##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779762_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 55999 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.562242182896124 34.0 27.0 34.0 12.0 34.0 2 27.873140591796282 34.0 23.0 34.0 12.0 34.0 3 26.992482008607297 32.0 23.0 34.0 11.0 34.0 4 29.411507348345506 34.0 24.0 34.0 12.0 34.0 5 28.830996982088966 34.0 23.0 34.0 11.0 34.0 6 31.359613564527937 37.0 27.0 38.0 11.0 38.0 7 32.497866033322026 37.0 31.0 38.0 12.0 38.0 8 31.643797210664477 37.0 27.0 38.0 11.0 38.0 9 33.1617350309827 37.0 34.0 38.0 21.0 38.0 10-11 32.85789031946999 37.5 33.0 38.0 11.0 38.0 12-13 31.84877408525152 37.0 29.5 38.0 16.0 38.0 14-15 31.85919391417704 37.0 29.0 38.0 11.5 38.0 16-17 31.56078679976428 36.5 28.5 38.0 16.0 38.0 18-19 32.01302701833961 37.0 29.0 38.0 11.5 38.0 20-21 31.07127805853676 36.0 27.0 38.0 11.0 38.0 22-23 30.97053518812836 35.5 27.5 38.0 11.0 38.0 24-25 32.30960374292398 37.0 30.0 38.0 11.0 38.0 26-27 30.680181788960518 36.5 25.0 38.0 11.0 38.0 28-29 32.93039161413597 37.0 33.0 38.0 11.0 38.0 30-31 33.38960517152092 38.0 34.0 38.0 16.0 38.0 32-33 33.50180360363578 38.0 34.0 38.0 16.0 38.0 34-35 33.57058161752889 38.0 34.0 38.0 21.0 38.0 36-37 31.29719280701441 36.5 27.5 38.0 11.0 38.0 38-39 29.495660636797087 34.5 23.0 38.0 11.0 38.0 40-41 30.812068072644156 35.5 26.0 38.0 11.0 38.0 42-43 31.919953927748708 36.5 30.0 38.0 16.0 38.0 44-45 33.5950820550367 38.0 34.0 38.0 21.0 38.0 46-47 32.07396560652869 37.5 29.5 38.0 16.0 38.0 48-49 31.321318237825672 36.5 27.5 38.0 14.0 38.0 50-51 29.175547777638887 34.5 22.5 38.0 11.0 38.0 52-53 32.71332523795068 37.0 32.5 38.0 15.5 38.0 54-55 31.761576099573205 37.0 29.0 38.0 11.0 38.0 56-57 32.17600314291327 37.5 29.5 38.0 16.0 38.0 58-59 33.34552402721477 37.5 34.0 38.0 21.0 38.0 60-61 33.82626475472776 38.0 35.0 38.0 21.0 38.0 62-63 33.706655475990644 38.0 34.5 38.0 16.0 38.0 64-65 33.36294398114252 38.0 35.0 38.0 16.0 38.0 66-67 31.394551688423007 37.0 26.5 38.0 11.0 38.0 68-69 31.381890748049074 37.0 26.5 38.0 11.0 38.0 70-71 30.772147716923516 36.5 25.5 38.0 11.0 38.0 72-73 29.653797389239095 35.0 23.5 38.0 11.0 38.0 74-75 31.75641529313023 36.5 29.0 38.0 11.0 38.0 76 32.37006017964607 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 21.0 13 113.0 14 302.0 15 482.0 16 729.0 17 1097.0 18 1361.0 19 1427.0 20 1165.0 21 949.0 22 781.0 23 679.0 24 631.0 25 597.0 26 706.0 27 764.0 28 1015.0 29 1205.0 30 1709.0 31 2297.0 32 3154.0 33 4660.0 34 6406.0 35 8859.0 36 9926.0 37 4964.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.72922730763049 18.562831479133557 11.348416936016715 33.359524277219236 2 20.721798603546493 16.43422203967928 39.17034232754156 23.673637029232665 3 19.786067608350148 16.92173074519188 36.14885980106788 27.143341845390097 4 14.689810350369656 18.01850066073788 31.131468981035038 36.160220007857426 5 14.769906605475096 28.45943677565671 39.19712852015215 17.57352809871605 6 29.427311201985752 32.2309326952267 15.930641618600333 22.411114484187216 7 27.355845640100718 25.812960945731174 19.400346434757765 27.430846979410344 8 23.291487347988358 31.350559831425564 18.109251950927696 27.24870086965839 9 22.359327845140093 14.987767638707833 19.628921945034733 43.023982571117344 10-11 25.240629296951735 23.024518294969553 26.36207789424811 25.372774513830603 12-13 24.28614796692798 18.91640922159324 28.64961874319184 28.147824068286937 14-15 23.987035482776477 21.703958999267844 23.4405971535206 30.86840836443508 16-17 25.43884712227004 22.156645654386686 25.47634779192486 26.92815943141842 18-19 22.599510705548315 22.10396614225254 27.390667690494475 