##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779756_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 33249 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.27017353905381 34.0 34.0 34.0 32.0 34.0 2 33.29252007579176 34.0 34.0 34.0 33.0 34.0 3 33.3664170350988 34.0 34.0 34.0 33.0 34.0 4 33.42286986074769 34.0 34.0 34.0 34.0 34.0 5 33.378988841769676 34.0 34.0 34.0 34.0 34.0 6 36.62534211555235 38.0 37.0 38.0 34.0 38.0 7 36.7809558182201 38.0 37.0 38.0 34.0 38.0 8 36.40533549881199 38.0 37.0 38.0 34.0 38.0 9 36.503804625703026 38.0 37.0 38.0 34.0 38.0 10-11 36.380838521459296 38.0 37.0 38.0 34.0 38.0 12-13 36.37104875334596 38.0 37.0 38.0 34.0 38.0 14-15 36.409741646365305 38.0 37.0 38.0 34.0 38.0 16-17 36.21202141417787 38.0 37.0 38.0 33.5 38.0 18-19 36.22345032933321 38.0 37.0 38.0 34.0 38.0 20-21 36.35434148395441 38.0 37.0 38.0 34.0 38.0 22-23 36.219390056843814 38.0 37.0 38.0 34.0 38.0 24-25 36.14901200036091 38.0 36.0 38.0 33.5 38.0 26-27 35.98261601852687 38.0 36.0 38.0 32.0 38.0 28-29 35.79435471743511 38.0 36.0 38.0 31.5 38.0 30-31 35.584829618935906 38.0 36.0 38.0 31.0 38.0 32-33 35.572107431802465 38.0 36.0 38.0 31.0 38.0 34-35 35.28979818941923 38.0 36.0 38.0 29.0 38.0 36-37 35.45196848025505 38.0 36.0 38.0 31.0 38.0 38-39 35.05209179223435 38.0 35.5 38.0 27.0 38.0 40-41 35.65072633763421 38.0 36.0 38.0 31.0 38.0 42-43 35.88250774459382 38.0 36.0 38.0 32.0 38.0 44-45 35.88201148906734 38.0 36.0 38.0 32.0 38.0 46-47 35.87076303046708 38.0 36.0 38.0 32.0 38.0 48-49 35.83262654515926 38.0 36.0 38.0 31.5 38.0 50-51 35.74636831182893 38.0 36.0 38.0 31.0 38.0 52-53 35.809076964720745 38.0 36.0 38.0 31.0 38.0 54-55 35.76746669072754 38.0 36.0 38.0 31.0 38.0 56-57 35.72899936840206 38.0 36.0 38.0 31.0 38.0 58-59 35.62113146260038 38.0 36.0 38.0 31.0 38.0 60-61 35.62726698547325 38.0 36.0 38.0 31.0 38.0 62-63 35.68376492526092 38.0 36.0 38.0 31.0 38.0 64-65 35.695810400312794 38.0 36.0 38.0 31.0 38.0 66-67 35.62436464254564 38.0 36.0 38.0 31.0 38.0 68-69 35.170065265120755 38.0 36.0 38.0 28.0 38.0 70-71 33.91505007669404 37.5 34.5 38.0 23.0 38.0 72-73 32.22059310054438 37.0 30.0 38.0 11.0 38.0 74-75 31.932449096213418 37.0 28.0 38.0 11.0 38.0 76 31.251586513880117 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 0.0 21 4.0 22 4.0 23 14.0 24 22.0 25 44.0 26 99.0 27 165.0 28 328.0 29 454.0 30 719.0 31 1176.0 32 1639.0 33 2553.0 34 3800.0 35 5585.0 36 6532.0 37 10109.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.570934464194416 19.041174170651747 13.759812325182713 33.62807903997113 2 18.196035971006648 17.441126048903726 42.554663298144305 21.80817468194532 3 17.089235766489217 22.857830310686037 39.09892026827875 20.954013654546003 4 13.230473096935247 26.79178321152516 34.54239225239857 25.435351439141023 5 12.80038497398418 35.736413125206774 38.74101476736143 12.722187133447624 6 25.41730578363259 41.706517489247794 16.67719329904659 16.198983428073024 7 23.36611627417366 29.826460946193873 