FastQCFastQC Report
Wed 25 May 2016
SRR1779762_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779762_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55999
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACACT150.002214613469.99374438
TCATTAA301.0071926E-769.99374460
CAATTGT150.002214613469.99374414
ACGCTTC308.281186E-658.3281215
CGAAACT252.3724108E-455.9949925
CGGTTGT252.3724108E-455.9949946
TTCGTTT252.3724108E-455.9949933
CTCGGTT252.3724108E-455.9949944
TCGGTTG252.3724108E-455.9949945
CGTATCC200.00692013852.4953156
GAAACTC200.00692013852.4953126
CGTCCAT200.00692013852.4953137
GCGTCGC200.00692013852.4953136
TCGGTGT200.00692013852.4953145
TGGTCTC200.00692013852.4953149
GCACTAA200.00692013852.4953128
CAGACTT200.00692013852.4953114
CATCTCA352.0629644E-549.9955339
CGGTGTT352.0629644E-549.99553346
GCCTACG352.0629644E-549.99553320
Produced by FastQC (version 0.11.5)