##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779757_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 63964 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.38101119379651 34.0 32.0 34.0 21.0 34.0 2 28.334860233881557 34.0 23.0 34.0 12.0 34.0 3 27.47933212431993 33.0 23.0 34.0 11.0 34.0 4 30.095835157275967 34.0 31.0 34.0 21.0 34.0 5 29.415483709586642 34.0 27.0 34.0 11.0 34.0 6 32.136905134137955 37.0 31.0 38.0 12.0 38.0 7 33.12553936589332 37.0 34.0 38.0 21.0 38.0 8 32.41207554249265 37.0 31.0 38.0 12.0 38.0 9 33.87188105809518 38.0 34.0 38.0 21.0 38.0 10-11 33.581225376774434 38.0 34.0 38.0 21.0 38.0 12-13 32.452504533800266 37.5 30.5 38.0 16.0 38.0 14-15 32.69272559564755 37.0 32.5 38.0 16.0 38.0 16-17 32.32189200175098 37.5 30.0 38.0 16.0 38.0 18-19 32.80383496967044 37.0 32.5 38.0 16.0 38.0 20-21 31.846702832843476 36.5 30.0 38.0 16.0 38.0 22-23 31.82479207053968 36.5 28.5 38.0 16.0 38.0 24-25 33.28343286848852 37.0 33.0 38.0 21.0 38.0 26-27 31.537145894565693 37.0 27.5 38.0 11.0 38.0 28-29 33.90553279969983 37.5 34.5 38.0 21.5 38.0 30-31 34.40654117941342 38.0 36.0 38.0 23.0 38.0 32-33 34.49528641110625 38.0 36.0 38.0 23.0 38.0 34-35 34.53953004815209 38.0 36.0 38.0 23.5 38.0 36-37 32.26334344318679 37.0 30.0 38.0 16.0 38.0 38-39 30.2176380464011 35.0 24.0 38.0 11.0 38.0 40-41 31.78652835970233 36.5 29.0 38.0 11.0 38.0 42-43 32.959649177662435 37.0 30.5 38.0 17.0 38.0 44-45 34.59693733975361 38.0 36.0 38.0 25.0 38.0 46-47 32.97806578700519 37.5 31.5 38.0 18.0 38.0 48-49 32.33605621912326 37.0 30.0 38.0 17.0 38.0 50-51 30.09619473453818 35.5 23.5 38.0 11.0 38.0 52-53 33.78660652867238 37.0 34.5 38.0 22.0 38.0 54-55 32.75627696829467 37.0 30.5 38.0 17.0 38.0 56-57 33.15859702332562 37.5 31.5 38.0 17.0 38.0 58-59 34.39455787630542 38.0 35.0 38.0 23.5 38.0 60-61 34.8010287036458 38.0 37.0 38.0 24.5 38.0 62-63 34.73022325057845 38.0 36.5 38.0 24.5 38.0 64-65 34.39129823025452 38.0 36.0 38.0 23.0 38.0 66-67 32.354699518479144 37.5 31.0 38.0 11.0 38.0 68-69 32.370090988681135 37.0 31.0 38.0 11.0 38.0 70-71 31.732396347945716 37.0 28.5 38.0 11.0 38.0 72-73 30.565966793821524 36.5 25.0 38.0 11.0 38.0 74-75 32.82799699831155 37.0 30.5 38.0 17.0 38.0 76 33.61334500656619 37.0 34.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 8.0 13 89.0 14 209.0 15 331.0 16 595.0 17 826.0 18 1082.0 19 1110.0 20 987.0 21 745.0 22 704.0 23 665.0 24 605.0 25 625.0 26 696.0 27 922.0 28 1112.0 29 1358.0 30 1847.0 31 2520.0 32 3534.0 33 5282.0 34 7722.0 35 10998.0 36 12779.0 37 6611.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.115189794259265 19.787693077356014 12.13964104808955 29.957476080295166 2 20.6631855418673 17.300356450503408 38.543555750109434 23.492902257519855 3 20.25201675942718 18.544806453630166 35.25107873178663 25.952098055156025 4 13.476330435870176 18.916890751047465 34.42717778750547 33.179601025576886 5 13.65455568757426 30.132574573197424 39.74892126821337 16.463948471014948 6 26.25226690013132 33.66424863985992 17.853792758426614 22.22969170158214 7 26.070914889625413 28.38627978237759 20.658495403664563 24.884309924332438 8 22.243762116190357 31.739728597336004 19.10605965855794 26.9104496279157 9 22.82221249452817 16.381089362766556 20.089425301732224 40.70727284097305 10-11 23.421768494778313 24.50519041961103 27.570195735100995 24.50284535050966 12-13 23.43349384028516 21.118128947532988 29.279751109999374 26.16862610218248 14-15 