27.90585546170467 20-21 24.89330166610118 21.74056679583564 26.18171753067019 27.184414007392988 22-23 25.689744459722498 21.172699512491295 26.374578117466385 26.76297791031983 24-25 22.953088448008 24.263826139752496 23.255772424507583 29.527312987731925 26-27 23.872747727637993 23.24595082055037 26.553152734870267 26.328148716941374 28-29 23.6522080751442 24.132573795960642 25.16384221146806 27.051375917427094 30-31 23.697744602582187 23.896855300987518 24.97008875158485 27.43531134484544 32-33 23.820961088590867 23.67720852158074 25.17991392703441 27.321916462793975 34-35 23.34505973320952 23.675422775406705 25.419203914355613 27.56031357702816 36-37 24.737941748959802 21.381631814853836 29.220164645797247 24.660261790389114 38-39 24.59240343577564 20.26821907534063 32.42111466276184 22.718262826121897 40-41 23.87810496616011 23.086126537973893 24.22543259701066 28.81033589885534 42-43 21.563777924605795 23.596849943748996 26.146895480276434 28.692476651368775 44-45 21.890569474454903 22.28254075965642 27.711209128734442 28.115680637154234 46-47 23.798851754957724 21.235390233666973 28.088252363902605 26.8775056474727 48-49 24.276326362970767 21.477169235164915 28.390685547956213 25.855818853908108 50-51 25.94064179717495 20.331613064519008 29.979999642850764 23.747745495455273 52-53 21.21109305523313 22.716477079947854 28.012107359059986 28.060322505759032 54-55 23.382560402864335 21.811103769710176 27.411203771495916 27.395132055929572 56-57 23.166485115805642 22.54325970106609 26.53350952695584 27.756745656172434 58-59 21.067340488223003 23.505776888873015 27.44066858336756 27.98621403953642 60-61 21.110198396399934 22.634332755942072 27.402275040625725 28.85319380703227 62-63 20.657511741281095 23.232557724245076 27.312987731923783 28.796942802550046 64-65 21.306630475544207 24.078108537652458 26.252254504544727 28.363006482258612 66-67 20.21018232468437 24.4986517616386 23.24059358202825 32.05057233164878 68-69 20.64565100910877 24.76245758171102 23.05679585640293 31.535095552777282 70-71 20.666440472151287 25.13973463811854 22.512902016107432 31.68092287362274 72-73 20.900373220950375 24.77365667244058 21.31466633332738 33.01130377328166 74-75 22.299505348309793 24.327220128930875 23.806675119198555 29.56659940356078 76 23.712923445061517 23.128984446150824 24.43615064554724 28.721941463240412 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 2.5 16 4.5 17 6.0 18 7.0 19 8.0 20 11.0 21 14.0 22 27.0 23 47.5 24 63.5 25 72.0 26 101.0 27 162.5 28 229.5 29 264.0 30 333.5 31 438.5 32 586.5 33 699.0 34 772.5 35 957.5 36 1224.5 37 1380.0 38 1525.5 39 1786.0 40 2072.5 41 2342.5 42 2441.0 43 2555.5 44 2707.0 45 2771.5 46 2799.0 47 2724.5 48 2641.5 49 2563.0 50 2493.0 51 2369.5 52 2144.5 53 1944.5 54 1846.0 55 1781.5 56 1683.5 57 1615.5 58 1581.0 59 1546.5 60 1505.5 61 1472.5 62 1446.0 63 1443.5 64 1417.5 65 1366.0 66 1252.0 67 1166.0 68 1125.0 69 997.0 70 848.5 71 787.0 72 686.0 73 530.0 74 440.0 75 405.0 76 345.0 77 260.5 78 200.5 79 165.0 80 141.0 81 94.5 82 52.0 83 32.0 84 25.5 85 16.0 86 10.0 87 7.0 88 6.5 89 4.0 90 2.0 91 2.0 92 2.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0017857461740388224 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 8.928730870194112E-4 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0160717155663494 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 55999.