##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779768_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 116230 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.6332702400413 34.0 34.0 34.0 34.0 34.0 2 33.645754108233675 34.0 34.0 34.0 34.0 34.0 3 33.65582035619031 34.0 34.0 34.0 34.0 34.0 4 33.69550890475781 34.0 34.0 34.0 34.0 34.0 5 33.70266712552697 34.0 34.0 34.0 34.0 34.0 6 37.35819495827239 38.0 38.0 38.0 37.0 38.0 7 37.35004731996903 38.0 38.0 38.0 37.0 38.0 8 37.21945280908543 38.0 38.0 38.0 36.0 38.0 9 37.2516992170696 38.0 38.0 38.0 36.0 38.0 10-11 37.14874817172847 38.0 38.0 38.0 36.0 38.0 12-13 37.14157704551321 38.0 38.0 38.0 36.0 38.0 14-15 37.15031403252172 38.0 38.0 38.0 36.0 38.0 16-17 37.07446872580229 38.0 38.0 38.0 35.5 38.0 18-19 37.057003355415986 38.0 38.0 38.0 35.0 38.0 20-21 37.10853049987095 38.0 38.0 38.0 36.0 38.0 22-23 37.076206659210186 38.0 38.0 38.0 35.5 38.0 24-25 37.02642605179386 38.0 38.0 38.0 35.0 38.0 26-27 36.9728813559322 38.0 38.0 38.0 35.0 38.0 28-29 36.86987438699131 38.0 37.5 38.0 34.5 38.0 30-31 36.658595027101434 38.0 37.0 38.0 34.0 38.0 32-33 36.679303966273764 38.0 37.0 38.0 34.0 38.0 34-35 36.49217499784909 38.0 37.0 38.0 34.0 38.0 36-37 36.53306375290373 38.0 37.0 38.0 34.0 38.0 38-39 35.85628925406522 38.0 37.0 38.0 32.5 38.0 40-41 36.58148498666437 38.0 37.0 38.0 34.0 38.0 42-43 36.87157360406091 38.0 37.0 38.0 35.0 38.0 44-45 36.861993461240644 38.0 37.0 38.0 35.0 38.0 46-47 36.87936419168889 38.0 37.5 38.0 35.0 38.0 48-49 36.84809429579282 38.0 37.0 38.0 34.5 38.0 50-51 36.738806676417454 38.0 37.0 38.0 34.0 38.0 52-53 36.73080529983653 38.0 37.0 38.0 34.0 38.0 54-55 36.73882818549428 38.0 37.0 38.0 34.0 38.0 56-57 36.74900197883507 38.0 37.0 38.0 34.0 38.0 58-59 36.63180332100146 38.0 37.0 38.0 34.0 38.0 60-61 36.66737073044825 38.0 37.0 38.0 34.0 38.0 62-63 36.723384668330034 38.0 37.0 38.0 34.0 38.0 64-65 36.75731738793771 38.0 37.0 38.0 34.5 38.0 66-67 36.65830250365654 38.0 37.0 38.0 34.0 38.0 68-69 36.36350339843414 38.0 37.0 38.0 34.0 38.0 70-71 34.46623074937624 38.0 34.0 38.0 26.5 38.0 72-73 31.290875849608533 38.0 24.0 38.0 11.0 38.0 74-75 30.91050933493934 38.0 23.5 38.0 11.0 38.0 76 30.601488428116664 37.0 24.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 0.0 20 2.0 21 8.0 22 7.0 23 22.0 24 39.0 25 97.0 26 134.0 27 286.0 28 491.0 29 790.0 30 1346.0 31 1976.0 32 3130.0 33 4915.0 34 8730.0 35 19007.0 36 21704.0 37 53545.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.579024348274974 13.548137313946484 11.229458831626946 44.6433795061516 2 16.574034242450313 12.948464251914308 47.52903725372107 22.94846425191431 3 15.928761937537642 15.406521552094985 44.743181622644755 23.921534887722622 4 12.441710401789555 33.182483007829305 28.342080357911037 26.0337262324701 5 12.871031575324787 26.990449969887294 46.475092489030374 13.66342596575755 6 24.651983136883764 46.95173363159253 13.770971349909662 14.625311881614042 7 22.708422954486792 22.54237288135593 15.888324873096446 38.860879291060826 