##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779754_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 124069 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.484883411649967 32.0 23.0 34.0 12.0 34.0 2 26.681765791615955 32.0 21.0 34.0 12.0 34.0 3 25.827660414769202 31.0 21.0 34.0 11.0 34.0 4 27.356205014951357 32.0 23.0 34.0 12.0 34.0 5 27.125341543818358 32.0 23.0 34.0 11.0 34.0 6 29.06860698482296 34.0 21.0 38.0 11.0 38.0 7 30.06036157299567 35.0 25.0 38.0 12.0 38.0 8 29.319217532179675 34.0 21.0 38.0 11.0 38.0 9 30.706768008124513 36.0 26.0 38.0 12.0 38.0 10-11 30.20727579008455 36.0 24.5 38.0 11.0 38.0 12-13 29.668527190514954 35.5 23.5 38.0 11.0 38.0 14-15 29.284007286268125 34.0 22.0 38.0 11.0 38.0 16-17 29.094028322949328 34.5 23.5 38.0 11.0 38.0 18-19 29.636073475243613 34.0 23.0 38.0 11.0 38.0 20-21 28.561828498658002 32.5 22.0 37.5 11.0 38.0 22-23 28.64254165021077 33.5 23.0 37.5 11.0 38.0 24-25 29.453183309287574 35.0 22.5 38.0 11.0 38.0 26-27 28.22143726474784 33.0 21.0 38.0 11.0 38.0 28-29 29.898649138785675 36.0 23.0 38.0 11.0 38.0 30-31 30.356454875915823 37.0 24.0 38.0 11.0 38.0 32-33 30.467880776019797 37.0 25.0 38.0 11.0 38.0 34-35 30.535536677171574 37.0 25.0 38.0 11.0 38.0 36-37 28.867984750421137 34.0 22.0 38.0 11.0 38.0 38-39 27.60665033167028 31.0 21.0 37.0 11.0 38.0 40-41 28.274444059354067 34.0 21.0 37.0 11.0 38.0 42-43 29.136226615834737 35.0 22.5 37.5 11.0 38.0 44-45 30.566112405193884 37.0 26.0 38.0 11.0 38.0 46-47 29.412008640353353 35.5 23.5 38.0 11.0 38.0 48-49 28.75426174145032 34.5 22.0 38.0 11.0 38.0 50-51 27.035705937824922 31.0 16.0 37.0 11.0 38.0 52-53 29.67672021214002 35.0 23.0 37.5 11.0 38.0 54-55 28.930171920463614 35.0 22.0 38.0 11.0 38.0 56-57 29.349233088039718 35.5 22.5 38.0 11.0 38.0 58-59 30.194754531752494 36.5 23.5 38.0 11.0 38.0 60-61 30.683498698304973 37.0 25.0 38.0 11.0 38.0 62-63 30.611760391395112 37.0 24.5 38.0 11.0 38.0 64-65 30.387155534420366 36.5 24.0 38.0 11.0 38.0 66-67 28.711543576558206 34.0 21.0 38.0 11.0 38.0 68-69 28.69594741635703 34.0 21.0 38.0 11.0 38.0 70-71 28.38651476194698 34.0 21.0 38.0 11.0 38.0 72-73 27.366159153374333 31.5 20.5 37.0 11.0 38.0 74-75 28.85329937373558 35.0 22.0 37.5 11.0 38.0 76 29.083300421539626 34.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 2.0 4 2.0 5 1.0 6 0.0 7 0.0 8 2.0 9 0.0 10 0.0 11 15.0 12 83.0 13 405.0 14 1039.0 15 1900.0 16 3049.0 17 4576.0 18 5941.0 19 6203.0 20 5284.0 21 4080.0 22 3019.0 23 2470.0 24 2168.0 25 1978.0 26 2208.0 27 2424.0 28 2742.0 29 3207.0 30 3925.0 31 4835.0 32 6099.0 33 7949.0 34 10632.0 35 13774.0 36 15567.0 37 8490.