##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779759_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 24832 Sequences flagged as poor quality 0 Sequence length 76 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.65004832474227 33.0 23.0 34.0 12.0 34.0 2 27.090649162371133 32.0 21.0 34.0 12.0 34.0 3 26.570151417525775 32.0 21.0 34.0 11.0 34.0 4 28.595884342783506 33.0 23.0 34.0 12.0 34.0 5 28.010188466494846 34.0 23.0 34.0 11.0 34.0 6 30.3278431056701 36.0 26.0 38.0 11.0 38.0 7 31.43234536082474 37.0 27.0 38.0 12.0 38.0 8 30.711541559278352 37.0 26.0 38.0 11.0 38.0 9 32.18826514175258 37.0 28.0 38.0 12.0 38.0 10-11 31.762383215206185 37.0 27.5 38.0 11.0 38.0 12-13 31.014316204896907 36.0 27.0 38.0 11.0 38.0 14-15 30.833480992268044 36.5 26.5 38.0 11.0 38.0 16-17 30.567090850515463 35.5 25.0 38.0 11.0 38.0 18-19 30.98218025128866 36.5 26.5 38.0 11.5 38.0 20-21 30.02879349226804 35.5 24.0 38.0 11.0 38.0 22-23 30.121758215206185 35.5 24.5 38.0 11.0 38.0 24-25 31.17843911082474 36.5 27.0 38.0 11.0 38.0 26-27 29.562922841494846 35.0 22.5 38.0 11.0 38.0 28-29 31.69219152706186 37.0 29.0 38.0 11.0 38.0 30-31 32.202379993556704 37.5 31.0 38.0 11.0 38.0 32-33 32.347777061855666 38.0 31.0 38.0 11.0 38.0 34-35 32.34125322164948 38.0 31.0 38.0 11.0 38.0 36-37 30.286847615979383 36.0 24.5 38.0 11.0 38.0 38-39 28.715125644329895 34.0 22.0 37.5 11.0 38.0 40-41 29.785478414948454 35.0 24.0 38.0 11.0 38.0 42-43 30.80742590206186 36.5 25.0 38.0 11.0 38.0 44-45 32.48073050902062 37.5 31.5 38.0 11.0 38.0 46-47 30.99484536082474 36.5 27.5 38.0 11.0 38.0 48-49 30.19460776417526 35.5 24.5 38.0 11.0 38.0 50-51 28.177170586340203 33.5 21.0 37.5 11.0 38.0 52-53 31.409089078608247 36.5 28.0 38.0 11.0 38.0 54-55 30.527625644329895 36.0 25.0 38.0 11.0 38.0 56-57 31.023699259020617 36.5 27.0 38.0 11.0 38.0 58-59 32.01455782860825 37.0 31.0 38.0 11.0 38.0 60-61 32.52931701030928 38.0 32.5 38.0 11.0 38.0 62-63 32.436976481958766 38.0 32.0 38.0 11.0 38.0 64-65 32.159431378865975 38.0 30.5 38.0 11.0 38.0 66-67 30.448574420103093 36.5 24.5 38.0 11.0 38.0 68-69 30.277746456185568 36.0 24.5 38.0 11.0 38.0 70-71 29.7085212628866 35.0 23.5 38.0 11.0 38.0 72-73 28.629208279639176 34.0 21.5 37.5 11.0 38.0 74-75 30.391672036082475 35.5 25.0 38.0 11.0 38.0 76 30.89489368556701 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 8.0 13 87.0 14 169.0 15 329.0 16 484.0 17 650.0 18 883.0 19 847.0 20 729.0 21 574.0 22 471.0 23 349.0 24 304.0 25 314.0 26 321.0 27 396.0 28 452.0 29 517.0 30 724.0 31 948.0 32 1365.0 33 1847.0 34 2641.0 35 3729.0 36 3946.0 37 1748.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.07297036082475 18.637242268041238 12.141591494845361 35.14819587628865 2 19.635953608247423 15.089400773195877 39.83569587628865 25.43894974226804 3 21.967622422680414 14.892074742268042 35.23276417525773 27.90753865979381 4 16.245167525773198 17.082796391752577 27.569265463917525 39.102770618556704 5 16.82506443298969 25.197326030927837 36.75499355670103 21.222615979381445 6 31.064755154639172 30.754671391752574 13.732280927835053 24.448292525773198 7 27.25112757731959 23.40125644329897 17.763369845360824 31.584246134020617 8 22.97036082474227 30.819104381443296 17.23582474226804 28.974710051546392 9 22.62403350515464 13.957796391752577 18.246617268041238 45.17155283505155 10-11 26.82828608247423 21.244764819587626 24.468427835051546 27.4585212628866 12-13 24.750322164948454 16.1706668814433 27.752496778350515 