130835905713 62-63 20.075121632668182 23.816614293025314 27.957103787806858 28.151160286499643 64-65 20.59646953392568 24.116515106254386 26.92472460928907 28.362290750530867 66-67 19.411760619316354 24.639731746910247 23.684033800259822 32.26447383351358 68-69 19.767404154390647 24.984018011006725 23.731400670780292 31.517177163822335 70-71 19.87897959372713 25.312856044536254 23.136758153709348 31.67140620802727 72-73 19.34293892069138 25.29131699364568 21.867068674855037 33.498675410807905 74-75 20.7073981789383 25.932761511314478 23.915328967478395 29.444511342268825 76 21.198058504233128 25.350599307137962 24.618370106893423 28.83297208173549 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 1.0 6 0.5 7 0.0 8 0.0 9 0.5 10 3.0 11 3.0 12 1.0 13 2.5 14 6.5 15 9.0 16 10.0 17 11.0 18 15.5 19 28.5 20 53.5 21 70.0 22 79.0 23 113.5 24 191.5 25 244.0 26 308.0 27 462.5 28 714.5 29 876.0 30 1082.0 31 1486.5 32 2015.0 33 2345.0 34 2710.0 35 3589.0 36 4693.5 37 5284.0 38 5981.5 39 7312.5 40 8726.0 41 10158.0 42 10810.0 43 11239.0 44 12050.0 45 12549.0 46 12666.0 47 12665.5 48 12423.0 49 11727.5 50 11274.0 51 10743.0 52 9604.0 53 8405.0 54 7814.0 55 7292.0 56 6381.0 57 5640.0 58 5288.0 59 5023.0 60 4492.0 61 4160.5 62 4095.0 63 3928.0 64 3568.0 65 3219.0 66 2934.5 67 2806.0 68 2700.5 69 2506.5 70 2332.0 71 2246.0 72 2125.0 73 1860.5 74 1589.0 75 1461.0 76 1347.0 77 1092.0 78 812.0 79 673.0 80 596.0 81 447.0 82 292.5 83 210.0 84 172.5 85 110.0 86 64.5 87 44.0 88 30.5 89 13.0 90 9.5 91 6.5 92 3.0 93 4.0 94 4.5 95 3.0 96 2.0 97 1.0 98 1.5 99 4.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.002315586677040495 9 0.002315586677040495 10-11 0.004399614686376941 12-13 0.006020525360305287 14-15 0.0030102626801526435 16-17 0.005094290689489089 18-19 0.004862732021785039 20-21 0.0030102626801526435 22-23 0.003704938683264792 24-25 0.002084028009336445 26-27 0.0025471453447445443 28-29 0.0034733800155607422 30-31 0.004862732021785039 32-33 0.0030102626801526435 34-35 0.00463117335408099 36-37 0.005094290689489089 38-39 0.005094290689489089 40-41 0.006483642695713386 42-43 0.003241821347856693 44-45 0.0053258493571931385 46-47 0.0034733800155607422 48-49 0.00463117335408099 50-51 0.003704938683264792 52-53 0.005788966692601237 54-55 0.004399614686376941 56-57 0.0027787040124485937 58-59 0.004862732021785039 60-61 0.005788966692601237 62-63 0.0053258493571931385 64-65 0.0034733800155607422 66-67 0.005788966692601237 68-69 0.027787040124485938 70-71 0.006483642695713386 72-73 0.005557408024897187 74-75 0.00463117335408099 76 0.005557408024897187 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 215928.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 93.9124660881972 #Duplication Level Percentage of deduplicated Percentage of total 1 96.22512751755063 90.36739024824425 2 2.5760741673762277 4.838509557688016 3 0.6158890269019979 1.7351897205907993 4 0.25356143530454583 0.9525031877725108 5 0.12614839128639138 0.592345325938193 6 0.0813353157823016 0.4583040051106926 7 0.04002032855573688 0.26308854238304047 8 0.022119704667301298 0.16618528115590966 9 0.021570437344958206 0.1823159669099373 >10 0.03815367522988627 0.444168164206638 