##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779764_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15584 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.23941221765914 34.0 34.0 34.0 32.0 34.0 2 33.31371919917864 34.0 34.0 34.0 33.0 34.0 3 33.3758341889117 34.0 34.0 34.0 34.0 34.0 4 33.44808778234086 34.0 34.0 34.0 34.0 34.0 5 33.391042094455855 34.0 34.0 34.0 34.0 34.0 6 36.77354979466119 38.0 37.0 38.0 34.0 38.0 7 36.77996663244353 38.0 37.0 38.0 34.0 38.0 8 36.48966889117043 38.0 37.0 38.0 34.0 38.0 9 36.5444045174538 38.0 37.0 38.0 34.0 38.0 10-11 36.4577772073922 38.0 37.0 38.0 34.0 38.0 12-13 36.4227091889117 38.0 37.0 38.0 34.0 38.0 14-15 36.444654774127315 38.0 37.0 38.0 34.0 38.0 16-17 36.221188398357285 38.0 36.5 38.0 34.0 38.0 18-19 36.230524897330596 38.0 37.0 38.0 34.0 38.0 20-21 36.418955338809035 38.0 37.0 38.0 34.0 38.0 22-23 36.283656314168375 38.0 37.0 38.0 34.0 38.0 24-25 36.19285805954826 38.0 36.0 38.0 34.0 38.0 26-27 35.98350872689939 38.0 36.0 38.0 32.0 38.0 28-29 35.775250256673516 38.0 36.0 38.0 31.5 38.0 30-31 35.520501796714576 38.0 36.0 38.0 31.0 38.0 32-33 35.485465862423 38.0 36.0 38.0 31.0 38.0 34-35 35.38051848049281 38.0 36.0 38.0 29.0 38.0 36-37 35.355204055441476 38.0 36.0 38.0 31.0 38.0 38-39 34.42277335728953 37.0 34.0 38.0 26.0 38.0 40-41 35.38154517453799 37.5 36.0 38.0 29.5 38.0 42-43 35.850006416837786 38.0 36.0 38.0 31.5 38.0 44-45 35.86280800821355 38.0 36.0 38.0 31.0 38.0 46-47 35.834958932238195 38.0 36.0 38.0 31.5 38.0 48-49 35.81817890143738 38.0 36.0 38.0 31.5 38.0 50-51 35.709381416837786 38.0 36.0 38.0 31.0 38.0 52-53 35.75981776180698 38.0 36.0 38.0 31.0 38.0 54-55 35.67421714579056 38.0 36.0 38.0 31.0 38.0 56-57 35.63465734086242 38.0 36.0 38.0 31.0 38.0 58-59 35.463359856262834 38.0 36.0 38.0 31.0 38.0 60-61 35.49496278234086 38.0 36.0 38.0 31.0 38.0 62-63 35.53567761806981 38.0 36.0 38.0 31.0 38.0 64-65 35.609086242299796 38.0 36.0 38.0 31.0 38.0 66-67 35.55329183778234 38.0 36.0 38.0 31.0 38.0 68-69 34.8371727412731 38.0 35.0 38.0 26.0 38.0 70-71 33.0600295174538 37.5 31.5 38.0 17.0 38.0 72-73 30.73816093429158 37.0 24.0 38.0 11.0 38.0 74-75 30.342306211498972 37.0 23.0 38.0 11.0 38.0 76 29.748588295687885 36.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 0.0 22 4.0 23 8.0 24 16.0 25 38.0 26 51.0 27 114.0 28 150.0 29 240.0 30 404.0 31 550.0 32 848.0 33 1256.0 34 1991.0 35 2819.0 36 2755.0 37 4337.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.678901437371664 17.26771047227926 13.135266940451745 38.91812114989733 2 16.43352156057495 14.899897330595483 45.61729979466119 23.049281314168375 3 15.663501026694046 21.817248459958932 41.24101642710472 21.2782340862423 4 12.833675564681723 28.343172484599588 31.02541067761807 27.79774127310062 5 12.403747433264888 34.59958932238193 39.502053388090346 13.494609856262835 6 24.287731006160165 41.40143737166325 15.368326488706366 18.942505133470224 7 22.56160164271047 30.44147843942505 16.06776180698152 30.92915811088296 8 19.71252566735113 41.63244353182752 16.401437371663246 22.253593429158112 9 19.147843942505133 17.94147843942505 14.22612936344969 