19.784053655749045 27.023369123883423 8 20.38256789677885 41.387710908598756 17.579476074468406 20.65024512015399 9 21.071310415350837 18.538903425666938 17.173448825528588 43.21633733345364 10-11 22.33450630094138 27.122620229179823 28.456494932178412 22.086378537700384 12-13 22.475863935757467 18.373484916839605 29.03545971307408 30.115191434328853 14-15 22.585641673433788 19.59758188216187 20.00511293572739 37.81166350867695 16-17 28.960269481788924 27.460976269963005 18.863725224818793 24.715029023429278 18-19 27.781286655237754 23.370627688050767 19.794580288128966 29.053505368582517 20-21 21.990135041655385 21.68787031188908 19.430659568708833 36.8913350777467 22-23 23.823272880387382 28.21137477818882 19.123883425065415 28.841468916358387 24-25 28.915155343017833 29.283587476315077 19.734428103100846 22.06682907756624 26-27 27.882041565159852 30.418959968720866 21.438238744022375 20.260759722096903 28-29 21.0036392071942 23.672892417817078 28.727179764804955 26.596288610183766 30-31 21.054768564468105 26.262443983277695 25.794760744684055 26.888026707570152 32-33 21.414177870011127 23.860867996029956 33.42656922012692 21.298384913831995 34-35 27.187283828085057 29.793377244428402 24.865409485999578 18.153929441486962 36-37 21.929982856627266 35.98754849769918 22.087882342326086 19.994586303347468 38-39 20.720923937562034 23.83831092664441 28.615898222502935 26.824866913290624 40-41 21.426208307016754 20.46678095581822 29.939246293121595 28.16776444404343 42-43 27.851965472645794 20.769045685584526 30.261060483022046 21.11792835874763 44-45 21.923967638124456 26.462449998496197 30.429486601100784 21.184095762278567 46-47 28.205359559686006 20.132936328912148 24.054858792745645 27.606845318656198 48-49 27.682035549941354 18.80357303979067 23.812746248007457 29.70164516226052 50-51 21.442750157899486 19.451712833468676 30.643026857950616 28.462510150681226 52-53 19.874281933291225 19.271256278384314 38.159042377214355 22.69541941111011 54-55 20.254744503594093 19.63818460705585 32.77542181719751 27.331649072152548 56-57 26.80832506240789 19.391560648440553 26.418839664350806 27.381274624800746 58-59 21.46079581340792 22.157057355108424 35.03413636500346 21.348010466480194 60-61 25.892508045354745 30.56482901741406 24.00824084934885 19.53442208788234 62-63 18.707329543745676 40.89897440524527 20.681825017293754 19.7118710337153 64-65 18.56597190892959 42.283978465517755 19.60810851454179 19.541941111010857 66-67 18.735901831634035 41.37417666696743 19.857740082408494 20.032181418990046 68-69 18.40205720472796 41.16514782399471 19.98105206171614 20.45174290956119 70-71 18.86222142019309 38.59364191404253 20.997623988691387 21.546512677072997 72-73 19.217119311859005 34.28674546602905 21.859304039219225 24.636831182892717 74-75 19.19456224247346 32.85963487623688 23.39168095281061 24.554121928479052 76 19.30584378477548 32.49421035219105 23.66386959006286 24.536076272970618 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.5 16 3.0 