31.32651417525773 14-15 26.093347293814436 19.55943943298969 20.612516108247423 33.73469716494845 16-17 28.187419458762886 19.080219072164947 23.040834407216497 29.691527061855673 18-19 24.4543331185567 18.613079896907216 25.638289304123713 31.29429768041237 20-21 27.245086984536083 18.371456185567013 24.252980025773198 30.130476804123713 22-23 28.286082474226802 17.835856958762886 23.5120006443299 30.36605992268041 24-25 25.7007087628866 20.962870489690722 20.356797680412374 32.97962306701031 26-27 26.641027706185564 21.041398195876287 23.971085695876287 28.346488402061855 28-29 26.320876288659793 21.581024484536083 22.334085051546392 29.76401417525773 30-31 25.8960212628866 20.91454574742268 22.913981958762886 30.275451030927837 32-33 26.177915592783506 20.423244201030926 23.143524484536083 30.255315721649485 34-35 25.894007731958762 20.983005798969074 23.13547036082474 29.987516108247426 36-37 27.51490012886598 17.884181701030926 27.581346649484534 27.019571520618555 38-39 26.71351481958763 16.923727448453608 31.594313788659793 24.76844394329897 40-41 26.19402384020619 21.204494201030926 21.64747100515464 30.954010953608247 42-43 23.824097938144327 21.127980025773198 23.785840850515463 31.26208118556701 44-45 23.3629993556701 18.834568298969074 26.026900773195877 31.77553157216495 46-47 26.71351481958763 18.349307345360824 25.636275773195877 29.300902061855673 48-49 26.914867912371133 18.707715850515463 26.22624033505155 28.151175902061855 50-51 29.818379510309278 17.088836984536083 27.412210051546392 25.680573453608247 52-53 23.230106314432987 20.463514819587626 25.318137886597935 30.988240979381445 54-55 26.222213273195877 19.070151417525775 24.3737918814433 30.33384342783505 56-57 26.308795103092784 19.51514175257732 24.057667525773198 30.118395618556704 58-59 23.46568943298969 21.24073775773196 24.512725515463917 30.780847293814436 60-61 23.449581185567013 19.617831829896907 24.619442654639176 32.31314432989691 62-63 22.95827963917526 20.72728737113402 24.60132087628866 31.713112113402065 64-65 23.630798969072163 22.227367912371136 23.79188144329897 30.34995167525773 66-67 21.887081185567013 24.21069587628866 20.370892396907216 33.53133054123711 68-69 22.343274865577865 24.43160078136013 20.6113941639648 32.613730189097204 70-71 22.398518041237114 25.165109536082475 19.772873711340207 32.6634987113402 72-73 22.247503221649485 25.15906894329897 18.83859536082474 33.7548324742268 74-75 23.997261597938145 22.374355670103093 21.856878221649485 31.771504510309278 76 26.014819587628867 20.8239368556701 21.975676546391753 31.185567010309278 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.5 19 0.5 20 1.0 21 2.0 22 4.0 23 6.5 24 15.0 25 23.0 26 23.0 27 25.5 28 41.0 29 54.0 30 70.0 31 99.0 32 126.5 33 141.0 34 161.5 35 213.5 36 279.5 37 314.0 38 379.0 39 474.5 40 556.5 41 656.0 42 704.0 43 709.5 44 775.0 45 854.0 46 873.0 47 865.0 48 874.0 49 867.0 50 843.0 51 851.5 52 868.0 53 888.0 54 900.0 55 898.5 56 952.5 57 992.0 58 976.0 59 1026.0 60 1071.5 61 1074.5 62 1082.0 63 1089.5 64 1088.0 65 1048.0 66 948.5 67 880.0 68 838.0 69 727.0 70 595.5 71 533.0 72 478.5 73 383.0 74 291.5 75 241.0 76 203.5 77 155.0 78 108.0 79 72.0 80 67.5 81 51.5 82 30.5 83 21.0 84 13.5 85 4.5 86 4.0 87 5.0 88 3.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.5 94 1.5 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.01409471649484536 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 24832.