48.684548254620125 10-11 21.201232032854207 27.204183778234086 27.61165297741273 23.982931211498972 12-13 21.358444558521562 15.807879876796715 28.789142710472284 34.04453285420945 14-15 22.568018480492814 17.04312114989733 17.729722792607802 42.659137577002056 16-17 30.547356262833674 26.92505133470226 15.111652977412732 27.415939425051334 18-19 30.27784907597536 21.258983572895275 16.20251540041068 32.26065195071869 20-21 22.240759753593426 18.67620636550308 15.669917864476385 43.413116016427104 22-23 22.946611909650922 28.19558521560575 15.740503080082135 33.11729979466119 24-25 31.176206365503077 29.693916837782343 15.541581108829568 23.58829568788501 26-27 29.748459958932237 32.834958932238195 16.65169404517454 20.76488706365503 28-29 22.381930184804926 31.558008213552363 18.637705338809035 27.422356262833674 30-31 24.01822381930185 28.461883983572893 27.486524640657084 20.033367556468175 32-33 38.98549794661191 20.22266427104723 21.80762320328542 18.984214579055443 34-35 26.001026694045176 27.938911704312115 27.566735112936346 18.493326488706366 36-37 29.03298254620123 28.391298767967143 21.461113963039015 21.114604722792606 38-39 21.778747433264886 19.73177618069815 28.19237679671458 30.29709958932238 40-41 20.97985112936345 17.521175564681723 29.806211498973305 31.69276180698152 42-43 30.030800821355236 17.87731006160164 29.957007186858313 22.134881930184804 44-45 22.372304928131417 25.29838295687885 30.30993326488706 22.01937885010267 46-47 29.68429158110883 17.48588295687885 22.045046201232033 30.784779260780287 48-49 29.36024127310062 15.429286447638605 21.249358316221766 33.96111396303901 50-51 21.41298767967146 16.074178644763858 30.80723819301848 31.7055954825462 52-53 19.64835728952772 16.154389117043124 39.98652464065708 24.210728952772072 54-55 20.055826488706366 16.038886036960985 33.065965092402465 30.839322381930184 56-57 28.90464579055442 16.1351386036961 24.83637063655031 30.123844969199176 58-59 21.653619096509242 19.9435318275154 36.20379876796714 22.199050308008214 60-61 27.560318275154007 31.596509240246405 21.563783367556468 19.279389117043124 62-63 18.95533880903491 44.090092402464066 17.447381930184804 19.50718685831622 64-65 18.08585728952772 46.522073921971256 16.3083932238193 19.083675564681723 66-67 17.32546201232033 46.54774127310062 16.15118069815195 19.975616016427107 68-69 17.800308008213552 45.559548254620125 16.488064681724847 20.15207905544148 70-71 17.947895277207394 43.05698151950719 17.755390143737166 21.239733059548254 72-73 19.3467659137577 36.15567248459959 19.43981006160164 25.057751540041068 74-75 19.892197125256676 33.54722792607803 20.726386036960985 25.834188911704313 76 20.37987679671458 34.74717659137577 20.046201232032853 24.826745379876797 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 1.0 15 1.0 16 1.5 17 1.0 18 2.5 19 5.0 20 8.0 21 10.0 22 17.0 23 23.0 24 27.5 25 33.0 26 45.0 27 56.5 28 61.0 29 66.0 30 88.5 31 114.5 32 132.0 33 146.0 34 184.5 35 231.0 36 256.0 37 273.0 38 364.0 39 939.0 40 1579.5 41 1611.0 42 1486.0 43 1272.5 44 922.0 45 667.5 46 550.0 47 501.5 48 444.0 49 384.0 50 333.0 51 322.0 52 273.5 53 236.5 54 237.0 55 247.5 56 238.5 57 191.0 58 163.0 59 176.0 60 182.0 61 215.0 62 255.0 63 239.5 64 230.0 65 266.5 66 287.5 67 278.0 68 282.0 69 312.0 70 313.0 71 288.0 72 280.0 73 275.5 74 258.0 75 237.0 76 216.5 77 179.0 78 145.0 79 128.0 80 99.5 81 64.5 82 47.0 83 36.0 84 29.0 85 17.0 86 9.5 87 7.0 88 4.5 89 1.5 90 2.