##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779768_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 116230 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.447070463735695 32.0 23.0 34.0 12.0 34.0 2 26.705807450744214 32.0 21.0 34.0 12.0 34.0 3 25.877002495052913 31.0 21.0 34.0 11.0 34.0 4 27.33057730362213 32.0 23.0 34.0 12.0 34.0 5 27.14438613094726 32.0 23.0 34.0 11.0 34.0 6 29.059192979437324 34.0 21.0 38.0 11.0 38.0 7 30.081089219650693 35.0 25.0 38.0 12.0 38.0 8 29.357059279015743 34.0 21.0 38.0 11.0 38.0 9 30.755854770713242 36.0 26.0 38.0 12.0 38.0 10-11 30.22865009033812 36.0 24.5 38.0 11.0 38.0 12-13 29.735348016863117 35.5 24.0 38.0 11.0 38.0 14-15 29.353226361524563 34.5 22.0 38.0 11.0 38.0 16-17 29.14988815280048 34.5 23.5 38.0 11.0 38.0 18-19 29.6992514841263 34.5 23.0 38.0 11.0 38.0 20-21 28.662144024778456 33.0 22.0 37.5 11.0 38.0 22-23 28.68255613869053 33.5 23.0 37.5 11.0 38.0 24-25 29.497621096102556 35.0 22.5 38.0 11.0 38.0 26-27 28.32494192549256 33.5 21.0 38.0 11.0 38.0 28-29 29.948984771573606 36.0 23.0 38.0 11.0 38.0 30-31 30.388656112879637 37.0 24.0 38.0 11.0 38.0 32-33 30.51022971694055 37.0 25.0 38.0 11.0 38.0 34-35 30.55497720037856 37.0 25.0 38.0 11.0 38.0 36-37 28.916179127591846 34.5 22.0 38.0 11.0 38.0 38-39 27.715021939258367 31.5 21.0 37.0 11.0 38.0 40-41 28.350008603630734 34.0 21.0 37.0 11.0 38.0 42-43 29.192510539447646 35.0 22.5 38.0 11.0 38.0 44-45 30.565563967994493 37.0 26.0 38.0 11.0 38.0 46-47 29.449255785941666 35.5 23.5 38.0 11.0 38.0 48-49 28.826473371762884 35.0 22.0 38.0 11.0 38.0 50-51 27.120394906650606 31.0 19.5 37.0 11.0 38.0 52-53 29.66186870859503 35.0 23.0 38.0 11.0 38.0 54-55 28.95906392497634 35.0 22.0 38.0 11.0 38.0 56-57 29.356134388712036 35.5 22.5 38.0 11.0 38.0 58-59 30.181080616019962 36.5 23.0 38.0 11.0 38.0 60-61 30.6825346296137 37.0 25.0 38.0 11.0 38.0 62-63 30.63549427858556 37.0 24.5 38.0 11.0 38.0 64-65 30.413159253204853 37.0 24.0 38.0 11.0 38.0 66-67 28.738978749032093 34.0 21.0 38.0 11.0 38.0 68-69 28.724658005678396 34.0 21.0 38.0 11.0 38.0 70-71 28.46086638561473 34.0 21.0 38.0 11.0 38.0 72-73 27.497500645272304 32.0 21.0 37.0 11.0 38.0 74-75 28.88028047836187 35.0 22.0 37.5 11.0 38.0 76 29.00868106340876 34.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 4.0 4 1.0 5 0.0 6 0.0 7 0.0 8 1.0 9 0.0 10 0.0 11 13.0 12 76.0 13 396.0 14 1005.0 15 1749.0 16 2848.0 17 4419.0 18 5670.0 19 5876.0 20 4999.0 21 3848.0 22 2878.0 23 2241.0 24 1966.0 25 1835.0 26 1877.0 27 2052.0 28 2333.0 29 2880.0 30 3282.0 31 4396.0 32 5558.0 33 7385.0 34 9946.0 35 13339.0 36 15031.0 37 8325.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.382431386044914 17.525595801428203 13.72451174395595 33.36746106857093 2 18.6303019874387 15.076142131979694 43.03019874386991 23.263357136711694 3 18.656433905771415 15.47303575730461 39.306363354785425 26.564166982138556 4 14.90579024348275 20.536006194614124 29.536264303536093 35.02193925836703 5 14.82835756689323 26.984427428374776 39.49152542372881 18.695689581003183 6 27.2150047319969 32.290286500903385 16.02254151251828 24.472167254581436 7 25.84788780865525 22.272218876365827 