SRR1779762_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779762_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55999
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	3671	6.555474204896516	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	588	1.0500187503348273	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	488	0.8714441329309451	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	376	0.6714405614385971	RNA PCR Primer, Index 32 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	310	0.5535813139520349	No Hit
CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	244	0.43572206646547257	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	155	0.27679065697601746	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	143	0.25536170288755156	No Hit
TTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	140	0.2500044643654351	RNA PCR Primer, Index 32 (95% over 21bp)
CTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	133	0.23750424114716337	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	115	0.20536081001446455	No Hit
TATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCT	98	0.17500312505580456	RNA PCR Primer, Index 42 (95% over 21bp)
CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	97	0.17321737888176575	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	78	0.13928820157502814	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACCCGATCTCGTATGCCGT	73	0.13035947070483403	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	61	0.10893051661636814	No Hit
TCTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	56	0.10000178574617405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTATTC	15	0.0022138285	70.0	16
TTCCATC	15	0.0022138285	70.0	3
TTCGGCT	15	0.0022138285	70.0	20
TCTTTAT	45	3.7471182E-10	62.222225	1
TTAATAC	25	2.3713624E-4	56.000004	2
TTTACAC	25	2.3713624E-4	56.000004	2
CTTTATA	50	9.531504E-10	56.000004	2
TGTGGAA	20	0.0069176937	52.5	49
ATTCGGC	20	0.0069176937	52.5	19
TCGGCTA	20	0.0069176937	52.5	21
GAGACGT	20	0.0069176937	52.5	24
TATTCGG	20	0.0069176937	52.5	18
CGGCTAT	20	0.0069176937	52.5	22
CCGAAAA	20	0.0069176937	52.5	27
ACCCGAT	20	0.0069176937	52.5	32
TTCGAAC	20	0.0069176937	52.5	57
ACTCGAC	45	1.6570011E-6	46.666668	32
CGAACTC	30	5.8313156E-4	46.666664	35
AACTCGT	30	5.8313156E-4	46.666664	37
AATACAC	40	4.5387285E-5	43.75	4