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 15584.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.397587268993846 #Duplication Level Percentage of deduplicated Percentage of total 1 77.50597337581068 43.71149897330596 2 15.917624303106157 17.954312114989733 3 3.9708726817612927 6.718429158110883 4 1.2970758903174424 2.9260780287474333 5 0.4664922061667994 1.3154517453798769 6 0.1706678803049266 0.5775154004106776 7 0.1251564455569462 0.49409650924024645 8 0.11377858686995107 0.5133470225872689 9 0.056889293434975535 0.2887577002053388 >10 0.22755717373990214 2.245893223819302 >50 0.07964501080896576 3.3303388090349078 >100 0.056889293434975535 8.386806981519507 >500 0.0 0.0 >1k 0.011377858686995108 11.537474332648872 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 1798 11.537474332648872 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 485 3.1121663244353184 RNA PCR Primer, Index 47 (95% over 21bp) CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 236 1.5143737166324436 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 221 1.4181211498973307 No Hit CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 195 1.251283367556468 No Hit TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 170 1.0908624229979467 No Hit TCTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 82 0.5261806981519507 No Hit TATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCT 81 0.5197638603696099 No Hit TTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 79 0.5069301848049281 No Hit CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 77 0.49409650924024645 No Hit CTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 77 0.49409650924024645 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 63 0.40426078028747436 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT 60 0.3850102669404517 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT 47 0.30159137577002054 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT 35 0.22458932238193016 No Hit TCTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 29 0.186088295687885 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAGCTCGTATGCCGT 26 0.1668377823408624 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGTCTT 24 0.1540041067761807 No Hit GTGTATAAGAGACAGGCAGCGTCAGATGTGTATAAGCTGTCTCTTATACA 20 0.12833675564681724 No Hit CTTATATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 17 0.10908624229979465 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006416837782340862 0.0 2 0.0 0.0 0.0 0.006416837782340862 0.0 3 0.0 0.0 0.0 0.006416837782340862 0.0 4 0.0 0.0 0.0 0.006416837782340862 0.0 5 0.0 0.0 0.0 0.006416837782340862 0.0 6 0.0 0.0 0.0 0.006416837782340862 0.0 7 0.0 0.0 0.0 0.006416837782340862 0.0 8 0.0 0.0 0.0 0.006416837782340862 0.0 9 0.0 0.0 0.0 0.006416837782340862 0.0 