##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779755_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 130360 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.41642374961645 34.0 34.0 34.0 33.0 34.0 2 33.425843817121816 34.0 34.0 34.0 34.0 34.0 3 33.45492482356551 34.0 34.0 34.0 34.0 34.0 4 33.50820036821111 34.0 34.0 34.0 34.0 34.0 5 33.499754525928196 34.0 34.0 34.0 34.0 34.0 6 36.91428352255293 38.0 37.0 38.0 35.0 38.0 7 36.94008898435103 38.0 37.0 38.0 35.0 38.0 8 36.7301856397668 38.0 37.0 38.0 34.0 38.0 9 36.77131788892298 38.0 37.0 38.0 34.0 38.0 10-11 36.65820420374348 38.0 37.0 38.0 34.0 38.0 12-13 36.62697146363915 38.0 37.0 38.0 34.0 38.0 14-15 36.67471617060448 38.0 37.0 38.0 34.0 38.0 16-17 36.62386468241792 38.0 37.0 38.0 34.0 38.0 18-19 36.623718932187785 38.0 37.0 38.0 34.0 38.0 20-21 36.671195151887076 38.0 37.0 38.0 34.0 38.0 22-23 36.55555768640687 38.0 37.0 38.0 34.0 38.0 24-25 36.51199370972691 38.0 37.0 38.0 34.0 38.0 26-27 36.36610923596196 38.0 37.0 38.0 34.0 38.0 28-29 36.31678812519178 38.0 37.0 38.0 34.0 38.0 30-31 36.165039122430194 38.0 37.0 38.0 34.0 38.0 32-33 36.13772629640994 38.0 37.0 38.0 33.5 38.0 34-35 36.078793341515805 38.0 37.0 38.0 33.5 38.0 36-37 36.213800245474076 38.0 37.0 38.0 34.0 38.0 38-39 35.76408791040197 38.0 37.0 38.0 31.0 38.0 40-41 36.11327861307149 38.0 37.0 38.0 34.0 38.0 42-43 36.28252915004603 38.0 37.0 38.0 34.0 38.0 44-45 36.28074179196072 38.0 37.0 38.0 34.0 38.0 46-47 36.323300859159254 38.0 37.0 38.0 34.0 38.0 48-49 36.32157870512427 38.0 37.0 38.0 34.0 38.0 50-51 36.26041730592206 38.0 37.0 38.0 34.0 38.0 52-53 36.26027922675667 38.0 37.0 38.0 34.0 38.0 54-55 36.251123810984964 38.0 37.0 38.0 34.0 38.0 56-57 36.26726373120589 38.0 37.0 38.0 34.0 38.0 58-59 36.214337220006136 38.0 37.0 38.0 34.0 38.0 60-61 36.238447376495856 38.0 37.0 38.0 34.0 38.0 62-63 36.21607855170298 38.0 37.0 38.0 34.0 38.0 64-65 36.22220006136851 38.0 37.0 38.0 34.0 38.0 66-67 36.16747084995397 38.0 37.0 38.0 34.0 38.0 68-69 35.991684565817735 38.0 37.0 38.0 32.0 38.0 70-71 35.28172368824793 38.0 36.5 38.0 28.0 38.0 72-73 34.19220619822032 38.0 36.0 38.0 22.5 38.0 74-75 34.07038969008899 38.0 36.0 38.0 21.5 38.0 76 33.38634550475606 37.0 34.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 3.0 21 5.0 22 19.0 23 38.0 24 60.0 25 110.0 26 256.0 27 423.0 28 726.0 29 1220.0 30 2051.0 31 3057.0 32 4677.0 33 7077.0 34 10919.0 35 17596.0 36 23442.0 37 58681.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.75943540963486 16.53344584228291 10.825406566431422 31.881712181650812 2 21.800398895366676 18.533292420988033 35.505523166615525 24.160785517029765 3 19.289659404725377 20.393525621356247 34.34795949677815 25.96885547714023 4 14.811291807302855 23.079165388155875 32.79917152500767 29.310371279533598 5 14.429272783062288 31.19285056765879 38.529456888616146 15.848419760662779 6 28.150506290273093 39.349493709726914 17.20696532678736 15.293034673212642 7 27.46087756980669 27.529917152500765 18.84166922368825 26.167536054004298 8 23.80638232586683 38.1750536974532 