22.382902882871615 23.51244450003127 24.436401725970857 29.668250891126256 16-17 23.420986805077856 24.59117628666125 26.73925958351573 25.24857732474517 18-19 21.044650115690075 24.63964104808955 28.51291351385154 25.802795322368834 20-21 22.901944843974736 24.681852291914204 27.939934963416924 24.47626790069414 22-23 23.21071227565506 23.700831717841286 28.37689950597211 24.711556500531547 24-25 21.28384716402977 26.448471014945905 25.43383778375336 26.833844037270964 26-27 21.975642548933774 24.93277468576074 28.407385404289915 24.684197361015574 28-29 21.619973735226065 26.121724720155086 27.456069038834347 24.802232505784506 30-31 21.473797761240697 26.326527421674694 27.09414670752298 25.105528109561632 32-33 21.630135701331998 26.17487961978613 27.000343943468202 25.19464073541367 34-35 21.734882121193174 25.874710774810833 27.185604402476393 25.204802701519608 36-37 22.506409855543744 24.015070977424802 30.55390532174348 22.924613845287976 38-39 22.56738165217935 23.055937714964667 32.908354699518476 21.468325933337503 40-41 21.977987618035144 24.180007504221123 26.491463948471015 27.350540929272714 42-43 20.395847664311177 25.046119692326936 27.36070289537865 27.19732974798324 44-45 20.736664373710212 24.960133825276717 28.660652867237822 25.64254893377525 46-47 22.123381902320055 23.94393721468326 29.443124257394786 24.489556625601903 48-49 22.300043774623227 24.25504971546495 29.51503970983678 23.929866800075043 50-51 23.315458695516227 22.6330435870177 31.61231317616159 22.43918454130448 52-53 20.25670689762992 25.00469013820274 29.042117441060594 25.696485523106748 54-55 21.437840035019697 24.44969045087862 28.92642736539303 25.186042148708648 56-57 21.326840097554875 24.761584641360766 28.518385341754737 25.39318991932962 58-59 19.708742417609905 25.78794321806016 28.68410355825152 25.81921080607842 60-61 19.545369270214497 25.5464011006191 28.41911074979676 26.489118879369645 62-63 19.308517290976173 25.73557000812957 28.587955725095366 26.36795697579889 64-65 20.01203802138703 26.137358514164216 27.474047901944843 26.376555562503906 66-67 19.117003314364332 25.09849290225752 25.12116190357076 30.663341879807394 68-69 19.091136509326287 25.553088697446803 25.48116762300849 29.87460717021842 70-71 19.471890438371585 25.15008442248765 24.80145081608405 30.57657432305672 72-73 19.44062285035332 24.25739478456632 23.983803389406543 32.31817897567382 74-75 20.79763617034582 25.882527671815396 25.656619348383465 27.66321680945532 76 21.899818647989495 25.196985804515037 26.103745857044586 26.799449690450878 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 2.0 16 10.0 17 16.0 18 13.5 19 20.0 20 39.0 21 49.0 22 63.0 23 86.5 24 120.0 25 144.0 26 187.0 27 281.5 28 394.0 29 455.0 30 550.0 31 746.5 32 957.5 33 1067.0 34 1222.5 35 1526.0 36 1819.5 37 1965.0 38 2188.0 39 2624.5 40 3048.0 41 3387.5 42 3517.0 43 3574.5 44 3722.5 45 3809.5 46 3806.0 47 3781.0 48 3669.5 49 3417.0 50 3251.0 51 3110.0 52 2743.0 53 2281.5 54 2046.0 55 1933.5 56 1693.5 57 1430.5 58 1295.0 59 1203.5 60 1023.0 61 890.5 62 847.0 63 787.5 64 690.5 65 619.5 66 596.0 67 606.0 68 569.0 69 521.0 70 481.0 71 452.0 72 437.5 73 389.0 74 321.0 75 287.0 76 270.5 77 207.0 78 149.5 79 139.0 80 117.0 81 87.0 82 59.0 83 39.0 84 32.5 85 26.0 86 16.5 87 7.0 88 5.5 89 3.0 90 2.0 91 2.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.007816897004565067 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 63964.