SRR1779766_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779766_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34305
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	4085	11.90788514793762	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	664	1.9355779040956127	RNA PCR Primer, Index 48 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	548	1.5974347762716805	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	349	1.0173444104357965	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	317	0.9240635475878152	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	254	0.7404168488558519	RNA PCR Primer, Index 48 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	208	0.6063256085118788	No Hit
TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	125	0.3643783704999271	No Hit
TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT	123	0.3585483165719283	RNA PCR Primer, Index 48 (95% over 22bp)
CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	109	0.31773793907593645	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	106	0.3089928581839382	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	102	0.2973327503279405	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT	80	0.23320215711995335	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	58	0.16907156391196618	No Hit
TCTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	45	0.13117621337997376	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT	42	0.1224311324879755	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCCTT	15	0.0022064976	70.0	42
GTAATCG	15	0.0022064976	70.0	36
CTAGTGG	15	0.0022064976	70.0	4
CTATACA	40	7.271774E-7	52.5	1
TTTCCTA	20	0.0068949624	52.5	48
TTACAAA	20	0.0068949624	52.5	29
CTTGAAA	720	0.0	44.236115	57
AATCTCG	670	0.0	43.8806	36
TTGAAAA	720	0.0	43.750004	58
CGTCTTC	730	0.0	43.630135	48
GTCTTCT	730	0.0	43.630135	49
TATGCCG	740	0.0	43.513515	43
ATGCCGT	740	0.0	43.513515	44
CTGCTTG	725	0.0	43.448277	54
TCTTCTG	725	0.0	43.448277	50
CCGTCTT	735	0.0	43.333336	47
GCCGTCT	735	0.0	43.333336	46
TCTCGTA	695	0.0	43.309353	38
TGCCGTC	745	0.0	43.221474	45
CTCGTAT	730	0.0	43.150684	39