17.674900276158333 20.343663700521635 9 22.651887081926972 17.42252224608776 18.291653881558762 41.63393679042651 10-11 24.218318502608163 26.32747775391224 26.825713409021173 22.628490334458423 12-13 24.24094814360233 19.687020558453515 27.44860386621663 28.62342743172752 14-15 22.59665541577171 20.15111997545259 21.257287511506597 35.9949370972691 16-17 27.42060447990181 27.33162012887389 21.093510279226756 24.154265111997546 18-19 27.189321877876647 23.68249463025468 21.96724455354403 27.16093893832464 20-21 22.112611230438787 23.069193003988953 21.981052470082847 32.83714329548941 22-23 22.848266339367903 27.625805461798098 21.841439091745933 27.684489107088062 24-25 27.611613992022093 27.463562442467016 21.632402577477755 23.29242098803314 26-27 26.848343050015345 28.481129180730285 22.280223995090516 22.390303774163854 28-29 22.080392758514883 28.51373120589138 22.85632095734888 26.549555078244865 30-31 22.001380791653883 28.489567351948452 22.429809757594356 27.079242098803313 32-33 21.888616139920224 33.27017490027615 22.73243326173673 22.10877569806689 34-35 27.34657870512427 24.041500460263883 27.31742865909788 21.294492175513962 36-37 27.293264805154955 26.483583921448293 24.227907333537896 21.995243939858852 38-39 22.142144829702364 23.335762503835532 27.909634857318196 26.61245780914391 40-41 21.522706351641606 21.502761583307763 29.224838907640383 27.74969315741025 42-43 26.072414851181342 21.207809143909177 29.13547100337527 23.584305001534215 44-45 21.24463025467935 25.54924823565511 30.321034059527463 22.885087450138077 46-47 25.550782448603865 20.717628106781223 26.07548327707886 27.656106167536056 48-49 24.731896287204663 20.53122123350721 25.714176127646514 29.02270635164161 50-51 20.312979441546485 21.240794722307456 30.518180423442775 27.928045412703284 52-53 18.80638232586683 21.271095428045413 35.35670451058607 24.56581773550169 54-55 18.570497084995395 21.366216630868365 31.315587603559376 28.747698680576868 56-57 22.88355323718932 21.59634857318196 26.427585148818654 29.092513040810065 58-59 18.849723841669224 21.598266339367907 34.141991408407485 25.410018410555384 60-61 22.83982816814974 26.75897514575023 25.674670144216016 24.726526541884013 62-63 18.41170604479902 33.24831236575637 23.028536360846886 25.31144522859773 64-65 18.78988953666769 34.10785517029763 21.785440319116294 25.316814973918376 66-67 18.46041730592206 33.959803620742555 21.01181343970543 26.567965633629946 68-69 18.300859159251303 34.115909788278614 21.09120895980362 26.492022092666463 70-71 18.921064743786438 33.19538201902424 21.17789199140841 26.705661245780917 72-73 19.398588524087142 31.08046946916232 20.97959496778153 28.54134703896901 74-75 19.66055538508745 30.755216324025774 21.16331696839521 28.42091132249156 76 19.46916231972998 31.00184105553851 21.07011353175821 28.458883092973302 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.0 14 1.5 15 5.5 16 9.0 17 10.0 18 11.5 19 23.5 20 36.5 21 39.0 22 55.0 23 95.5 24 171.5 25 223.0 26 290.5 27 374.5 28 457.0 29 523.0 30 711.0 31 963.0 32 1281.5 33 