##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779759_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 24832 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.26103414948454 34.0 34.0 34.0 32.0 34.0 2 33.30424452319588 34.0 34.0 34.0 33.0 34.0 3 33.33271585051546 34.0 34.0 34.0 33.0 34.0 4 33.420666881443296 34.0 34.0 34.0 34.0 34.0 5 33.37657055412371 34.0 34.0 34.0 34.0 34.0 6 36.64888047680412 38.0 37.0 38.0 34.0 38.0 7 36.70485663659794 38.0 37.0 38.0 34.0 38.0 8 36.400209407216494 38.0 37.0 38.0 34.0 38.0 9 36.46278994845361 38.0 37.0 38.0 34.0 38.0 10-11 36.30734536082474 38.0 37.0 38.0 34.0 38.0 12-13 36.3271987757732 38.0 37.0 38.0 34.0 38.0 14-15 36.33619925902062 38.0 37.0 38.0 34.0 38.0 16-17 36.13983972293815 38.0 36.0 38.0 33.0 38.0 18-19 36.20521907216495 38.0 36.5 38.0 34.0 38.0 20-21 36.33875644329897 38.0 37.0 38.0 34.0 38.0 22-23 36.172156894329895 38.0 36.5 38.0 33.5 38.0 24-25 36.07321198453609 38.0 36.0 38.0 32.5 38.0 26-27 35.838474548969074 38.0 36.0 38.0 31.5 38.0 28-29 35.71991784793815 38.0 36.0 38.0 31.0 38.0 30-31 35.67288176546391 38.0 36.0 38.0 31.0 38.0 32-33 35.32075547680412 38.0 36.0 38.0 31.0 38.0 34-35 35.15818298969072 38.0 35.5 38.0 29.0 38.0 36-37 35.1069587628866 38.0 35.0 38.0 29.0 38.0 38-39 34.45052754510309 37.0 34.0 38.0 24.5 38.0 40-41 35.257691688144334 38.0 35.5 38.0 29.0 38.0 42-43 35.64408827319588 38.0 36.0 38.0 31.0 38.0 44-45 35.634725354381445 38.0 36.0 38.0 31.0 38.0 46-47 35.64642396907217 38.0 36.0 38.0 31.0 38.0 48-49 35.64374597293815 38.0 36.0 38.0 31.0 38.0 50-51 35.50249677835052 38.0 36.0 38.0 31.0 38.0 52-53 35.58360180412372 38.0 36.0 38.0 31.0 38.0 54-55 35.48904639175258 38.0 36.0 38.0 31.0 38.0 56-57 35.46673646907217 38.0 36.0 38.0 31.0 38.0 58-59 35.33555492912372 38.0 36.0 38.0 30.0 38.0 60-61 35.343629188144334 38.0 36.0 38.0 30.0 38.0 62-63 35.3954574742268 38.0 36.0 38.0 30.5 38.0 64-65 35.46520618556701 38.0 36.0 38.0 31.0 38.0 66-67 35.433070231958766 38.0 36.0 38.0 31.0 38.0 68-69 34.898719394329895 38.0 35.0 38.0 27.0 38.0 70-71 33.69005718427835 37.0 33.5 38.0 22.5 38.0 72-73 32.13830943943299 37.0 29.5 38.0 11.0 38.0 74-75 31.845038659793815 37.0 27.5 38.0 11.0 38.0 76 31.0339481314433 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 3.0 22 4.0 23 8.0 24 21.0 25 42.0 26 96.0 27 137.0 28 268.0 29 461.0 30 655.0 31 970.0 32 1381.0 33 2017.0 34 3000.0 35 3987.0 36 4565.0 37 7216.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.071681701030926 18.053318298969074 13.120167525773196 33.7548324742268 2 19.253382731958762 15.737757731958762 40.8666237113402 24.14223582474227 3 19.664143041237114 21.254832474226802 35.345521907216494 23.735502577319586 4 15.294780927835053 23.328769329896907 30.750644329896907 30.625805412371133 5 15.25853737113402 33.92799613402062 34.902545103092784 15.910921391752577 6 30.239207474226802 35.82876932989691 14.251771907216495 19.680251288659793 7 26.119523195876287 28.680734536082475 16.386114690721648 28.81362757731959 8 22.712628865979383 37.681217783505154 16.38208762886598 23.224065721649485 9 20.469555412371136 16.84519974226804 15.383376288659795 47.30186855670103 10-11 25.972535438144327 23.6730831185567 25.189271907216494 25.165109536082475 12-13 25.197326030927837 15.200144974226804 25.555734536082475 34.04679445876289 14-15 25.65641108247423 16.32973582474227 16.627738402061855 41.38611469072165 16-17 32.02118234536083 24.476481958762886 15.3894168814433 28.11291881443299 18-19 30.998308634020617 20.334648840206185 16.396182345360824 32.27086018041237 20-21 25.306056701030926 18.76610824742268 16.361952319587626 39.565882731958766 22-23 26.457796391752574 24.50265786082474 16.06394974226804 32.97559600515464 24-25 32.009101159793815 25.654397551546392 15.84447487113402 26.49202641752577 26-27 30.825144974226802 26.820231958762886 17.924452319587626 24.43017074742268 28-29 25.577883376288657 25.40270618556701 20.10107925257732 28.91833118556701 30-31 