##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779766_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 34305 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.34292377204489 34.0 34.0 34.0 33.0 34.0 2 33.37283194869553 34.0 34.0 34.0 33.0 34.0 3 33.367001894767526 34.0 34.0 34.0 34.0 34.0 4 33.44978866054511 34.0 34.0 34.0 34.0 34.0 5 33.39740562600204 34.0 34.0 34.0 34.0 34.0 6 36.783442646844485 38.0 37.0 38.0 34.0 38.0 7 36.791808774231164 38.0 37.0 38.0 34.0 38.0 8 36.55717825389885 38.0 37.0 38.0 34.0 38.0 9 36.62183355196036 38.0 37.0 38.0 34.0 38.0 10-11 36.486343098673665 38.0 37.0 38.0 34.0 38.0 12-13 36.47861827721907 38.0 37.0 38.0 34.0 38.0 14-15 36.54025652237283 38.0 37.0 38.0 34.0 38.0 16-17 36.333508234951175 38.0 37.0 38.0 34.0 38.0 18-19 36.383865325754265 38.0 37.0 38.0 34.0 38.0 20-21 36.496691444395864 38.0 37.0 38.0 34.0 38.0 22-23 36.352164407520775 38.0 37.0 38.0 34.0 38.0 24-25 36.30208424427926 38.0 37.0 38.0 34.0 38.0 26-27 36.11958898119808 38.0 36.5 38.0 33.5 38.0 28-29 35.997114123305636 38.0 36.5 38.0 32.5 38.0 30-31 35.95990380411018 38.0 37.0 38.0 32.0 38.0 32-33 35.798323859495696 38.0 36.5 38.0 31.5 38.0 34-35 35.54522664334645 38.0 36.0 38.0 31.0 38.0 36-37 35.54102900451829 38.0 36.0 38.0 31.0 38.0 38-39 35.004882670164704 38.0 35.0 38.0 27.0 38.0 40-41 35.64476023903221 38.0 36.0 38.0 31.5 38.0 42-43 35.965544381285525 38.0 36.5 38.0 32.5 38.0 44-45 35.97888062964583 38.0 36.5 38.0 32.0 38.0 46-47 36.013715201865615 38.0 37.0 38.0 32.5 38.0 48-49 35.969465092552106 38.0 36.5 38.0 32.0 38.0 50-51 35.85882524413351 38.0 36.0 38.0 31.5 38.0 52-53 35.88565806733712 38.0 36.5 38.0 31.5 38.0 54-55 35.83840548025069 38.0 37.0 38.0 31.5 38.0 56-57 35.85104212213963 38.0 36.0 38.0 32.0 38.0 58-59 35.71256376621484 38.0 36.0 38.0 31.0 38.0 60-61 35.70720011660108 38.0 36.0 38.0 31.0 38.0 62-63 35.77638828159161 38.0 36.0 38.0 31.0 38.0 64-65 35.81104795219356 38.0 36.0 38.0 31.0 38.0 66-67 35.72193557790409 38.0 36.0 38.0 31.0 38.0 68-69 35.26822620609241 38.0 36.0 38.0 29.5 38.0 70-71 33.79075936452412 37.5 33.0 38.0 22.0 38.0 72-73 31.63575280571345 37.0 26.5 38.0 11.0 38.0 74-75 31.371155808191226 37.0 25.0 38.0 11.0 38.0 76 30.78752368459408 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 2.0 22 2.0 23 12.0 24 18.0 25 48.0 26 101.0 27 161.0 28 297.0 29 478.0 30 749.0 31 1142.0 32 1604.0 33 2552.0 34 3840.0 35 5967.0 36 6234.0 37 11097.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.06515085264539 16.773065150852645 12.590001457513484 37.57178253898849 2 17.796239615216443 15.618714473108877 43.4951173298353 23.08992858183938 3 17.39979594811252 20.271097507651945 39.75805276198805 22.571053782247485 4 13.511149978137299 27.753971724238447 32.126512170237575 26.608366127386677 5 13.027255502113395 32.76781810231745 40.19239177962396 14.012534615945196 6 26.080746246902788 41.425448185395716 15.499198367584901 16.9946072001166 7 24.465821308847108 26.929019093426614 17.941990963416412 30.66316863430987 8 20.845357819559833 41.60909488412768 16.230870135548752 21.314677160763736 9 19.833843463052034 17.35024048972453 15.172715347616966 47.64320069960647 10-11 22.10319195452558 27.264247194286543 27.264247194286543 23.368313656901325 12-13 22.45882524413351 16.60982364086868 29.056988777146188 31.874362337851625 14-15 21.93412039061361 17.576155079434486 18.396735169800323 42.092989360151584 16-17 30.4955545838799 26.745372394694648 17.115580819122577 25.64349220230287 18-19 30.5028421512899 21.339454889957732 17.386678326774526 30.771024631977845 20-21 22.30724384200554 19.249380556770152 17.45080891998251 40.9925666812418 22-23 23.05932079871739 27.69858621192246 17.35024048972453 31.89185249963562 24-25 30.405188747995922 28.65180002915027 17.65923334790847 23.283777874945343 26-27 29.572948549774086 29.41116455327212 20.24631977845795 20.769567118495846 28-29 21.141233056405774 