1536.0 34 1756.5 35 2245.5 36 2789.5 37 3065.0 38 3643.0 39 6464.5 40 9487.5 41 9791.5 42 9316.0 43 8791.5 44 7945.5 45 7370.5 46 7117.0 47 6976.0 48 6463.0 49 5957.0 50 5823.0 51 5474.0 52 4513.5 53 3610.0 54 3318.0 55 3046.5 56 2546.0 57 2153.0 58 1989.0 59 1868.0 60 1710.0 61 1645.5 62 1618.0 63 1619.0 64 1609.0 65 1611.5 66 1625.0 67 1625.0 68 1653.5 69 1604.5 70 1526.5 71 1526.0 72 1444.5 73 1303.0 74 1208.5 75 1174.0 76 1092.0 77 901.5 78 703.0 79 613.0 80 539.0 81 395.5 82 304.0 83 282.0 84 216.0 85 122.5 86 71.5 87 48.0 88 38.5 89 22.5 90 10.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 130360.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.260049094814356 #Duplication Level Percentage of deduplicated Percentage of total 1 60.00237284113828 27.15710340595275 2 21.108116811579464 19.10708806382326 3 8.64900594905171 11.743633016262658 4 3.825358892222166 6.925437250690396 5 1.8423416552261824 4.1692236882479285 6 1.1948950017796307 3.244860386621663 7 0.8237148522906391 2.6096962258361462 8 0.571176759715937 2.0681190549248236 9 0.43389095100083047 1.7674133169683952 >10 1.5186183285029067 10.154955507824486 >50 0.005084659582040982 0.17106474378643757 >100 0.018643751800816937 1.7405645903651425 >500 0.003389773054693988 0.9642528382939553 >1k 0.001694886527346994 0.891377723227984 >5k 0.001694886527346994 7.28521018717398 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGT 9497 7.28521018717398 TruSeq Adapter, Index 5 (95% over 23bp) TCTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCG 1162 0.891377723227984 TruSeq Adapter, Index 5 (95% over 22bp) ATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGTCTT 741 0.568425897514575 TruSeq Adapter, Index 5 (96% over 26bp) CTCTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCC 516 0.3958269407793802 RNA PCR Primer, Index 5 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCC 429 0.3290886775084382 RNA PCR Primer, Index 5 (95% over 21bp) CTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGTC 426 0.32678735808530224 TruSeq Adapter, Index 5 (95% over 24bp) CTTTACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGTC 264 0.20251610923596197 RNA PCR Primer, Index 5 (95% over 24bp) CTTATACACATCTCCGAGCCCACGAGACACAAAGTGACCTCGTATGCCGT 230 0.17643448910708806 No Hit TTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCGTC 153 0.1173672905799325 TruSeq Adapter, Index 5 (95% over 24bp) TCTTAATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCC 153 0.1173672905799325 No Hit CTTTATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCG 142 0.10892911936176743 TruSeq Adapter, Index 5 (95% over 22bp) CTTAATACACATCTCCGAGCCCACGAGACACAAAGTGATCTCGTATGCCG 132 0.10125805461798099 TruSeq Adapter, Index 5 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0023013194231359313 0.0 2 0.0 0.0 0.0 0.003068425897514575 0.0 3 0.0 0.0 0.0 0.003068425897514575 0.0 4 0.0 0.0 0.0 0.013807916538815588 0.0 5 0.0 0.0 0.0 0.014575023013194232 0.0 6 0.0 0.0 0.0 0.014575023013194232 0.0 7 0.0 0.0 0.0 0.015342129487572876 0.0 8 0.0 0.0 0.0 0.015342129487572876 