##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779766_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 34305 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.071738813584027 33.0 23.0 34.0 12.0 34.0 2 26.988689695379684 32.0 23.0 34.0 12.0 34.0 3 26.237574697565954 32.0 21.0 34.0 11.0 34.0 4 28.00431423990672 33.0 23.0 34.0 12.0 34.0 5 27.69733275032794 33.0 23.0 34.0 11.0 34.0 6 29.84392945634747 36.0 23.0 38.0 11.0 38.0 7 30.890803089928582 36.0 26.0 38.0 12.0 38.0 8 30.181314677160763 36.0 25.0 38.0 11.0 38.0 9 31.630287130155953 37.0 27.0 38.0 12.0 38.0 10-11 31.111397755429238 37.0 26.0 38.0 11.0 38.0 12-13 30.408599329543797 35.5 24.5 38.0 11.0 38.0 14-15 30.211849584608657 35.0 24.5 38.0 11.0 38.0 16-17 30.031555166885294 35.5 24.0 38.0 11.0 38.0 18-19 30.46449497157849 36.0 25.0 38.0 11.0 38.0 20-21 29.530607783121994 35.0 23.5 38.0 11.0 38.0 22-23 29.55593936743915 35.5 23.5 38.0 11.0 38.0 24-25 30.59245008016324 36.5 24.5 38.0 11.0 38.0 26-27 29.137662148374872 35.0 22.0 38.0 11.0 38.0 28-29 31.012971869989798 37.0 26.0 38.0 11.0 38.0 30-31 31.51257834134966 37.0 26.5 38.0 11.0 38.0 32-33 31.64241364232619 37.0 27.0 38.0 11.0 38.0 34-35 31.682130884710684 38.0 27.0 38.0 11.0 38.0 36-37 29.873648156245444 35.0 24.0 38.0 11.0 38.0 38-39 28.38944760239032 34.0 21.0 37.5 11.0 38.0 40-41 29.24703396006413 34.0 22.0 37.5 11.0 38.0 42-43 30.24910362920857 35.5 24.5 38.0 11.0 38.0 44-45 31.68902492348054 37.0 27.0 38.0 11.0 38.0 46-47 30.41001311762134 36.0 24.5 38.0 11.0 38.0 48-49 29.65091094592625 35.5 23.5 38.0 11.0 38.0 50-51 27.863853665646406 33.0 21.0 37.5 11.0 38.0 52-53 30.782947092260603 36.5 25.5 38.0 11.0 38.0 54-55 30.055268911237427 35.5 24.0 38.0 11.0 38.0 56-57 30.41826264392946 36.0 24.5 38.0 11.0 38.0 58-59 31.363620463489287 37.0 26.5 38.0 11.0 38.0 60-61 31.861434193266287 38.0 27.0 38.0 11.0 38.0 62-63 31.775134819997085 38.0 27.5 38.0 11.0 38.0 64-65 31.48517708788806 37.5 27.0 38.0 11.0 38.0 66-67 29.850794344847692 36.0 23.5 38.0 11.0 38.0 68-69 29.740139921294272 35.5 23.5 38.0 11.0 38.0 70-71 29.289287275907302 35.0 22.0 38.0 11.0 38.0 72-73 28.277029587523685 34.0 21.0 37.5 11.0 38.0 74-75 29.90212796968372 35.5 23.5 38.0 11.0 38.0 76 30.355079434484768 36.0 24.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 19.0 13 107.0 14 305.0 15 507.0 16 783.0 17 1141.0 18 1365.0 19 1394.0 20 1218.0 21 889.0 22 686.0 23 511.0 24 466.0 25 493.0 26 450.0 27 499.0 28 584.0 29 730.0 30 908.0 31 1184.0 32 1692.0 33 2404.0 34 3408.0 35 4664.0 36 5283.0 37 2613.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.28640139921294 18.038186853228392 13.86095321381723 32.81445853374144 2 20.282757615507943 15.432152747412914 41.4954088325317 22.78968080454744 3 18.571636787640287 17.14327357528057 38.72030316280426 25.564786474274886 4 13.866783267745229 20.384783559247925 30.12971869989797 35.618714473108874 5 15.10275470048098 25.870864305494827 40.387698586211926 18.638682407812272 6 25.39279988339892 34.19909634164116 16.283340620900745 24.124763154059174 7 24.766069086139048 24.79521935577904 19.393674391488123 31.045037166593794 8 21.69654569304766 33.55196035563329 16.528202885876695 28.223291065442357 9 21.069814895787786 16.507797697128698 18.854394403148227 43.567993003935285 10-11 23.315843171549336 23.89301851042122 26.567555749890687 26.223582568138752 12-13 22.281008599329542 18.412767818102317 30.221542049263956 29.084681533304185 14-15 