FastQCFastQC Report
Wed 25 May 2016
SRR1779763_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779763_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16542
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTACGA150.002186135970.0000121
ATCTCGG150.002186135970.0000142
CTTTACG150.002186135970.0000130
GTGTATC150.002186135970.0000136
GTCGCCC150.002186135970.0000157
CCTCTTA150.002186135970.000019
ACGAGCC150.002186135970.0000124
CGTATCA150.002186135970.0000156
CGACGAC150.002186135970.0000122
AGATCTC150.002186135970.0000140
ACGTGTC150.002186135970.0000134
ACGCTTC252.322404E-455.99999615
TCGGTGG252.322404E-455.99999645
CTCGGTG252.322404E-455.99999644
TCCTTAA200.006831819752.50000460
TGTCTTA200.006831819752.50000456
CACGTGT200.006831819752.50000433
GCGGTCG200.006831819752.50000448
CCGTATC200.006831819752.50000455
GACGCTT200.006831819752.50000414
Produced by FastQC (version 0.11.5)