25.747019974226802 18.580863402061855 29.371375644329895 26.300740979381445 32-33 32.12588595360825 16.9519168814433 20.070876288659793 30.851320876288657 34-35 33.090367268041234 17.946601159793815 17.855992268041238 31.107039304123713 36-37 32.76014819587629 23.189835695876287 18.508376288659793 25.54163981958763 38-39 25.233569587628867 19.11243556701031 24.699983891752577 30.954010953608247 40-41 25.187258376288657 17.322406572164947 25.557748067010312 31.932586984536083 42-43 30.796955541237114 17.982844716494846 26.2866462628866 24.933553479381445 44-45 25.332232603092784 22.38442332474227 26.896746134020617 25.386597938144327 46-47 30.63990012886598 17.638530927835053 20.612516108247423 31.10905283505155 48-49 30.589561855670105 16.349871134020617 20.016510953608247 33.04405605670103 50-51 24.355670103092784 16.084085051546392 27.55114368556701 32.009101159793815 52-53 23.157619201030926 16.275370489690722 33.81523840206185 26.751771907216494 54-55 23.993234536082475 16.059922680412374 28.594152706185564 31.35269007731959 56-57 29.413659793814436 16.335776417525775 23.256282216494846 30.99428157216495 58-59 24.44225193298969 19.21311211340206 30.82715850515464 25.517477448453608 60-61 28.632409793814436 27.85921391752577 20.47962306701031 23.028753221649485 62-63 22.223340850515463 36.626127577319586 17.421069587628864 23.729461984536083 64-65 21.432023195876287 38.33561533505155 16.599548969072163 23.6328125 66-67 21.9897712628866 37.36509342783505 16.95997100515464 23.685164304123713 68-69 21.14207474226804 37.884584407216494 17.02440399484536 23.9489368556701 70-71 21.470280283505154 35.61130798969072 17.596246778350515 25.322164948453608 72-73 22.362274484536083 30.716414304123713 19.136597938144327 27.784713273195877 74-75 22.64819587628866 28.300177190721648 19.668170103092784 29.383456829896907 76 23.256282216494846 28.946520618556704 19.418492268041238 28.378704896907216 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.5 19 2.5 20 6.5 21 9.0 22 7.5 23 8.5 24 14.5 25 18.0 26 26.0 27 41.0 28 46.5 29 45.0 30 60.5 31 78.5 32 110.0 33 139.0 34 145.5 35 166.5 36 212.0 37 243.0 38 279.5 39 345.0 40 498.0 41 1104.0 42 1586.0 43 1777.5 44 1830.0 45 1463.5 46 1236.0 47 1043.0 48 764.0 49 619.0 50 560.0 51 531.5 52 486.0 53 507.0 54 545.0 55 559.0 56 604.0 57 666.5 58 698.0 59 725.0 60 798.5 61 910.0 62 975.0 63 988.0 64 1008.0 65 1006.5 66 938.5 67 879.0 68 862.5 69 771.0 70 651.5 71 607.0 72 534.0 73 430.5 74 359.5 75 319.0 76 253.0 77 181.0 78 147.0 79 119.0 80 101.0 81 65.0 82 39.5 83 32.0 84 23.5 85 13.5 86 9.0 87 6.0 88 6.0 89 4.0 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 24832.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.9537693298969 #Duplication Level Percentage of deduplicated Percentage of total 1 79.4282475914615 50.797358247422686 2 15.13128896165229 19.354059278350515 3 3.557710471632769 6.825869845360824 4 0.9823059001322335 2.5128865979381443 5 0.3211384673509225 1.0269007731958764 6 0.1448271519425729 0.5557345360824743 7 0.10704615578364084 0.4792203608247423 8 0.03148416346577672 0.1610824742268041 9 0.01889049807946603 0.10873067010309279 >10 0.18890498079466028 1.9893685567010309 >50 0.03148416346577672 1.3611469072164948 >100 0.0440778288520874 5.368073453608247 >500 0.006296832693155343 2.1826675257731956 >1k 0.006296832693155343 7.276900773195877 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 1807 7.276900773195877 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 542 2.1826675257731956 RNA PCR Primer, Index 30 (95% over 22bp) CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 324 1.3047680412371134 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 258 1.0389819587628866 No Hit CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 233 0.938305412371134 No Hit TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 208 0.8376288659793815 No Hit TTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 106 0.4268685567010309 