20.276927561579942 29.32662877131613 29.25521061069815 30-31 21.482291211193704 17.64320069960647 38.969537968226206 21.90497012097362 32-33 27.775834426468442 18.941845212068213 23.589855706165284 29.69246465529806 34-35 22.761988048389448 20.667541174755865 27.360443084098527 29.210027692756157 36-37 20.371665937909924 34.592624981781086 21.54496429091969 23.4907447893893 38-39 20.70543652528786 22.34513919253753 27.781664480396444 29.167759801778164 40-41 20.918233493659816 18.5016761405043 30.29150269639994 30.28858766943594 42-43 29.42573968809212 18.65763008307827 29.5146480104941 22.40198221833552 44-45 21.626585045911675 26.152164407520768 30.190934266141962 22.030316280425595 46-47 29.347033960064127 18.632852353884275 22.571053782247485 29.44905990380411 48-49 28.641597434776273 17.068940387698586 21.824806879463633 32.46465529806151 50-51 21.279696837195743 17.780206966914445 30.419763882815914 30.520332313073894 52-53 19.335373852208132 18.10377495991838 39.059903804110185 23.5009473837633 54-55 19.606471359860077 17.574697565952484 32.775105669727445 30.04372540445999 56-57 27.974056260020408 17.60093280862848 24.70485351989506 29.720157411456054 58-59 21.085847544089784 20.209881941407957 36.20463489287276 22.499635621629498 60-61 27.529514648010494 29.532138172278096 22.725550211339453 20.212796968371958 62-63 19.038041101880193 41.79711412330564 18.424427925958316 20.74041684885585 64-65 18.221833551960355 43.0112228538114 18.14750036437837 20.619443229849878 66-67 17.781664480396444 43.197784579507356 18.538113977554293 20.482436962541904 68-69 17.82830491182043 43.183209444687364 18.170820580090368 20.817665063401837 70-71 18.354467278822327 40.040810377495994 19.19108001749016 22.413642326191518 72-73 19.36306660836613 33.716659379099255 20.94446873633581 25.975805276198805 74-75 19.328086284798136 31.517271534761697 22.624981781081473 26.529660399358697 76 19.18962250400816 31.721323422241653 22.5010931351115 26.587960938638684 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.5 16 5.0 17 7.0 18 5.0 19 3.5 20 9.5 21 15.0 22 15.0 23 19.5 24 26.5 25 29.0 26 54.5 27 81.0 28 103.5 29 125.0 30 147.0 31 175.5 32 244.5 33 307.0 34 359.0 35 459.0 36 578.5 37 650.0 38 833.5 39 1954.5 40 3201.0 41 3397.0 42 3284.0 43 2867.0 44 2179.5 45 1714.0 46 1519.0 47 1477.5 48 1321.5 49 1143.5 50 1080.0 51 970.0 52 763.0 53 656.5 54 647.0 55 614.5 56 512.0 57 424.5 58 407.0 59 380.5 60 386.0 61 430.0 62 442.0 63 443.0 64 464.0 65 473.5 66 482.0 67 501.0 68 534.0 69 575.0 70 578.0 71 573.0 72 579.0 73 567.0 74 505.0 75 461.0 76 426.5 77 344.0 78 255.0 79 214.0 80 194.0 81 142.5 82 91.0 83 71.0 84 62.0 85 39.5 86 19.0 87 12.0 88 9.0 89 4.0 90 2.5 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 34305.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.4852062381577 #Duplication Level Percentage of deduplicated Percentage of total 1 71.22069980749632 36.668124180148666 2 17.665043596421697 18.189768255356363 3 5.916657230211754 9.138609532138172 4 2.174159211867286 4.477481416703104 5 1.2682595402559167 3.264830199679347 6 0.6058204053901031 1.8714473108876257 7 0.41897859812025817 1.509983967351698 8 0.16985618842713168 0.6996064713598601 9 0.0905899671611369 0.41976388281591603 >10 0.3906692333824029 2.9820725841714033 >50 0.011323745895142113 0.40227372103191955 >100 0.05095685652813951 4.935140650051013 >500 0.011323745895142113 3.533012680367294 >1k 0.005661872947571056 11.90788514793762 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 4085 11.90788514793762 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 664 1.9355779040956127 RNA PCR Primer, Index 48 (95% over 23bp) TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 548 1.5974347762716805 No Hit TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 349 1.0173444104357965 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 317 0.9240635475878152 