0.0 9 0.0 0.0 0.0 0.017643448910708806 0.0 10 0.0 0.0 0.0 0.01841055538508745 0.0 11 0.0 0.0 0.0 0.01841055538508745 0.0 12 0.0 0.0 0.0 0.019177661859466094 0.0 13 0.0 0.0 0.0 0.019177661859466094 0.0 14 0.0 0.0 0.0 0.020711874808223382 0.0 15 0.0 0.0 0.0 0.020711874808223382 0.0 16 0.0 0.0 0.0 0.021478981282602026 0.0 17 0.0 0.0 0.0 0.0245474071801166 0.0 18 0.0 0.0 0.0 0.025314513654495243 0.0 19 0.0 0.0 0.0 0.027615833077631175 0.0 20 0.0 0.0 0.0 0.03068425897514575 0.0 21 0.0 0.0 0.0 0.033752684872660324 0.0 22 0.0 0.0 0.0 0.03451979134703897 0.0 23 0.0 0.0 0.0 0.039889536667689476 0.0 24 0.0 0.0 0.0 0.041423749616446764 0.0 25 0.0 0.0 0.0 0.04986192083461184 0.0 26 0.0 0.0 0.0 0.054464559680883706 0.0 27 0.0 0.0 0.0 0.12964099416999078 0.0 28 0.0 0.0 0.0 0.1825713409021172 0.0 29 0.0 0.0 0.0 0.23396747468548634 0.0 30 0.0 0.0 0.0 0.2807609696225836 0.0 31 0.0 0.0 0.0 0.3329242098803314 0.0 32 0.0 0.0 0.0 0.3927585148818656 0.0 33 0.0 0.0 0.0 0.46486652347345814 0.0 34 0.0 0.0 0.0 0.5853022399509051 0.0 35 0.0 0.0 0.0 0.7747775391224302 0.0 36 0.0 0.0 0.0 1.0961951518870818 0.0 37 0.0 0.0 0.0 1.5618287818349186 0.0 38 0.0 0.0 0.0 2.103405952746241 0.0 39 0.0 0.0 0.0 2.827554464559681 0.0 40 0.0 0.0 0.0 3.6123043878490333 0.0 41 0.0 0.0 0.0 4.687787664927892 0.0 42 0.0 0.0 0.0 5.930500153421295 0.0 43 0.0 0.0 0.0 7.241485118134397 0.0 44 0.0 0.0 0.0 8.335378950598344 0.0 45 0.0 0.0 0.0 9.35486345504756 0.0 46 0.0 0.0 0.0 10.40119668610003 0.0 47 0.0 0.0 0.0 11.438324639459957 0.0 48 0.0 0.0 0.0 12.342743172752378 0.0 49 0.0 0.0 0.0 13.260969622583614 0.0 50 0.0 0.003068425897514575 0.0 14.12856704510586 0.0 51 0.0 0.003068425897514575 0.0 15.141914697760049 0.0 52 0.0 0.003068425897514575 0.0 16.26035593740411 0.0 53 0.0 0.003068425897514575 0.0 17.420988033139 0.0 54 0.0 0.003068425897514575 0.0 18.397514575023013 0.0 55 0.0 0.003068425897514575 0.0 19.347192390303775 0.0 56 0.0 0.003068425897514575 0.0 20.185639766799632 0.0 57 0.0 0.003068425897514575 0.0 20.93817121816508 0.0 58 0.0 0.003068425897514575 0.0 21.6738263270942 0.0 59 0.0 0.003068425897514575 0.0 22.32433261736729 0.0 60 0.0 0.003068425897514575 0.0 23.012427124884933 0.0 61 0.0 0.003068425897514575 0.0 23.725069039582696 0.0 62 0.0 0.003068425897514575 0.0 24.481436023320036 0.0 63 0.0 0.003068425897514575 0.0 25.25467934949371 0.0 64 0.0 0.003068425897514575 0.0 26.05860693464253 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATC 15 0.0022204698 70.0 15 AATCCGC 15 0.0022204698 70.0 10 GGGTCTA 20 7.902318E-5 70.0 1 GAATCCG 15 0.0022204698 70.0 9 CACAGAC 15 0.0022204698 70.0 51 TCTTTAT 70 0.0 60.0 1 TGGAATT 20 0.0069382875 52.5 23 AGAGCTT 20 0.0069382875 52.5 34 CTAGGGA 30 5.860135E-4 46.666664 4 ATCTCGT 1460 0.0 45.787674 37 TCTCGTA 1460 0.0 45.787674 38 TCGTATG 1545 0.0 45.53398 40 TATGCCG 1560 0.0 45.320515 43 CGTCTTC 1545 0.0 45.307446 48 CCGTCTT 1545 0.0 45.307446 47 CTCGTAT 1525 0.0 45.213116 39 GCCGTCT 1560 0.0 45.096153 46 GATCTCG 1485 0.0 45.016838 36 CGTATGC 1565 0.0 44.95208 41 CTTGAAA 1520 0.0 44.901314 57 >>END_MODULE