SRR1779757_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779757_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63964
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	2573	4.022575198549184	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	550	0.8598586705021574	RNA PCR Primer, Index 24 (95% over 23bp)
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	321	0.5018447876930774	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	320	0.5002814082921643	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	274	0.4283659558501657	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	196	0.30642236257895067	RNA PCR Primer, Index 24 (95% over 21bp)
TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT	117	0.1829153899068226	RNA PCR Primer, Index 24 (95% over 22bp)
CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	104	0.16259145769495342	No Hit
TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	104	0.16259145769495342	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	101	0.15790131949221436	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	81	0.1266337314739541	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	78	0.12194359327121507	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	77	0.12038021387030205	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCTCG	15	0.0022152828	70.00001	11
CTCGGGG	15	0.0022152828	70.00001	14
ATTGCTC	15	0.0022152828	70.00001	10
CCCGACG	15	0.0022152828	70.00001	17
GGCATGC	20	0.006922205	52.5	6
ATTGAGA	20	0.006922205	52.5	4
GATTGCT	30	5.837623E-4	46.666668	9
AGCGTCA	45	9.104788E-5	38.888885	3
CAGCGTC	50	1.6925215E-4	35.0	2
ATAGCAC	40	0.0024024472	35.0	29
TCAGATG	50	1.6925215E-4	35.0	7
GCAGCGT	40	0.0024024472	35.0	1
CGTCAGA	50	1.6925215E-4	35.0	5
GAGGGAT	40	0.0024024472	35.0	40
CACCCTT	40	0.0024024472	35.0	5
CCACAGG	40	0.0024024472	35.0	1
ATCTCGT	615	0.0	34.715446	37
TCTCGTA	615	0.0	34.715446	38
CTTGAAA	635	0.0	34.17323	57
CATCTCG	615	0.0	34.14634	36