24.09269785745518 22.221250546567557 22.579798863139484 31.10625273283778 16-17 26.363503862410724 20.787057280279843 24.39877568867512 28.45066316863431 18-19 21.25200408103775 21.183500947383763 27.85162512753243 29.712869844046057 20-21 25.796531117912842 20.69523393091386 25.515231015886897 27.993003935286403 22-23 26.88675120244862 19.877568867512025 24.919108001749017 28.316571928290337 24-25 21.823349365981635 24.063547587815187 22.576883836175483 31.536219210027696 26-27 24.4978866054511 23.14677160763737 25.61725695962688 26.738084827284652 28-29 23.024340475149398 23.60588835446728 24.895787786037022 28.473983384346308 30-31 22.69494242821746 23.04620317737939 25.566243987756888 28.692610406646263 32-33 22.543361026089492 23.165719282903368 25.847544089782833 28.443375601224314 34-35 22.935432152747413 23.212359714327356 25.29223145314094 28.559976679784288 36-37 25.980177816644805 19.54671330709809 29.793033085556043 24.680075790701064 38-39 25.233930913860952 18.61827721906428 33.67584900160326 22.471942865471505 40-41 23.94111645532721 23.216732254773355 24.174318612447166 28.667832677452264 42-43 20.253607345867948 24.180148666375164 26.171112082786767 29.395131904970125 44-45 20.39498615362192 21.46042850896371 28.68532283923626 29.459262498178106 46-47 25.24850604868095 20.049555458387992 27.24675703250255 27.455181460428506 48-49 25.025506485934994 20.94884127678181 28.306369333916336 25.719282903366857 50-51 29.683719574406066 18.581839382014284 28.466695816936305 23.267745226643346 52-53 20.142836321235972 22.367001894767526 28.232036146334355 29.258125637662147 54-55 23.80411018801924 21.020259437399798 26.573385803818685 28.60224457076228 56-57 24.19472380119516 21.454598455035708 25.96851770878881 28.382160034980323 58-59 20.7071958489411 23.231645993965806 27.355011733154544 28.70614642393855 60-61 20.217169508817957 22.059466550065586 27.428946217752515 30.294417723363942 62-63 20.094738376329982 23.11324879755138 27.019384929310597 29.772627896808046 64-65 20.583005392799883 24.212213962979156 26.268765486080746 28.93601515814021 66-67 19.226060341058155 27.054365252878586 22.127969683719577 31.591604722343682 68-69 19.415126246428365 26.919937022566913 22.291387252901043 31.37354947810368 70-71 19.69829470922606 27.60676286255648 21.307389593353737 31.387552834863726 72-73 19.89505902929602 27.923043288150417 20.577175338871882 31.60472234368168 74-75 21.40650051012972 25.44527036875091 23.40912403439732 29.739105086722052 76 23.127823932371374 23.10158868969538 24.296749744935138 29.473837632998105 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 1.5 16 2.5 17 2.0 18 2.5 19 3.0 20 8.0 21 13.0 22 13.5 23 19.5 24 31.5 25 38.0 26 44.5 27 67.0 28 99.5 29 116.0 30 149.5 31 218.5 32 294.0 33 334.0 34 409.0 35 547.0 36 685.5 37 761.0 38 894.5 39 1114.5 40 1320.0 41 1535.0 42 1631.0 43 1706.5 44 1808.0 45 1856.0 46 1878.0 47 1922.0 48 1842.5 49 1660.0 50 1601.0 51 1538.5 52 1357.0 53 1199.0 54 1160.0 55 1064.0 56 892.0 57 775.5 58 735.0 59 719.5 60 681.5 61 643.5 62 628.0 63 641.0 64 682.5 65 693.0 66 673.0 67 671.0 68 671.0 69 644.0 70 601.0 71 585.0 72 573.5 73 487.5 74 400.0 75 387.0 76 335.5 77 252.5 78 184.5 79 148.0 80 137.0 81 95.0 82 51.0 83 38.0 84 26.0 85 12.5 86 8.5 87 6.0 88 5.0 89 2.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0014575134819997085 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.02040518874799592 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 34305.