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.897766565378944 16.909139269277578 14.132458551290009 33.06063561405347 2 20.20246798152641 15.002135908244608 41.495458172468545 23.29993793776044 3 18.908832988095334 16.221618615447856 39.522362556319464 25.347185840137342 4 15.018255970468047 19.800272429051578 29.383649420886766 35.79782217959362 5 16.120868226551355 25.797741579282494 39.26605356696677 18.81533662719938 6 26.676284970459985 33.36933480563235 15.790406950970832 24.163973272936833 7 25.82756369439586 23.702133490235273 19.15949995566983 31.310802859699038 8 22.02993640327898 32.959867164263315 16.671368578867188 28.338827853590516 9 21.777469693061647 15.41301263863812 18.219628578798037 44.58988908950219 10-11 24.722415898566435 22.455798132377893 26.122527939771807 26.69925802928386 12-13 23.416826196473554 17.421057934508816 29.189722921914356 29.972392947103277 14-15 25.03103237038948 21.16246453443384 21.978575573897345 31.827927521279342 16-17 27.59713042076415 19.38779622763179 23.42213445107206 29.592938900532 18-19 22.632544080604532 19.26125944584383 27.015012594458437 31.091183879093197 20-21 27.019119164302296 19.368229301005933 24.572398117100853 29.04025341759092 22-23 28.146121077046466 18.19258996546068 24.26860871422641 29.392680243266444 24-25 23.302301213073793 23.031878450812073 21.05227098698263 32.6135493491315 26-27 25.969257802424554 21.970515217952023 24.193158369873615 27.867068609749808 28-29 24.365856607423527 22.34554467416274 23.68153790351832 29.60706081489542 30-31 23.82900347409742 21.936386132628304 24.48271414868492 29.751896244589354 32-33 24.100867294299714 21.464727882383286 24.712245292752126 29.722159530564866 34-35 24.27627787383074 21.531715613375408 24.438694700697628 29.75331181209622 36-37 26.806570961059478 17.936740796866058 29.12921869080533 26.127469551269133 38-39 25.991246241768163 16.67445853249611 33.58630028776167 23.747994937974063 40-41 24.683322384462546 21.923803919830085 24.1053832171947 29.287490478512673 42-43 20.925808752705247 22.591071579702493 26.125523417254737 30.357596250337526 44-45 20.742284162078946 19.56022343486777 29.28391220589539 30.4135801971579 46-47 25.229622166246852 18.85662468513854 27.84080604534005 28.072947103274558 48-49 25.026800899542973 19.30793226022263 28.933283896085054 26.731982944149348 50-51 29.53793450881612 17.797481108312343 28.293400503778336 24.3711838790932 52-53 19.76124648358469 21.383835371309274 28.78946647213871 30.06545167296733 54-55 24.173786877317426 19.921408995647266 26.62219893599871 29.28260519103659 56-57 24.31930294041785 20.35199574413206 25.725432035078672 29.603269280371418 58-59 20.700536828360015 22.12240653866615 27.239202979155586 29.93785365381825 60-61 20.269382523990117 20.50273453085768 27.304199933097696 31.923683012054504 62-63 20.253664513164843 22.033023943769827 26.90802545511702 30.805286087948314 64-65 20.689168765743073 23.06498740554156 26.18478589420655 30.061057934508817 66-67 19.01957939367559 26.933555808123554 21.15162946662475 32.8952353315761 68-69 19.262242216095068 27.136442058078973 21.51800254760638 32.08331317821958 70-71 19.071512630781385 28.10892940626461 20.737615063436024 32.08194289951798 72-73 18.032919024358787 29.179764956231562 20.490964195321695 32.29635182408796 74-75 19.62567103545002 25.826199803324144 25.04151150231336 29.506617658912482 76 20.843610452838096 24.15324595766633 26.50045944769551 28.502684141800067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 