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.14223582474226 #Duplication Level Percentage of deduplicated Percentage of total 1 99.17949551159674 98.3287693298969 2 0.7758235509159592 1.5383376288659796 3 0.04468093748730655 0.1328930412371134 4 0.0 0.0 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004027061855670103 0.0 2 0.0 0.0 0.0 0.004027061855670103 0.0 3 0.0 0.0 0.0 0.004027061855670103 0.0 4 0.0 0.0 0.0 0.004027061855670103 0.0 5 0.0 0.0 0.0 0.004027061855670103 0.0 6 0.0 0.0 0.0 0.004027061855670103 0.0 7 0.0 0.0 0.0 0.004027061855670103 0.0 8 0.0 0.0 0.0 0.004027061855670103 0.0 9 0.0 0.0 0.0 0.004027061855670103 0.0 10 0.0 0.0 0.0 0.004027061855670103 0.0 11 0.0 0.0 0.0 0.004027061855670103 0.0 12 0.0 0.0 0.0 0.004027061855670103 0.0 13 0.0 0.0 0.0 0.004027061855670103 0.0 14 0.0 0.0 0.0 0.004027061855670103 0.0 15 0.0 0.0 0.0 0.004027061855670103 0.0 16 0.0 0.0 0.0 0.004027061855670103 0.0 17 0.0 0.0 0.0 0.004027061855670103 0.0 18 0.0 0.0 0.0 0.004027061855670103 0.0 19 0.0 0.0 0.0 0.008054123711340205 0.0 20 0.0 0.0 0.0 0.01208118556701031 0.0 21 0.0 0.0 0.0 0.01610824742268041 0.0 22 0.0 0.0 0.0 0.03221649484536082 0.0 23 0.0 0.0 0.0 0.03221649484536082 0.0 24 0.0 0.0 0.0 0.040270618556701034 0.0 25 0.0 0.0 0.0 0.040270618556701034 0.0 26 0.0 0.0 0.0 0.040270618556701034 0.0 27 0.0 0.0 0.0 0.04832474226804124 0.0 28 0.0 0.0 0.0 0.06040592783505155 0.0 29 0.0 0.0 0.0 0.07248711340206186 0.0 30 0.0 0.0 0.0 0.08456829896907217 0.0 31 0.0 0.0 0.0 0.09262242268041238 0.0 32 0.0 0.0 0.0 0.10470360824742268 0.0 33 0.0 0.0 0.0 0.11678479381443299 0.0 34 0.0 0.0 0.0 0.14497422680412372 0.0 35 0.0 0.0 0.0 0.21746134020618557 0.0 36 0.0 0.0 0.0 0.2416237113402062 0.0 37 0.0 0.0 0.0 0.4067332474226804 0.0 38 0.0 0.0 0.0 0.5396262886597938 0.0 39 0.0 0.0 0.0 0.6604381443298969 0.0 40 0.0 0.0 0.0 0.7691688144329897 0.0 41 0.0 0.0 0.0 1.014819587628866 0.0 42 0.0 0.0 0.0 1.1436855670103092 0.0 43 0.0 0.0 0.0 1.365173969072165 0.0 44 0.0 0.0 0.0 1.643041237113402 0.0 45 0.0 0.0 0.0 1.800096649484536 0.0 46 0.0 0.0 0.0 2.0215850515463916 0.0 47 0.0 0.0 0.0 2.3155605670103094 0.0 48 0.0 0.0 0.0 2.4524806701030926 0.0 49 0.0 0.0 0.0 2.6256443298969074 0.0 50 0.0 0.0 0.0 2.935728092783505 0.0 51 0.0 0.0 0.0 3.1531894329896906 0.0 52 0.0 0.0 0.0 3.3464884020618557 0.0 53 0.0 0.0 0.0 3.636436855670103 0.0 54 0.0 0.0 0.0 3.9747100515463916 0.0 55 0.0 0.0 0.0 4.212306701030927 0.0 56 0.0 0.0 0.0 4.417686855670103 0.0 57 0.0 0.0 0.0 4.639175257731959 0.0 58 0.0 0.0 0.0 4.892880154639175 0.0 59 0.0 0.0 0.0 5.126449742268041 0.0 60 0.0 0.0 0.0 5.287532216494846 0.0 61 0.0 0.0 0.0 5.500966494845361 0.0 62 0.0 0.0 0.0 5.597615979381444 0.0 63 0.0 0.0 0.0 5.770779639175258 0.0 64 0.0 0.0 0.0 5.939916237113402 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATATC 20 7.776901E-5 70.0 38 AGATCTC 30 8.141871E-6 58.333332 40 TATATCT 30 8.141871E-6 58.333332 39 TTCCGCT 25 2.3455557E-4 55.999996 13 GGTCGCC 20 0.006872503 52.5 50 ATGGAGA 20 0.006872503 52.5 45 AAGCAAT 20 0.006872503 52.5 43 GCTGTGT 20 0.006872503 52.5 33 TATACCC 20 0.006872503 52.5 3 CTGATAC 20 0.006872503 52.5 1 GGCCTCA 20 0.006872503 52.5 1 ATACCCA 20 0.006872503 52.5 4 CTGGAGG 20 0.006872503 52.5 45 GTAGATC 35 2.0284258E-5 50.0 38 TCTCGGT 35 2.0284258E-5 50.0 43 TAGATCT 35 2.0284258E-5 50.0 39 GTGTAGA 30 5.7682337E-4 46.666664 36 TACCCCT 35 0.0012321657 40.0 5 ATCTCGG 45 8.9441295E-5 38.88889 42 TGTAGAT 45 8.9441295E-5 38.88889 37 >>END_MODULE