17 3.0 18 4.5 19 6.5 20 7.0 21 7.0 22 14.5 23 24.5 24 38.0 25 49.0 26 75.0 27 97.0 28 120.5 29 148.0 30 174.0 31 230.5 32 348.5 33 436.0 34 483.5 35 583.0 36 801.5 37 968.0 38 1782.0 39 2975.0 40 3180.5 41 2666.0 42 2325.0 43 2128.0 44 1866.0 45 1707.5 46 1614.0 47 1601.5 48 1452.0 49 1239.5 50 1164.0 51 1072.0 52 873.5 53 756.5 54 746.0 55 661.5 56 527.5 57 430.0 58 382.0 59 340.0 60 309.5 61 317.0 62 313.0 63 310.5 64 319.0 65 330.0 66 330.0 67 330.0 68 352.5 69 375.5 70 365.5 71 355.0 72 342.5 73 313.0 74 304.5 75 313.0 76 287.0 77 223.5 78 170.0 79 154.0 80 122.5 81 83.0 82 57.5 83 40.0 84 31.0 85 17.5 86 8.0 87 3.0 88 4.0 89 3.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 33249.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.353454239225236 #Duplication Level Percentage of deduplicated Percentage of total 1 71.0116619750675 37.17705795663028 2 16.125696558855633 16.884718337393608 3 6.629516861032918 10.41234322836777 4 2.8092146837479173 5.882883695750248 5 1.338541965875797 3.503864777888057 6 0.7295915436318723 2.2917982495714155 7 0.37915781007640603 1.3895154741495985 8 0.2700063192968346 1.1308610785286775 9 0.17234445912563912 0.8120544978796355 >10 0.4538404090308497 3.2843093025354144 >50 0.02297926121675188 0.893259947667599 >100 0.04595852243350376 5.816716292219315 >500 0.00574481530418797 1.9759992781737796 >1k 0.00574481530418797 8.544617883244609 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 2841 8.544617883244609 No Hit ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT 657 1.9759992781737796 TruSeq Adapter, Index 12 (95% over 23bp) TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 422 1.269211104093356 No Hit CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 388 1.1669523895455503 TruSeq Adapter, Index 12 (95% over 21bp) CTTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 303 0.9113056031760355 RNA PCR Primer, Index 12 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 301 0.9052903846732232 No Hit CTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 144 0.43309573220247227 No Hit TATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCT 139 0.418057685945442 RNA PCR Primer, Index 12 (95% over 22bp) TTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 125 0.37595115642575716 TruSeq Adapter, Index 12 (95% over 21bp) TCTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 112 0.3368522361574784 No Hit CTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 90 0.2706848326265452 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 81 0.24361634936389065 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGT 65 0.19549460134139374 No Hit TCTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 61 0.1834641643357695 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATATCGTATGCCGT 41 0.12331197930764835 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAACTCGTATGCCGT 40 0.1203043700562423 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.009022827754218171 