SRR1779765_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779765_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27251
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	1698	6.230964001321052	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	566	2.076988000440351	TruSeq Adapter, Index 2 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	299	1.0972074419287365	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	265	0.972441378298044	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	222	0.8146490037062861	No Hit
CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	204	0.7485963817841547	No Hit
TATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCT	103	0.3779677809988624	No Hit
TTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	97	0.355950240358152	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	91	0.33393269971744155	No Hit
CTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	83	0.304575978863161	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	82	0.30090638875637593	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT	53	0.19448827565960883	No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT	50	0.1834795053392536	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	46	0.16880114491211332	No Hit
TCTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	43	0.1577923745917581	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTATA	35	2.8687828E-7	60.000004	2
TATGAGG	20	0.0068797884	52.5	51
TCTTTAT	40	7.2158946E-7	52.5	1
TATAGCA	20	0.0068797884	52.5	2
CGCCGCG	20	0.0068797884	52.5	54
AAACCAA	30	5.7783874E-4	46.666668	70
CTATACA	50	3.3570614E-6	42.0	1
TTTATAC	50	3.3570614E-6	42.0	3
CTTTACA	35	0.001234322	40.000004	1
TTCTGCT	490	0.0	35.714283	52
GTCTTCT	490	0.0	35.714283	49
CTGCTTG	490	0.0	35.714283	54
TCTTCTG	490	0.0	35.714283	50
CGTCTTC	500	0.0	35.7	48
ATCTCGT	475	0.0	35.368423	37
TCTCGTA	475	0.0	35.368423	38
TCTGCTT	495	0.0	35.353535	53
CCGTCTT	505	0.0	35.346535	47
GCCGTCT	505	0.0	35.346535	46
CTCGTAT	505	0.0	35.346535	39