8 19.660156586079324 46.46390776907855 13.174739740170352 20.70119590467177 9 18.326593822593136 14.24589176632539 13.257334595199174 54.1701798158823 10-11 21.263873354555624 29.302675729157706 27.580228856577477 21.8532220597092 12-13 20.4633055149273 14.449367633141186 30.154004990105825 34.93332186182569 14-15 19.80813903467263 14.488944334509164 16.888927127247698 48.813989503570504 16-17 33.26292695517508 27.188333476727177 14.685107115202614 24.86363245289512 18-19 33.90432762625828 18.44962574206315 14.809429579282456 32.83661705239611 20-21 20.767013679772862 16.124924718231092 14.974619289340103 48.13344231265594 22-23 20.949840832831455 28.678482319538844 14.914393874214918 35.457282973414785 24-25 33.105910694313 28.769250623763227 14.842983739137916 23.281854942785856 26-27 33.29476038888411 30.625483954228685 15.699475178525338 20.38028047836187 28-29 20.691301729329776 18.795491697496345 27.78886690183257 32.724339671341305 30-31 19.831799019186096 27.85081304310419 19.574550460294244 32.74283747741547 32-33 19.310849178353266 17.727350942097566 40.19616278069345 22.765637098855716 34-35 32.25157016260862 27.93857007657231 20.616880323496513 19.19297943732255 36-37 20.653445754108233 42.74972038200121 16.593392411597694 20.003441452292865 38-39 18.95164759528521 19.43431127935989 29.513034500559236 32.101006624795666 40-41 19.186526714273423 15.080013765809172 31.39765981244085 34.33579970747655 42-43 31.728469414092746 14.884711348188937 30.55923599759098 22.827583240127332 44-45 19.155983825174225 27.59829648111503 32.510539447646906 20.735180246063837 46-47 30.854340531704377 16.171384324184807 21.352060569560354 31.622214574550462 48-49 30.20734750064527 14.896326249677363 18.825174223522325 36.07115202615504 50-51 19.441194183945626 15.501161490148844 31.740944678654394 33.31669964725114 52-53 16.58091714703605 15.51578766239353 44.18824744041986 23.715047750150564 54-55 16.656629097479136 15.360922309214489 34.12974275144111 33.852705841865266 56-57 29.066936247096276 15.602684332788435 21.804181364535836 33.52619805557946 58-59 18.316699647251138 16.412716166222147 41.81192463219479 23.45865955433193 60-61 29.283747741546932 28.81614041125355 20.677105738621698 21.22300610857782 62-63 17.297169405489115 45.18110642691215 16.22257592704121 21.299148240557518 64-65 16.215693022455476 46.70308870343285 15.76572313516304 21.315495138948638 66-67 16.305170782070032 46.806332272218874 15.373397573776135 21.515099371934955 68-69 16.241073733115375 47.14574550460294 15.352318678482318 21.260862083799363 70-71 16.59253204852448 44.62014970317474 16.349909661877312 22.437408586423473 72-73 16.922911468639764 37.520003441452296 18.965843585993287 26.591241503914652 74-75 17.4541856663512 34.6179987954917 20.74550460294244 27.18231093521466 76 17.59528521035877 35.55106254839542 19.91998623419083 26.93366600705498 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 0.5 16 1.0 17 2.0 18 2.0 19 6.0 20 15.5 21 21.0 22 27.0 23 46.5 24 71.0 25 82.0 26 123.5 27 160.0 