0.0 5 0.0 0.0 0.0 0.009022827754218171 0.0 6 0.0 0.0 0.0 0.009022827754218171 0.0 7 0.0 0.0 0.0 0.009022827754218171 0.0 8 0.0 0.0 0.0 0.009022827754218171 0.0 9 0.0 0.0 0.0 0.009022827754218171 0.0 10 0.0 0.0 0.0 0.009022827754218171 0.0 11 0.0 0.0 0.0 0.009022827754218171 0.0 12 0.0 0.0 0.0 0.009022827754218171 0.0 13 0.0 0.0 0.0 0.009022827754218171 0.0 14 0.0 0.0 0.0 0.01203043700562423 0.0 15 0.0 0.0 0.0 0.01203043700562423 0.0 16 0.0 0.0 0.0 0.01203043700562423 0.0 17 0.0 0.0 0.0 0.01203043700562423 0.0 18 0.0 0.0 0.0 0.01203043700562423 0.0 19 0.0 0.0 0.0 0.02406087401124846 0.0 20 0.0 0.0 0.0 0.027068483262654517 0.0 21 0.0 0.0 0.0 0.030076092514060574 0.0 22 0.0 0.0 0.0 0.030076092514060574 0.0 23 0.0 0.0 0.0 0.030076092514060574 0.0 24 0.0 0.0 0.0 0.030076092514060574 0.0 25 0.0 0.0 0.0 0.030076092514060574 0.0 26 0.0 0.0 0.0 0.030076092514060574 0.0 27 0.0 0.0 0.0 0.05112935727390298 0.0 28 0.0 0.0 0.0 0.05714457577671509 0.0 29 0.0 0.0 0.0 0.06917501278233931 0.0 30 0.0 0.0 0.0 0.07819784053655748 0.0 31 0.0 0.0 0.0 0.08722066829077567 0.0 32 0.0 0.0 0.0 0.10526632379921201 0.0 33 0.0 0.0 0.0 0.1323348070618665 0.0 34 0.0 0.0 0.0 0.1985022105927998 0.0 35 0.0 0.0 0.0 0.27970766038076333 0.0 36 0.0 0.0 0.0 0.3879815934313814 0.0 37 0.0 0.0 0.0 0.6225751150410539 0.0 38 0.0 0.0 0.0 0.781978405365575 0.0 39 0.0 0.0 0.0 1.0135643177238414 0.0 40 0.0 0.0 0.0 1.2692111040933562 0.0 41 0.0 0.0 0.0 1.530873108965683 0.0 42 0.0 0.0 0.0 1.8226112063520707 0.0 43 0.0 0.0 0.0 2.1684862702637675 0.0 44 0.0 0.0 0.0 2.5594754729465548 0.0 45 0.0 0.0 0.0 2.947457066377936 0.0 46 0.0 0.0 0.0 3.305362567295257 0.0 47 0.0 0.0 0.0 3.720412643989293 0.0 48 0.0 0.0 0.0 4.117417065174893 0.0 49 0.0 0.0 0.0 4.469307347589401 0.0 50 0.0 0.0 0.0 4.7881139282384435 0.0 51 0.0 0.0 0.0 5.097897681133267 0.0 52 0.0 0.0 0.0 5.485879274564649 0.0 53 0.0 0.0 0.0 5.84378477548197 0.0 54 0.0 0.0 0.0 6.17161418388523 0.0 55 0.0 0.0 0.0 6.418238142500527 0.0 56 0.0 0.0 0.0 6.770128424915035 0.0 57 0.0 0.0 0.0 7.100965442569701 0.0 58 0.0 0.0 0.0 7.392703539956089 0.0 59 0.0 0.0 0.0 7.687449246593882 0.0 60 0.0 0.0 0.0 7.997232999488706 0.0 61 0.0 0.0 0.0 8.294986315377907 0.0 62 0.0 0.0 0.0 8.664922253300851 0.0 63 0.0 0.0 0.0 9.055911455983638 0.0 64 0.0 0.0 0.0 9.389756082889711 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTTTAT 15 0.002205871 70.0 48 CCATCTA 15 0.002205871 70.0 13 CGAGACA 20 7.8159406E-5 70.0 23 CTATACA 75 0.0 60.666668 1 TCTTTAT 35 2.8882278E-7 60.0 1 CTTAATA 25 2.3572598E-4 56.000004 2 TTAATAC 25 2.3572598E-4 56.000004 3 CTTTATT 20 0.0068930183 52.5 49 CTTTATA 40 7.264607E-7 52.5 2 CCCACCC 20 0.0068930183 52.5 3 GCGTCAG 20 0.0068930183 52.5 1 AATACAC 30 5.796844E-4 46.666664 5 TTTACAC 30 5.796844E-4 46.666664 2 TTTATAC 45 1.6365011E-6 46.666664 3 TTCTGCT 755 0.0 41.258278 52 TGCTTGA 755 0.0 41.258278 55 ATCTCGT 715 0.0 41.11888 37 TCTCGTA 715 0.0 41.11888 38 CTGCTTG 750 0.0 41.06667 54 TCGTATG 770 0.0 40.90909 40 >>END_MODULE