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 98.22183355196036 #Duplication Level Percentage of deduplicated Percentage of total 1 98.4804867190978 96.72933974639265 2 1.3058317257753376 2.565223728319487 3 0.15135776821486868 0.44599912549191084 4 0.05045258940495623 0.19822183355196035 5 0.008903398130286393 0.043725404459991256 6 0.0029677993767621307 0.0174901617839965 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.002915026963999417 0.0 6 0.0 0.0 0.0 0.002915026963999417 0.0 7 0.0 0.0 0.0 0.002915026963999417 0.0 8 0.0 0.0 0.0 0.005830053927998834 0.0 9 0.0 0.0 0.0 0.00874508089199825 0.0 10 0.0 0.0 0.0 0.00874508089199825 0.0 11 0.0 0.0 0.0 0.014575134819997084 0.0 12 0.0 0.0 0.0 0.014575134819997084 0.0 13 0.0 0.0 0.0 0.014575134819997084 0.0 14 0.0 0.0 0.0 0.014575134819997084 0.0 15 0.0 0.0 0.0 0.014575134819997084 0.0 16 0.0 0.0 0.0 0.014575134819997084 0.0 17 0.0 0.0 0.0 0.014575134819997084 0.0 18 0.0 0.0 0.0 0.014575134819997084 0.0 19 0.0 0.0 0.0 0.0174901617839965 0.0 20 0.0 0.0 0.0 0.02040518874799592 0.0 21 0.0 0.0 0.0 0.026235242675994752 0.0 22 0.0 0.0 0.0 0.04664043142399067 0.0 23 0.0 0.0 0.0 0.052470485351989504 0.0 24 0.0 0.0 0.0 0.06121556624398776 0.0 25 0.0 0.0 0.0 0.06121556624398776 0.0 26 0.0 0.0 0.0 0.06121556624398776 0.0 27 0.0 0.0 0.0 0.07870572802798426 0.0 28 0.0 0.0 0.0 0.12534615945197494 0.0 29 0.0 0.0 0.0 0.1370062673079726 0.0 30 0.0 0.0 0.0 0.16324150998396736 0.0 31 0.0 0.0 0.0 0.18073167176796384 0.0 32 0.0 0.0 0.0 0.20113686051595978 0.0 33 0.0 0.0 0.0 0.22737210319195453 0.0 34 0.0 0.0 0.0 0.2565223728319487 0.0 35 0.0 0.0 0.0 0.32065296603993587 0.0 36 0.0 0.0 0.0 0.3731234513919254 0.0 37 0.0 0.0 0.0 0.5626002040518875 0.0 38 0.0 0.0 0.0 0.7316717679638537 0.0 39 0.0 0.0 0.0 0.9036583588398193 0.0 40 0.0 0.0 0.0 1.1135403002477773 0.0 41 0.0 0.0 0.0 1.3729777000437253 0.0 42 0.0 0.0 0.0 1.6936306660836613 0.0 43 0.0 0.0 0.0 1.9384929310596124 0.0 44 0.0 0.0 0.0 2.215420492639557 0.0 45 0.0 0.0 0.0 2.439877568867512 0.0 46 0.0 0.0 0.0 2.6963999416994606 0.0 47 0.0 0.0 0.0 3.0112228538113976 0.0 48 0.0 0.0 0.0 3.244425010931351 0.0 49 0.0 0.0 0.0 3.4688820871593062 0.0 50 0.0 0.0 0.0 3.7866200262352425 0.0 51 0.0 0.0 0.0 4.095612884419181 0.0 52 0.0 0.0 0.0 4.384200553855123 0.0 53 0.0 0.0 0.0 4.754408978283049 0.0 54 0.0 0.0 0.0 5.060486809502988 0.0 55 0.0 0.0 0.0 5.293688966622941 0.0 56 0.0 0.0 0.0 5.623087013554875 0.0 57 0.0 0.0 0.0 5.882524413350824 0.0 58 0.0 0.0 0.0 6.104066462614779 0.0 59 0.0 0.0 0.0 6.343098673662731 0.0 60 0.0 0.0 0.0 6.4975951027547 0.0 61 0.0 0.0 0.0 6.6491765048826705 0.0 62 0.0 0.0 0.0 6.7716076373706455 0.0 63 0.0 0.0 0.0 6.923189039498616 0.0 64 0.0 0.0 0.0 7.109750765194578 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCTCGG 15 0.0022064976 70.0 42 AGATCTC 30 9.949508E-8 70.0 40 GTTCGCC 20 7.819644E-5 70.0 50 TCTCGGT 20 7.819644E-5 70.0 43 CGTGTAT 20 7.819644E-5 70.0 35 ACATCTT 15 0.0022064976 70.0 8 ATCTCTG 25 2.3583703E-4 55.999996 42 TGGTTGC 25 2.3583703E-4 55.999996 49 TATCTCT 25 2.3583703E-4 55.999996 41 GCCGTAT 25 2.3583703E-4 55.999996 54 TATCATT 20 0.0068949624 52.5 58 GTGTTCG 20 0.0068949624 52.5 48 GTAGATC 20 0.0068949624 52.5 38 TCTGTGG 20 0.0068949624 52.5 45 TATTATC 20 0.0068949624 52.5 34 GTGTATA 40 7.271774E-7 52.5 36 CGGTGGT 40 7.271774E-7 52.5 46 TAGATCT 40 7.271774E-7 52.5 39 CGCAACC 20 0.0068949624 52.5 40 AAGTGTA 20 0.0068949624 52.5 34 >>END_MODULE