10 0.0 0.0 0.0 0.019250513347022588 0.0 11 0.0 0.0 0.0 0.019250513347022588 0.0 12 0.0 0.0 0.0 0.019250513347022588 0.0 13 0.0 0.0 0.0 0.019250513347022588 0.0 14 0.0 0.0 0.0 0.019250513347022588 0.0 15 0.0 0.0 0.0 0.019250513347022588 0.0 16 0.0 0.0 0.0 0.019250513347022588 0.0 17 0.0 0.0 0.0 0.019250513347022588 0.0 18 0.0 0.0 0.0 0.019250513347022588 0.0 19 0.0 0.0 0.0 0.02566735112936345 0.0 20 0.0 0.0 0.0 0.038501026694045176 0.0 21 0.0 0.0 0.0 0.038501026694045176 0.0 22 0.0 0.0 0.0 0.038501026694045176 0.0 23 0.0 0.0 0.0 0.038501026694045176 0.0 24 0.0 0.0 0.0 0.038501026694045176 0.0 25 0.0 0.0 0.0 0.038501026694045176 0.0 26 0.0 0.0 0.0 0.038501026694045176 0.0 27 0.0 0.0 0.0 0.038501026694045176 0.0 28 0.0 0.0 0.0 0.04491786447638604 0.0 29 0.0 0.0 0.0 0.0513347022587269 0.0 30 0.0 0.0 0.0 0.06416837782340862 0.0 31 0.0 0.0 0.0 0.08983572895277207 0.0 32 0.0 0.0 0.0 0.09625256673511294 0.0 33 0.0 0.0 0.0 0.14117043121149897 0.0 34 0.0 0.0 0.0 0.24383983572895276 0.0 35 0.0 0.0 0.0 0.3400924024640657 0.0 36 0.0 0.0 0.0 0.4491786447638604 0.0 37 0.0 0.0 0.0 0.8085215605749486 0.0 38 0.0 0.0 0.0 1.0074435318275154 0.0 39 0.0 0.0 0.0 1.1678644763860369 0.0 40 0.0 0.0 0.0 1.3603696098562628 0.0 41 0.0 0.0 0.0 1.591375770020534 0.0 42 0.0 0.0 0.0 1.86088295687885 0.0 43 0.0 0.0 0.0 2.091889117043121 0.0 44 0.0 0.0 0.0 2.3934804928131417 0.0 45 0.0 0.006416837782340862 0.0 2.6180698151950716 0.0 46 0.0 0.006416837782340862 0.0 2.9196611909650922 0.0 47 0.0 0.006416837782340862 0.0 3.1635010266940453 0.0 48 0.0 0.006416837782340862 0.0 3.4265913757700206 0.0 49 0.0 0.006416837782340862 0.0 3.6768480492813143 0.0 50 0.0 0.006416837782340862 0.0 3.8886036960985626 0.0 51 0.0 0.006416837782340862 0.0 4.126026694045175 0.0 52 0.0 0.006416837782340862 0.0 4.305698151950718 0.0 53 0.0 0.006416837782340862 0.0 4.530287474332649 0.0 54 0.0 0.006416837782340862 0.0 4.76129363449692 0.0 55 0.0 0.006416837782340862 0.0 5.082135523613963 0.0 56 0.0 0.006416837782340862 0.0 5.325975359342916 0.0 57 0.0 0.006416837782340862 0.0 5.589065708418891 0.0 58 0.0 0.006416837782340862 0.0 5.813655030800821 0.0 59 0.0 0.006416837782340862 0.0 6.0767453798767965 0.0 60 0.0 0.006416837782340862 0.0 6.314168377823409 0.0 61 0.0 0.006416837782340862 0.0 6.615759753593429 0.0 62 0.0 0.006416837782340862 0.0 6.8467659137577 0.0 63 0.0 0.006416837782340862 0.0 7.058521560574949 0.0 64 0.0 0.006416837782340862 0.0 7.308778234086242 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAATA 15 0.002183747 70.0 2 TAATACA 15 0.002183747 70.0 4 TTAATAC 15 0.002183747 70.0 3 TCTTAAT 15 0.002183747 70.0 1 CTTTACA 45 3.45608E-10 62.222218 1 TTACACA 45 3.45608E-10 62.222218 3 TTTACAC 45 3.45608E-10 62.222218 2 CTATACA 35 2.788256E-7 60.000004 1 AAAACTA 20 0.0068244096 52.5 70 AATACAC 20 0.0068244096 52.5 5 AAAAGAA 35 1.993132E-5 50.000004 70 AAACACA 30 5.7013467E-4 46.666664 70 ATCTCGT 475 0.0 41.26316 37 TCTCGTA 475 0.0 41.26316 38 CTTATAC 475 0.0 41.26316 1 CTCGTAT 510 0.0 40.490192 39 GATCTCG 470 0.0 40.212765 36 TGCTTGA 505 0.0 40.198025 55 AAAAACC 35 0.0012179628 40.000004 66 TTATACA 490 0.0 40.0 2 >>END_MODULE