FastQCFastQC Report
Wed 25 May 2016
SRR1779755_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779755_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130360
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATCTT150.002220518469.9996244
GCTCTAA200.00693843852.49971413
GTATGCC200.00693843852.49971411
TCTAAGG200.00693843852.4997143
CGGTCCA200.00693843852.49971452
TATACGC200.00693843852.49971452
GATCTCG506.145092E-848.99973341
GTAGCTC305.8602943E-446.6664138
CTCGGTG900.046.6664144
TCTCGGT851.8189894E-1245.2938743
ATCTCGG551.3007048E-744.5452142
GTGTTCG503.4572422E-641.9997748
CAGCTGA602.5763256E-740.83310755
ACTTGGA350.00125171239.9997817
CCAGAGT350.00125171239.9997828
TTAGTCT350.00125171239.9997838
TAGATCT701.9059371E-839.9997839
GAGTCTA459.1573726E-538.88867634
TCTTACG459.1573726E-538.88867654
ACCAGAG459.1573726E-538.88867627
Produced by FastQC (version 0.11.5)