28 255.5 29 356.0 30 387.5 31 449.5 32 623.0 33 766.0 34 921.5 35 1177.0 36 1577.5 37 1878.0 38 6681.0 39 12593.5 40 12214.5 41 9124.0 42 7522.0 43 6303.0 44 4616.0 45 3907.0 46 3666.0 47 3537.0 48 3287.5 49 3021.5 50 2876.0 51 2618.5 52 2200.0 53 2001.0 54 1963.0 55 1880.5 56 1810.5 57 1794.5 58 1766.0 59 1825.5 60 1879.0 61 1918.5 62 1964.0 63 2002.5 64 2030.0 65 2097.5 66 2156.5 67 2137.0 68 2182.0 69 2173.5 70 2052.5 71 1985.0 72 1928.0 73 1943.0 74 1882.5 75 1750.0 76 1629.0 77 1405.5 78 1170.0 79 1037.0 80 883.5 81 639.0 82 435.0 83 322.0 84 265.0 85 156.0 86 78.0 87 52.0 88 38.0 89 16.5 90 6.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 116230.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.689753075797988 #Duplication Level Percentage of deduplicated Percentage of total 1 47.84568186137431 15.162178439301385 2 24.29071756305487 15.395336832143164 3 13.205549371487525 12.554417964380967 4 6.323134146010371 8.015142390088617 5 3.089620720549507 4.895465886604147 6 1.6371188879537373 3.1127935988987354 7 0.9529498004506828 2.1139120708939174 8 0.6000054299133929 1.521121913447475 9 0.4724024651806803 1.3473285726576614 >10 1.523090706703228 6.876021681149445 >50 0.01628974017864415 0.3888841090940377 >100 0.027149566964406915 1.7723479308268089 >500 0.008144870089322074 1.9297943732255012 >1k 0.005429913392881383 4.069517336315926 >5k 0.0 0.0 >10k+ 0.0027149566964406917 20.845736900972213 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 24229 20.845736900972213 No Hit TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 2944 2.5329088875505463 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 1786 1.5366084487653788 No Hit ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT 967 0.8319710918007398 TruSeq Adapter, Index 12 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 693 0.59623160973931 No Hit CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 583 0.5015916716854513 TruSeq Adapter, Index 12 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGT 355 0.3054288909919986 No Hit CTTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 349 0.30026671255269727 RNA PCR Primer, Index 12 (95% over 21bp) CTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 249 0.2142304052310075 No Hit TTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 213 0.1832573345951992 TruSeq Adapter, Index 12 (95% over 21bp) CTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 182 0.15658607932547533 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 182 0.15658607932547533 No Hit TATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCT 173 0.14884281166652327 RNA PCR Primer, Index 12 (95% over 22bp) TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCG 124 0.1066850210788953 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAGCTCGTATGCCGT 118 0.10152284263959391 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0025810892196506926 0.0 2 0.0 0.0 0.0 0.0025810892196506926 0.0 3 0.0 0.0 0.0 0.0025810892196506926 0.0 4 0.0 0.0 0.0 0.01032435687860277 