20.39404628753334 31.48584702744558 8 21.32950165198238 32.776362885462554 17.21159140969163 28.682544052863435 9 21.81305066079295 14.708666024229075 18.925523127753305 44.55276018722467 10-11 24.601300103681332 21.984744647074766 26.75795786493893 26.655997384304968 12-13 23.241427078000577 17.32911158242524 29.7642043132413 29.665257026332885 14-15 24.85125641544094 21.171277753638464 22.40037513927906 31.577090691641533 16-17 27.240069352125523 19.61305644110017 24.016830366938137 29.130043839836173 18-19 22.400664246011942 19.05233088399787 27.54771041627231 30.999294453717884 20-21 26.567978352240708 19.13236882068755 25.033448197238968 29.26620462983278 22-23 28.245634413598175 18.13390809789927 24.49159578907517 29.12886169942739 24-25 23.09052425079373 22.795401942816827 21.589960679039432 32.524113127350006 26-27 25.791144686123346 22.238522164096917 24.41019066629956 27.560142483480178 28-29 24.03710061131689 22.432017345740356 24.23499348244131 29.295888560501442 30-31 23.72991460345458 21.762997698380264 24.684549033104606 29.82253866506055 32-33 23.80370579099752 21.463817558411165 25.00613042973237 29.726346220858947 34-35 24.00579914647577 21.744218061674008 24.71864675110132 29.5313360407489 36-37 26.496300120461196 18.098864223025295 29.424367578729992 25.980468077783513 38-39 25.680814999010504 16.771065470095767 33.49394687707041 24.05417265382332 40-41 24.612915854639635 22.06648511678132 24.325533571671336 28.995065456907714 42-43 20.473396200440526 22.703572411894275 26.541420016519822 30.281611371145374 44-45 20.457488502557617 19.38668834940179 29.41194185241113 30.743881295629468 46-47 25.246293762852446 18.82114555638729 27.848618603890795 28.083942076869466 48-49 24.80306999995698 19.20341761205973 29.41452313040186 26.57898925758143 50-51 29.955086729074893 17.705035104625548 28.486801349118945 23.853076817180614 52-53 19.78997272484792 21.463909897352504 28.850571745695774 29.895545632103797 54-55 24.18969033135148 19.85570593954621 26.559313721272403 29.39529000782991 56-57 23.967080809471366 20.296152257709252 26.18435090859031 29.55241602422907 58-59 20.354922669878896 22.101572414979888 27.823356062724514 29.7201488524167 60-61 19.989588755856325 20.705899561609183 27.63367908415469 31.670832598379807 62-63 20.230940324641523 21.999991395665997 27.231856686212847 30.537211593479636 64-65 20.548770257305968 23.11838827775794 26.12294415501168 30.20989730992441 66-67 19.24298092394531 27.033875700186716 21.05507705280548 32.6680663230625 68-69 19.580362406461525 26.954572251076847 21.396697806713686 32.068367535747946 70-71 18.9244536224402 27.86009292720702 20.6078988125968 32.60755463775598 72-73 18.205166813654845 28.651939168405427 19.738862956828495 33.404031061111226 74-75 20.380472191629956 25.320501789647576 22.712606690528634 31.58641932819383 76 21.44602570941818 23.8190703997522 23.72012183579701 31.014782055032608 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 1.5 6 1.5 7 1.0 8 0.0 9 0.5 10 0.5 11 0.5 12 1.0 13 0.5 14 0.0 15 0.5 16 1.5 17 2.0 18 4.0 19 8.0 20 19.0 21 28.0 22 32.0 23 51.5 24 87.0 25 107.0 26 142.5 27 215.0 28 331.0 