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 97.88389078376399 #Duplication Level Percentage of deduplicated Percentage of total 1 98.22308169445762 96.14457401025018 2 1.488670777538585 2.9143377560313577 3 0.21892217316743898 0.6428686226539759 4 0.04925748896267377 0.19286058679619278 5 0.014594811544495934 0.07142984696155288 6 0.0036487028861239834 0.021428954088465863 7 0.0018243514430619917 0.012500223218271756 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0017857461740388221 0.0 10 0.0 0.0 0.0 0.0017857461740388221 0.0 11 0.0 0.0 0.0 0.0017857461740388221 0.0 12 0.0 0.0 0.0 0.0017857461740388221 0.0 13 0.0 0.0 0.0 0.0017857461740388221 0.0 14 0.0 0.0 0.0 0.0017857461740388221 0.0 15 0.0 0.0 0.0 0.0017857461740388221 0.0 16 0.0 0.0 0.0 0.0035714923480776443 0.0 17 0.0 0.0 0.0 0.0035714923480776443 0.0 18 0.0 0.0 0.0 0.0035714923480776443 0.0 19 0.0 0.0 0.0 0.007142984696155289 0.0 20 0.0 0.0 0.0 0.00892873087019411 0.0 21 0.0 0.0 0.0 0.00892873087019411 0.0 22 0.0 0.0 0.0 0.01785746174038822 0.0 23 0.0 0.0 0.0 0.02500044643654351 0.0 24 0.0 0.0 0.0 0.037500669654815265 0.0 25 0.0 0.0 0.0 0.03928641582885409 0.0 26 0.0 0.0 0.0 0.044643654350970556 0.0 27 0.0 0.0 0.0 0.06250111609135878 0.0 28 0.0 0.0 0.0 0.08393007017982464 0.0 29 0.0 0.0 0.0 0.09285880105001874 0.0 30 0.0 0.0 0.0 0.10535902426829051 0.0 31 0.0 0.0 0.0 0.11428775513848462 0.0 32 0.0 0.0 0.0 0.13393096305291166 0.0 33 0.0 0.0 0.0 0.14821693244522224 0.0 34 0.0 0.0 0.0 0.17500312505580456 0.0 35 0.0 0.0 0.0 0.24107573349524097 0.0 36 0.0 0.0 0.0 0.3160770728048715 0.0 37 0.0 0.0 0.0 0.532152359863569 0.0017857461740388221 38 0.0 0.0 0.0 0.7035839925712959 0.0017857461740388221 39 0.0 0.0 0.0 0.9303737566742263 0.0017857461740388221 40 0.0 0.0 0.0 1.203592921302166 0.0017857461740388221 41 0.0 0.0 0.0 1.5589564099358917 0.0017857461740388221 42 0.0 0.0 0.0 1.9482490758763549 0.0017857461740388221 43 0.0 0.0 0.0 2.3875426346899054 0.0017857461740388221 44 0.0 0.0 0.0 2.8125502241111446 0.0017857461740388221 45 0.0 0.0 0.0 3.1286272969160165 0.0017857461740388221 46 0.0 0.0 0.0 3.510776978160324 0.0017857461740388221 47 0.0 0.0 0.0 4.021500383935427 0.0017857461740388221 48 0.0 0.0 0.0 4.359006410828765 0.0017857461740388221 49 0.0 0.0 0.0 4.684012214503831 0.0017857461740388221 50 0.0 0.0 0.0 5.180449650886623 0.0017857461740388221 51 0.0 0.0 0.0 5.703673279879998 0.0017857461740388221 52 0.0 0.0 0.0 6.150109823389704 0.0017857461740388221 53 0.0 0.0 0.0 6.7501205378667475 0.0017857461740388221 54 0.0 0.0 0.0 7.296558867122627 0.0017857461740388221 55 0.0 0.0 0.0 7.692994517759246 0.0017857461740388221 56 0.0 0.0 0.0 8.105501883962214 0.0017857461740388221 57 0.0 0.0 0.0 8.507294773120949 0.0017857461740388221 58 0.0 0.0 0.0 8.80730013035947 0.0017857461740388221 59 0.0 0.0 0.0 9.200164288648011 0.0017857461740388221 60 0.0 0.0 0.0 9.444811514491331 0.0017857461740388221 61 0.0 0.0 0.0 9.70195896355292 0.0017857461740388221 62 0.0 0.0 0.0 9.876962088608725 0.0017857461740388221 63 0.0 0.0 0.0 10.130538045322238 0.0017857461740388221 64 0.0 0.0 0.0 10.366256540295362 0.0017857461740388221 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACACT 15 0.0022146134 69.993744 38 TCATTAA 30 1.0071926E-7 69.993744 60 CAATTGT 15 0.0022146134 69.993744 14 ACGCTTC 30 8.281186E-6 58.32812 15 CGAAACT 25 2.3724108E-4 55.99499 25 CGGTTGT 25 2.3724108E-4 55.99499 46 TTCGTTT 25 2.3724108E-4 55.99499 33 CTCGGTT 25 2.3724108E-4 55.99499 44 TCGGTTG 25 2.3724108E-4 55.99499 45 CGTATCC 20 0.006920138 52.49531 56 GAAACTC 20 0.006920138 52.49531 26 CGTCCAT 20 0.006920138 52.49531 37 GCGTCGC 20 0.006920138 52.49531 36 TCGGTGT 20 0.006920138 52.49531 45 TGGTCTC 20 0.006920138 52.49531 49 GCACTAA 20 0.006920138 52.49531 28 CAGACTT 20 0.006920138 52.49531 14 CATCTCA 35 2.0629644E-5 49.995533 9 CGGTGTT 35 2.0629644E-5 49.995533 46 GCCTACG 35 2.0629644E-5 49.995533 20 >>END_MODULE