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 254 0.7404168488558519 RNA PCR Primer, Index 48 (95% over 21bp) CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 208 0.6063256085118788 No Hit TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 125 0.3643783704999271 No Hit TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT 123 0.3585483165719283 RNA PCR Primer, Index 48 (95% over 22bp) CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 109 0.31773793907593645 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 106 0.3089928581839382 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 102 0.2973327503279405 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 80 0.23320215711995335 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT 58 0.16907156391196618 No Hit TCTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 45 0.13117621337997376 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT 42 0.1224311324879755 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.002915026963999417 0.0 6 0.0 0.0 0.0 0.002915026963999417 0.0 7 0.0 0.0 0.0 0.002915026963999417 0.0 8 0.0 0.0 0.0 0.002915026963999417 0.0 9 0.0 0.0 0.0 0.00874508089199825 0.0 10 0.0 0.0 0.0 0.00874508089199825 0.0 11 0.0 0.0 0.0 0.014575134819997084 0.0 12 0.0 0.0 0.0 0.014575134819997084 0.0 13 0.0 0.0 0.0 0.014575134819997084 0.0 14 0.0 0.0 0.0 0.014575134819997084 0.0 15 0.0 0.0 0.0 0.014575134819997084 0.0 16 0.0 0.0 0.0 0.014575134819997084 0.0 17 0.0 0.0 0.0 0.0174901617839965 0.0 18 0.0 0.0 0.0 0.0174901617839965 0.0 19 0.0 0.0 0.0 0.032065296603993584 0.0 20 0.0 0.0 0.0 0.037895350531992424 0.0 21 0.0 0.0 0.0 0.04955545838799009 0.0 22 0.0 0.0 0.0 0.04955545838799009 0.0 23 0.0 0.0 0.0 0.052470485351989504 0.0 24 0.0 0.0 0.0 0.05538551231598892 0.0 25 0.0 0.0 0.0 0.058300539279988337 0.0 26 0.0 0.0 0.0 0.06121556624398776 0.0 27 0.0 0.0 0.0 0.08162075499198368 0.0 28 0.0 0.0 0.0 0.13409124034397318 0.0 29 0.0 0.0 0.0 0.1544964290919691 0.0 30 0.0 0.0 0.0 0.19530680658796093 0.0 31 0.0 0.0 0.0 0.23611718408395277 0.0 32 0.0 0.0 0.0 0.2740125346159452 0.0 33 0.0 0.0 0.0 0.3235679930039353 0.0 34 0.0 0.0 0.0 0.39935869406792013 0.0 35 0.0 0.0 0.0 0.5130447456638974 0.0 36 0.0 0.0 0.0 0.6996064713598601 0.0 37 0.0 0.0 0.0 1.014429383471797 0.0 38 0.0 0.0 0.0 1.314677160763737 0.0 39 0.0 0.0 0.0 1.6090948841276782 0.0 40 0.0 0.0 0.0 1.9239177962396152 0.0 41 0.0 0.0 0.0 2.253315843171549 0.0 42 0.0 0.0 0.0 2.6614196181314678 0.0 43 0.0 0.0 0.0 3.046203177379391 0.0 44 0.0 0.0 0.0 3.4222416557353155 0.0 45 0.0 0.0 0.0 3.809940241947238 0.0 46 0.0 0.0 0.0 4.185978720303162 0.0 47 0.0 0.0 0.0 4.588252441335082 0.0 48 0.0 0.0 0.0 5.016761405042996 0.0 49 0.0 0.0 0.0 5.427780206966914 0.0 50 0.0 0.0 0.0 5.830053927998834 0.0 51 0.0 0.0 0.0 6.206092406354759 0.0 52 0.0 0.0 0.0 6.558810668998688 0.0 53 0.0 0.0 0.0 6.969829470922606 0.0 54 0.0 0.0 0.0 7.313802652674537 0.0 55 0.0 0.0 0.0 7.684011077102463 0.0 56 0.0 0.0 0.0 8.086284798134383 0.0 57 0.0 0.0 0.0 8.520623815770296 0.0 58 0.0 0.0 0.0 8.908322401982218 0.0 59 0.0 0.0 0.0 9.29602098819414 0.0 60 0.0 0.0 0.0 9.689549628334062 0.0 61 0.0 0.0 0.0 10.080163241509984 0.0 62 0.0 0.0 0.0 10.377495991837925 0.0 63 0.0 0.0 0.0 10.686488850021863 0.0 64 0.0 0.0 0.0 11.074187436233785 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCCCTT 15 0.0022064976 70.0 42 GTAATCG 15 0.0022064976 70.0 36 CTAGTGG 15 0.0022064976 70.0 4 CTATACA 40 7.271774E-7 52.5 1 TTTCCTA 20 0.0068949624 52.5 48 TTACAAA 20 0.0068949624 52.5 29 CTTGAAA 720 0.0 44.236115 57 AATCTCG 670 0.0 43.8806 36 TTGAAAA 720 0.0 43.750004 58 CGTCTTC 730 0.0 43.630135 48 GTCTTCT 730 0.0 43.630135 49 TATGCCG 740 0.0 43.513515 43 ATGCCGT 740 0.0 43.513515 44 CTGCTTG 725 0.0 43.448277 54 TCTTCTG 725 0.0 43.448277 50 CCGTCTT 735 0.0 43.333336 47 GCCGTCT 735 0.0 43.333336 46 TCTCGTA 695 0.0 43.309353 38 TGCCGTC 745 0.0 43.221474 45 CTCGTAT 730 0.0 43.150684 39 >>END_MODULE