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 97.34850853605153 #Duplication Level Percentage of deduplicated Percentage of total 1 97.89137277574356 95.29579138265274 2 1.7280143894135027 3.364392470764805 3 0.27140746450825465 0.7926333562628979 4 0.051390762510438746 0.20011256331686575 5 0.024089419926768163 0.11725345506847602 6 0.014453651956060899 0.08442248764930273 7 0.011241729299158476 0.07660559064473767 8 0.004817883985353632 0.037521105621912326 9 0.0016059613284512108 0.014070414608217122 >10 0.0016059613284512108 0.01719717341004315 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.004690138202739041 0.0 12 0.0 0.0 0.0 0.004690138202739041 0.0 13 0.0 0.0 0.0 0.004690138202739041 0.0 14 0.0 0.0 0.0 0.004690138202739041 0.0 15 0.0 0.0 0.0 0.004690138202739041 0.0 16 0.0 0.0 0.0 0.004690138202739041 0.0 17 0.0 0.0 0.0 0.004690138202739041 0.0 18 0.0 0.0 0.0 0.004690138202739041 0.0 19 0.0 0.0 0.0 0.010943655806391095 0.0 20 0.0 0.0 0.0 0.010943655806391095 0.0 21 0.0 0.0 0.0 0.010943655806391095 0.0 22 0.0 0.0 0.0 0.02657744981552123 0.0 23 0.0 0.0 0.0 0.028140829216434245 0.0 24 0.0 0.0 0.0 0.02970420861734726 0.0 25 0.0 0.0 0.0 0.02970420861734726 0.0 26 0.0 0.0 0.0 0.03283096741917328 0.0 27 0.0 0.0 0.0 0.040647864423738356 0.0 28 0.0 0.0 0.0 0.04377462322556438 0.0 29 0.0 0.0 0.0 0.054718279031955475 0.0 30 0.0 0.0 0.0 0.06566193483834656 0.0 31 0.0 0.0 0.0 0.07660559064473767 0.0 32 0.0 0.0 0.0 0.08598586705021574 0.0 33 0.0 0.0 0.0 0.09536614345569383 0.0 34 0.0 0.0 0.0 0.10787317866299793 0.0 35 0.0 0.0 0.0 0.13914076668125822 0.0 36 0.0 0.0 0.0 0.16728159589769245 0.0 37 0.0 0.0 0.0 0.29235194797073355 0.0 38 0.0 0.0 0.0 0.42992933525107874 0.0 39 0.0 0.0 0.0 0.6237883809642925 0.0 40 0.0 0.0 0.0 0.8489150146957664 0.0 41 0.0 0.0 0.0 1.1756613094865862 0.0 42 0.0 0.0 0.0 1.5555625039084484 0.0 43 0.0 0.0 0.0 1.9026327309111375 0.0 44 0.0 0.0 0.0 2.293477581139391 0.0 45 0.0 0.0 0.0 2.5576886998936903 0.0 46 0.0 0.0 0.0 2.909449065099118 0.0 47 0.0 0.0 0.0 3.350322056156588 0.0 48 0.0 0.0 0.0 3.6551810393346256 0.0 49 0.0 0.0 0.0 3.903758364079795 0.0 50 0.0 0.0 0.0 4.360265149146395 0.0 51 0.0 0.0 0.0 4.848039522231255 0.0 52 0.0 0.0 0.0 5.262335063473204 0.0 53 0.0 0.0 0.0 5.856419235820149 0.0 54 0.0 0.0 0.0 6.366080920517791 0.0 55 0.0 0.0 0.0 6.742855356137827 0.0 56 0.0 0.0 0.0 7.100869238946908 0.0 57 0.0 0.0 0.0 7.4041648427240325 0.0 58 0.0 0.0 0.0 7.712150584703896 0.0 59 0.0 0.0 0.0 8.037333500093803 0.0 60 0.0 0.0 0.0 8.282784066037145 0.0 61 0.0 0.0 0.0 8.52354449377775 0.0 62 0.0 0.0 0.0 8.718966918891876 0.0 63 0.0 0.0 0.0 8.975361140641612 0.0 64 0.0 0.0 0.0 9.230191982990432 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGAT 15 0.0022152828 70.00001 35 CGACTAG 15 0.0022152828 70.00001 22 CCGTATC 30 8.290328E-6 58.333336 55 CGTATCA 25 2.3739437E-4 55.999996 56 CGCCGTA 25 2.3739437E-4 55.999996 53 TCGGTGG 50 9.567884E-10 55.999996 45 GCCGTAT 25 2.3739437E-4 55.999996 54 CGGTGGT 45 2.6499038E-8 54.444443 46 AGTGTAG 45 2.6499038E-8 54.444443 35 CTTGTCA 20 0.006922205 52.5 1 GTACATC 20 0.006922205 52.5 38 CCGATGC 20 0.006922205 52.5 15 CGGCATC 20 0.006922205 52.5 51 TCTTAAC 20 0.006922205 52.5 67 GTATATT 20 0.006922205 52.5 10 GCTCCGG 20 0.006922205 52.5 11 GCCGACT 30 5.837623E-4 46.666668 20 CAGTGTA 30 5.837623E-4 46.666668 34 TCGCCGT 45 1.6607664E-6 46.666664 52 ATCTCGG 45 1.6607664E-6 46.666664 42 >>END_MODULE