29 410.0 30 526.0 31 696.5 32 930.5 33 1110.0 34 1338.5 35 1783.0 36 2267.0 37 2535.0 38 2804.0 39 3437.5 40 4010.0 41 4495.0 42 4772.0 43 5014.0 44 5410.5 45 5665.5 46 5766.0 47 5720.5 48 5551.0 49 5224.5 50 5022.0 51 4767.0 52 4273.0 53 3905.0 54 3776.0 55 3573.0 56 3289.0 57 3169.5 58 3131.0 59 3105.0 60 3024.0 61 2930.5 62 2892.0 63 2888.5 64 2836.0 65 2710.5 66 2622.5 67 2611.0 68 2567.5 69 2398.0 70 2219.0 71 2166.0 72 2048.5 73 1824.5 74 1590.5 75 1463.0 76 1342.5 77 1068.0 78 780.0 79 646.0 80 553.0 81 386.0 82 253.5 83 195.0 84 156.0 85 88.5 86 43.5 87 27.0 88 19.5 89 9.5 90 4.0 91 1.5 92 2.0 93 1.5 94 2.0 95 2.0 96 1.0 97 0.5 98 0.0 99 2.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0017207261464337949 4 0.0 5 0.0 6 0.0 7 0.0 8 0.005162178439301385 9 0.005162178439301385 10-11 0.007313086122343629 12-13 0.005592359975909835 14-15 0.005592359975909835 16-17 0.009894175341994322 18-19 0.0068829045857351796 20-21 0.0047319969026929365 22-23 0.007313086122343629 24-25 0.006022541512518282 26-27 0.005162178439301385 28-29 0.0047319969026929365 30-31 0.006452723049126731 32-33 0.005592359975909835 34-35 0.005162178439301385 36-37 0.008603630732168976 38-39 0.007743267658952078 40-41 0.007313086122343629 42-43 0.005162178439301385 44-45 0.007313086122343629 46-47 0.006022541512518282 48-49 0.007313086122343629 50-51 0.005162178439301385 52-53 0.006022541512518282 54-55 0.007743267658952078 56-57 0.005162178439301385 58-59 0.006452723049126731 60-61 0.008173449195560527 62-63 0.008173449195560527 64-65 0.005592359975909835 66-67 0.009463993805385873 68-69 0.029682526025982967 70-71 0.008603630732168976 72-73 0.006452723049126731 74-75 0.005162178439301385 76 0.0068829045857351796 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 116230.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 95.90983874817812 #Duplication Level Percentage of deduplicated Percentage of total 1 96.9157792356234 92.9517675864267 2 2.355739213084034 4.518771361192994 3 0.4855320834970248 1.3970191150579978 4 0.13897980380576236 0.533181222890564 5 0.05498438167101815 0.26367715898678157 6 0.024992513345519624 0.14382167549282862 7 0.01299608442575081 0.08725166531420282 8 0.0049984930422345055 0.038352372933168136 9 0.0 0.0 >10 0.00599819150524949 0.06615784170476684 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0025810892196506926 0.0 2 0.0 0.0 0.0 0.0025810892196506926 0.0 3 0.0 0.0 0.0 0.0025810892196506926 0.0 4 0.0 0.0 0.0 0.01032435687860277 0.0 5 0.0 0.0 0.0 0.01032435687860277 0.0 6 0.0 0.0 0.0 0.01032435687860277 0.0 7 0.0 0.0 0.0 0.01032435687860277 0.0 8 0.0 0.0 0.0 0.01032435687860277 0.0 9 0.0 0.0 0.0 0.011184719951819667 0.0 10 0.0 0.0 0.0 0.012905446098253464 0.0 11 0.0 0.0 0.0 0.01376580917147036 0.0 12 0.0 0.0 0.0 0.01376580917147036 0.0 13 0.0 0.0 0.0 0.016346898391121054 0.0 14 0.0 0.0 0.0 0.018927987610771746 0.0 15 0.0 0.0 0.0 0.018927987610771746 0.0 16 0.0 0.0 0.0 0.018927987610771746 0.0 17 0.0 0.0 0.0 0.021509076830422438 0.0 18 0.0 0.0 0.0 0.021509076830422438 0.0 19 0.0 0.0 0.0 0.026671255269723824 8.603630732168976E-4 20 0.0 0.0 0.0 0.029252344489374516 