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00463117335408099 0.0 2 0.0 0.0 0.0 0.005557408024897188 0.0 3 0.0 0.0 0.0 0.006020525360305287 0.0 4 0.0 0.0 0.0 0.00879922937275388 0.0 5 0.0 0.0 0.0 0.010188581378978177 0.0 6 0.0 0.0 0.0 0.010188581378978177 0.0 7 0.0 0.0 0.0 0.010651698714386277 0.0 8 0.0 0.0 0.0 0.010651698714386277 0.0 9 0.0 0.0 0.0 0.015282872068467266 0.0 10 0.0 0.0 0.0 0.015745989403875366 0.0 11 0.0 0.0 0.0 0.015745989403875366 0.0 12 0.0 0.0 0.0 0.016672224074691565 0.0 13 0.0 0.0 0.0 0.017135341410099664 0.0 14 0.0 0.0 0.0 0.01898781075173206 0.0 15 0.0 0.0 0.0 0.01898781075173206 0.0 16 0.0 0.0 0.0 0.01945092808714016 0.0 17 0.0 0.0 0.0 0.020377162757956355 0.0 18 0.0 0.0 0.0 0.020840280093364454 0.0 19 0.0 0.0 0.0 0.021303397428772554 0.0 20 0.0 0.0 0.0 0.022229632099588753 0.0 21 0.0 0.0 0.0 0.02361898410581305 0.0 22 0.0 0.0 0.0 0.03149197880775073 0.0 23 0.0 0.0 0.0 0.03704938683264792 0.0 24 0.0 0.0 0.0 0.039364973509688414 0.0 25 0.0 0.0 0.0 0.04168056018672891 0.0 26 0.0 0.0 0.0 0.0477010855470342 0.0 27 0.0 0.0 0.0 0.08706605905672261 0.0 28 0.0 0.0 0.0 0.11994738987069764 0.0 29 0.0 0.0 0.0 0.14773442999518357 0.0 30 0.0 0.0 0.0 0.19450928087140157 0.0 31 0.0 0.0 0.0 0.21673891297099032 0.0 32 0.0 0.0 0.0 0.2690711718721055 0.0 33 0.0 0.0 0.0 0.3232559001148531 0.0 34 0.0 0.0 0.0 0.39781779111555704 0.0 35 0.0 0.0 0.0 0.542310399762884 0.0 36 0.0 0.0 0.0 0.6553110296024601 0.0 37 0.0 0.0 0.0 0.9716201696861917 0.0 38 0.0 0.0 0.0 1.2874661924345152 0.0 39 0.0 0.0 0.0 1.6977881516060909 0.0 40 0.0 0.0 0.0 2.230373087325405 0.0 41 0.0 0.0 0.0 2.89170464228817 0.0 42 0.0 0.0 0.0 3.602126634804194 0.0 43 0.0 0.0 0.0 4.364417768885925 0.0 44 0.0 0.0 0.0 5.061409358675114 0.0 45 0.0 0.0 0.0 5.488866659256789 0.0 46 0.0 0.0 0.0 6.070078915193953 0.0 47 0.0 0.0 0.0 6.7360416435107995 0.0 48 0.0 0.0 0.0 7.18433922418584 0.0 49 0.0 0.0 0.0 7.5858619539846615 0.0 50 0.0 0.0 0.0 8.175410321959172 0.0 51 0.0 0.0 0.0 8.90435700789152 0.0 52 0.0 0.0 0.0 9.536975288058983 0.0 53 0.0 0.0 0.0 10.398373531918047 0.0 54 0.0 0.0 0.0 11.178263124745285 0.0 55 0.0 0.0 0.0 11.652958393538587 0.0 56 0.0 0.0 0.0 12.18785891593494 0.0 57 0.0 0.0 0.0 12.590307880404579 0.0 58 0.0 0.0 0.0 12.961264866066466 0.0 59 0.0 0.0 0.0 13.393816457337632 0.0 60 0.0 0.0 0.0 13.669834389240858 0.0 61 0.0 0.0 0.0 13.94955725982735 0.0 62 0.0 0.0 0.0 14.170927346152421 0.0 63 0.0 0.0 0.0 14.49047830758401 0.0 64 0.0 0.0 0.0 14.831795783779778 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTGATA 15 0.0022226549 69.99838 21 GATCTAG 25 2.3869486E-4 55.9987 41 ATCTCGG 175 0.0 49.998844 42 TCTCGGT 195 0.0 48.46042 43 GCGTGTA 65 1.8371793E-10 48.46042 34 GATCTCG 170 0.0 47.35184 41 GCGAGAA 30 5.86941E-4 46.665585 13 CGTGCGA 30 5.86941E-4 46.665585 10 CCGCGTA 30 5.86941E-4 46.665585 34 CTCGGTG 200 0.0 45.498943 44 TGCCTAC 85 1.8189894E-12 45.293068 19 GCCGTAT 125 0.0 44.79896 54 ATTTCGG 55 1.3062345E-7 44.544422 42 GTGTCGA 95 0.0 44.2095 36 CGCGTAG 40 4.582983E-5 43.74899 35 GCGTAGA 40 4.582983E-5 43.74899 36 TAGATCT 180 0.0 42.776783 39 AGATCTC 140 0.0 42.49902 40 CGGTGTT 75 7.512426E-10 41.999027 46 CGTATCA 135 0.0 41.480522 56 >>END_MODULE