0.0 5 0.0 0.0 0.0 0.01376580917147036 0.0 6 0.0 0.0 0.0 0.01376580917147036 0.0 7 0.0 0.0 0.0 0.01376580917147036 0.0 8 0.0 0.0 0.0 0.01376580917147036 0.0 9 0.0 0.0 0.0 0.014626172244687258 0.0 10 0.0 0.0 0.0 0.016346898391121054 0.0 11 0.0 0.0 0.0 0.01806762453755485 0.0 12 0.0 0.0 0.0 0.01806762453755485 0.0 13 0.0 0.0 0.0 0.021509076830422438 0.0 14 0.0 0.0 0.0 0.02753161834294072 0.0 15 0.0 0.0 0.0 0.029252344489374516 0.0 16 0.0 0.0 0.0 0.029252344489374516 0.0 17 0.0 0.0 0.0 0.033554159855459 0.0 18 0.0 0.0 0.0 0.03699561214832659 0.0 19 0.0 0.0 0.0 0.04129742751441108 0.0 20 0.0 0.0 0.0 0.046459605953712464 0.0 21 0.0 0.0 0.0 0.047319969026929365 0.0 22 0.0 0.0 0.0 0.05592359975909834 0.0 23 0.0 0.0 0.0 0.06022541512518283 0.0 24 0.0 0.0 0.0 0.06366686741805042 0.0 25 0.0 0.0 0.0 0.0688290458573518 0.0 26 0.0 0.0 0.0 0.0722704981502194 0.0 27 0.0 0.0 0.0 0.14368063322722188 0.0 28 0.0 0.0 0.0 0.22283403596317647 0.0 29 0.0 0.0 0.0 0.29940634947948036 0.0 30 0.0 0.0 0.0 0.3828615675815194 0.0 31 0.0 0.0 0.0 0.4654564226103416 0.0 32 0.0 0.0 0.0 0.5764432590553213 0.0 33 0.0 0.0 0.0 0.7115202615503743 0.0 34 0.0 0.0 0.0 0.9403768390260691 0.0 35 0.0 0.0 0.0 1.2784995268003096 0.0 36 0.0 0.0 0.0 1.7181450572141443 0.0 37 0.0 0.0 0.0 2.3556740944678656 0.0 38 0.0 0.0 0.0 2.9794373225501163 0.0 39 0.0 0.0 0.0 3.6668674180504173 0.0 40 0.0 0.0 0.0 4.403338208724081 0.0 41 0.0 0.0 0.0 5.188849694571109 0.0 42 0.0 0.0 0.0 5.853049987094554 0.0 43 0.0 0.0 0.0 6.563709885571711 0.0 44 0.0 0.0 0.0 7.313086122343629 0.0 45 0.0 0.0 0.0 8.030628925406521 0.0 46 0.0 0.0 0.0 8.729243740858642 0.0 47 0.0 0.0 0.0 9.402908027187474 0.0 48 0.0 0.0 0.0 10.054202873612665 0.0 49 0.0 0.0 0.0 10.752817689064786 0.0 50 0.0 0.0 0.0 11.3034500559236 0.0 51 0.0 0.0 0.0 11.856663512002065 0.0 52 0.0 0.0 0.0 12.435687860277037 0.0 53 0.0 0.0 0.0 13.056869999139638 0.0 54 0.0 0.0 0.0 13.567065301557257 0.0 55 0.0 0.0 0.0 14.069517336315926 0.0 56 0.0 0.0 0.0 14.593478447905015 0.0 57 0.0 0.0 0.0 15.129484642519143 0.0 58 0.0 0.0 0.0 15.618170868106342 0.0 59 0.0 0.0 0.0 16.052654220080875 0.0 60 0.0 0.0 0.0 16.480254667469673 0.0 61 0.0 0.0 0.0 16.931084917835328 0.0 62 0.0 0.0 0.0 17.392239525079585 0.0 63 0.0 0.0 0.0 17.86543921534888 0.0 64 0.0 0.0 0.0 18.340359631764606 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGAAAGC 25 2.8249415E-6 70.00001 33 ATCGTAT 15 0.002219861 70.00001 39 GAAAGCT 25 2.8249415E-6 70.00001 34 TTGAAAG 25 2.8249415E-6 70.00001 32 CTTGTGT 20 7.8987105E-5 70.0 67 AAGGGTC 20 7.8987105E-5 70.0 33 TCTTTAT 110 0.0 60.454544 1 CTTTATA 115 0.0 57.826084 2 AGGGTCA 25 2.3820717E-4 56.000004 34 GTAATCA 25 2.3820717E-4 56.000004 52 CTAGTGT 25 2.3820717E-4 56.000004 4 CAAGGGT 25 2.3820717E-4 56.000004 32 GGAGTAA 25 2.3820717E-4 56.000004 49 AGGTGTT 25 2.3820717E-4 56.000004 60 AGTAATC 25 2.3820717E-4 56.000004 51 GATCCGA 20 0.0069364007 52.5 11 GGGACAC 20 0.0069364007 52.5 49 TTTATAC 140 0.0 52.5 3 AACCTAT 20 0.0069364007 52.5 70 TATCGTA 20 0.0069364007 52.5 38 >>END_MODULE