8.603630732168976E-4 21 0.0 0.0 0.0 0.029252344489374516 8.603630732168976E-4 22 0.0 0.0 0.0 0.04559924288049557 8.603630732168976E-4 23 0.0 0.0 0.0 0.04990105824658006 8.603630732168976E-4 24 0.0 0.0 0.0 0.05592359975909834 8.603630732168976E-4 25 0.0 0.0 0.0 0.06108577819839973 8.603630732168976E-4 26 0.0 0.0 0.0 0.06280650434483352 8.603630732168976E-4 27 0.0 0.0 0.0 0.11528865181106426 8.603630732168976E-4 28 0.0 0.0 0.0 0.1755140669362471 8.603630732168976E-4 29 0.0 0.0 0.0 0.21164931601135678 8.603630732168976E-4 30 0.0 0.0 0.0 0.2839198141615762 8.603630732168976E-4 31 0.0 0.0 0.0 0.3062892540652155 8.603630732168976E-4 32 0.0 0.0 0.0 0.3716768476296997 8.603630732168976E-4 33 0.0 0.0 0.0 0.4319022627548826 8.603630732168976E-4 34 0.0 0.0 0.0 0.5394476469069948 0.001720726146433795 35 0.0 0.0 0.0 0.7648627720898219 0.001720726146433795 36 0.0 0.0 0.0 0.9162866729759959 0.001720726146433795 37 0.0 0.0 0.0 1.343887120364794 0.001720726146433795 38 0.0 0.0 0.0 1.7009377957498064 0.001720726146433795 39 0.0 0.0 0.0 2.1724167598726662 0.001720726146433795 40 0.0 0.0 0.0 2.6748687946313345 0.001720726146433795 41 0.0 0.0 0.0 3.23066333992945 0.001720726146433795 42 0.0 0.0 0.0 3.7073044824916113 0.001720726146433795 43 0.0 0.0 0.0 4.220080874128882 0.001720726146433795 44 0.0 0.0 0.0 4.793943043964553 0.001720726146433795 45 0.0 0.0 0.0 5.165619891594253 0.001720726146433795 46 0.0 0.0 0.0 5.591499612836617 0.001720726146433795 47 0.0 0.0 0.0 6.085348016863116 0.001720726146433795 48 0.0 0.0 0.0 6.438096876882044 0.001720726146433795 49 0.0 0.0 0.0 6.817516992170696 0.001720726146433795 50 0.0 0.0 0.0 7.281252688634604 0.001720726146433795 51 0.0 0.0 0.0 7.7613352834896325 0.001720726146433795 52 0.0 0.0 0.0 8.17258883248731 0.001720726146433795 53 0.0 0.0 0.0 8.761077174567667 0.001720726146433795 54 0.0 0.0 0.0 9.22911468639766 0.001720726146433795 55 0.0 0.0 0.0 9.544867934268261 0.001720726146433795 56 0.0 0.0 0.0 9.919986234190828 0.001720726146433795 57 0.0 0.0 0.0 10.246924202013249 0.001720726146433795 58 0.0 0.0 0.0 10.520519659296223 0.001720726146433795 59 0.0 0.0 0.0 10.827669276434655 0.001720726146433795 60 0.0 0.0 0.0 11.018669878688806 0.001720726146433795 61 0.0 0.0 0.0 11.232900283919815 0.001720726146433795 62 0.0 0.0 0.0 11.38948636324529 0.001720726146433795 63 0.0 0.0 0.0 11.604577131549513 0.001720726146433795 64 0.0 0.0 0.0 11.823969715219823 0.001720726146433795 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGAAT 15 0.002219861 70.00001 20 TTACGCG 15 0.002219861 70.00001 14 ATTCGTG 20 7.8987105E-5 70.0 32 ACGAGAG 20 7.8987105E-5 70.0 24 ATCTAGG 40 1.05592335E-8 61.25 42 ATTTCGG 30 8.332978E-6 58.333336 42 CGGTGTT 55 3.45608E-11 57.272724 46 TTCGTGT 50 9.695214E-10 56.000004 33 TCTAGGT 50 9.695214E-10 56.000004 43 TAGATCT 150 0.0 53.666668 39 GTAGATC 125 0.0 53.200005 38 GGCCAGT 20 0.0069364007 52.5 11 GATCTAG 40 7.4257514E-7 52.5 41 ATCGGTG 20 0.0069364007 52.5 44 TCCGGTT 20 0.0069364007 52.5 44 TCACGTG 20 0.0069364007 52.5 44 CGTGTAT 55 2.2573658E-9 50.90909 35 GCCATAG 35 2.0758001E-5 50.0 1 ATCTGGC 35 2.0758001E-5 50.0 12 CGTATCA 85 0.0 49.411766 56 >>END_MODULE