No Hit CTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 102 0.41076030927835055 No Hit TATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCT 102 0.41076030927835055 RNA PCR Primer, Index 30 (95% over 21bp) TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 87 0.350354381443299 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 76 0.30605670103092786 No Hit CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 67 0.2698131443298969 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 57 0.2295425257731959 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 51 0.20538015463917528 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAGCTCGTATGCCGT 41 0.16510953608247422 No Hit TCTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 35 0.1409471649484536 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT 35 0.1409471649484536 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCG 30 0.1208118556701031 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.004027061855670103 0.0 6 0.0 0.0 0.0 0.004027061855670103 0.0 7 0.0 0.0 0.0 0.004027061855670103 0.0 8 0.0 0.0 0.0 0.004027061855670103 0.0 9 0.0 0.0 0.0 0.004027061855670103 0.0 10 0.0 0.0 0.0 0.004027061855670103 0.0 11 0.0 0.0 0.0 0.004027061855670103 0.0 12 0.0 0.0 0.0 0.004027061855670103 0.0 13 0.0 0.0 0.0 0.004027061855670103 0.0 14 0.0 0.0 0.0 0.008054123711340205 0.0 15 0.0 0.0 0.0 0.008054123711340205 0.0 16 0.0 0.0 0.0 0.008054123711340205 0.0 17 0.0 0.0 0.0 0.008054123711340205 0.0 18 0.0 0.0 0.0 0.008054123711340205 0.0 19 0.0 0.0 0.0 0.01208118556701031 0.0 20 0.0 0.0 0.0 0.01610824742268041 0.0 21 0.0 0.0 0.0 0.020135309278350517 0.0 22 0.0 0.0 0.0 0.02416237113402062 0.0 23 0.0 0.0 0.0 0.02416237113402062 0.0 24 0.0 0.0 0.0 0.02416237113402062 0.0 25 0.0 0.0 0.0 0.028189432989690722 0.0 26 0.0 0.0 0.0 0.028189432989690722 0.0 27 0.0 0.0 0.0 0.03624355670103093 0.0 28 0.0 0.0 0.0 0.04832474226804124 0.0 29 0.0 0.0 0.0 0.07248711340206186 0.0 30 0.0 0.0 0.0 0.08859536082474227 0.0 31 0.0 0.0 0.0 0.11275773195876289 0.0 32 0.0 0.0 0.0 0.11678479381443299 0.0 33 0.0 0.0 0.0 0.1328930412371134 0.0 34 0.0 0.0 0.0 0.19329896907216496 0.0 35 0.0 0.0 0.0 0.28994845360824745 0.0 36 0.0 0.0 0.0 0.41881443298969073 0.0 37 0.0 0.0 0.0 0.6523840206185567 0.0 38 0.0 0.0 0.0 0.9020618556701031 0.0 39 0.0 0.0 0.0 1.0711984536082475 0.0 40 0.0 0.0 0.0 1.2282538659793814 0.0 41 0.0 0.0 0.0 1.5504188144329898 0.0 42 0.0 0.0 0.0 1.755798969072165 0.0 43 0.0 0.0 0.0 2.037693298969072 0.0 44 0.0 0.0 0.0 2.3961018041237114 0.0 45 0.0 0.0 0.0 2.734375 0.0 46 0.0 0.0 0.0 3.12097293814433 0.0 47 0.0 0.0 0.0 3.4995167525773194 0.0 48 0.0 0.0 0.0 3.8176546391752577 0.0 49 0.0 0.0 0.0 4.172036082474227 0.0 50 0.0 0.0 0.0 4.558634020618556 0.0 51 0.0 0.0 0.0 4.808311855670103 0.0 52 0.0 0.0 0.0 5.08617912371134 0.0 53 0.0 0.0 0.0 5.392235824742268 0.0 54 0.0 0.0 0.0 5.734536082474227 0.0 55 0.0 0.0 0.0 6.048646907216495 0.0 56 0.0 0.0 0.0 6.334568298969073 0.0 57 0.0 0.0 0.0 6.66076030927835 0.0 58 0.0 0.0 0.0 7.05138530927835 0.0 59 0.0 0.0 0.0 7.373550257731959 0.0 60 0.0 0.0 0.0 7.740012886597938 0.0 61 0.0 0.0 0.0 8.078286082474227 0.0 62 0.0 0.0 0.0 8.360180412371134 0.0 63 0.0 0.0 0.0 8.710534793814434 0.0 64 0.0 0.0 0.0 9.016591494845361 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCCATG 15 0.002199255 70.0 63 TTACACA 30 9.8354576E-8 70.0 3 ATTGCAG 15 0.002199255 70.0 26 GCTTGAC 20 7.776901E-5 70.0 56 CTTGACA 15 0.002199255 70.0 57 TCTTTAT 35 3.5179255E-9 70.0 1 CTTTACA 35 2.8581053E-7 60.0 1 TTTACAC 35 2.8581053E-7 60.0 2 AAACAAC 20 0.006872503 52.5 69 AACTCGT 20 0.006872503 52.5 37 CGGAACT 20 0.006872503 52.5 34 TTGACAA 20 0.006872503 52.5 58 CTTTATA 50 5.878246E-8 48.999996 2 TTTATAC 55 1.2444434E-7 44.545452 3 CGCTTGA 35 0.0012321657 40.0 55 CTATACA 45 8.9441295E-5 38.88889 1 GCCGGAA 40 0.002374231 35.0 32 CTTATAC 520 0.0 34.326923 1 GAAAAAA 520 0.0 33.653847 60 CCGTCTT 520 0.0 33.653847 47 >>END_MODULE