1.5 6 1.5 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 1.0 14 1.5 15 0.5 16 1.0 17 2.0 18 4.5 19 10.0 20 18.0 21 23.0 22 36.0 23 52.0 24 84.5 25 114.0 26 151.0 27 229.5 28 335.0 29 399.0 30 490.0 31 706.0 32 956.0 33 1081.0 34 1313.0 35 1741.0 36 2215.5 37 2494.0 38 2811.0 39 3498.5 40 4204.0 41 4808.5 42 5078.0 43 5420.0 44 5921.0 45 6181.0 46 6282.0 47 6258.5 48 6020.0 49 5614.0 50 5423.0 51 5196.5 52 4735.0 53 4317.0 54 4134.0 55 3974.0 56 3675.5 57 3515.0 58 3493.0 59 3359.5 60 3180.0 61 3154.0 62 3174.0 63 3033.0 64 2852.5 65 2806.5 66 2729.0 67 2658.0 68 2568.0 69 2463.0 70 2373.5 71 2299.0 72 2169.5 73 1976.0 74 1775.0 75 1638.0 76 1455.0 77 1164.5 78 901.5 79 746.0 80 628.0 81 411.5 82 257.5 83 202.0 84 155.5 85 82.0 86 38.0 87 21.0 88 16.5 89 9.5 90 5.0 91 2.5 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.004836018667032055 9 0.004030015555860045 10-11 0.0060450233337900686 12-13 0.00523902022261806 14-15 0.004030015555860045 16-17 0.007254028000548082 18-19 0.00523902022261806 20-21 0.004030015555860045 22-23 0.0060450233337900686 24-25 0.003224012444688036 26-27 0.004030015555860045 28-29 0.003224012444688036 30-31 0.006448024889376072 32-33 0.004030015555860045 34-35 0.00443301711144605 36-37 0.006448024889376072 38-39 0.006448024889376072 40-41 0.0060450233337900686 42-43 0.003627014000274041 44-45 0.004836018667032055 46-47 0.00523902022261806 48-49 0.004836018667032055 50-51 0.00523902022261806 52-53 0.006448024889376072 54-55 0.007254028000548082 56-57 0.004030015555860045 58-59 0.005642021778204063 60-61 0.0060450233337900686 62-63 0.0060450233337900686 64-65 0.00523902022261806 66-67 0.00806003111172009 68-69 0.024986096446332283 70-71 0.005642021778204063 72-73 0.005642021778204063 74-75 0.005642021778204063 76 0.005642021778204063 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 124069.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 95.42280765478876 #Duplication Level Percentage of deduplicated Percentage of total 1 96.62110534551779 92.19857150778425 2 2.5317788725357753 4.831788967568784 3 0.5341945926068664 1.5292304358165978 4 0.17801230241122867 0.6794573477269105 5 0.06995697880764401 0.3337745666435974 6 0.035973709731750236 0.2059627430617203 7 0.0139895017393613 0.09344422735629841 8 0.005995480840811008 0.0457684492056544 9 0.004996231225210582 0.04290789700819071 >10 0.003996984583572703 0.03909385782800806 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004030015555860046 0.0 2 0.0 0.0 0.0 0.004030015555860046 0.0 3 0.0 0.0 0.0 0.004030015555860046 0.0 4 0.0 0.0 0.0 0.0088660342228921 0.0 5 0.0 0.0 0.0 0.010478040445236118 0.0 6 0.0 0.0 0.0 0.010478040445236118 0.0 7 0.0 0.0 0.0 0.010478040445236118 0.0 8 0.0 0.0 0.0 0.011284043556408128 0.0 9 0.0 0.0 0.0 0.011284043556408128 0.0 10 0.0 0.0 0.0 0.013702052889924154 0.0 11 0.0 0.0 0.0 0.016926065334612193 0.0 12 0.0 0.0 0.0 0.016926065334612193 0.0 13 0.0 0.0 0.0 0.0177320684457842 0.0 14 0.0 0.0 0.0 0.01934407466812822 0.0 15 0.0 0.0 0.0 0.022568087112816257 0.0 16 0.0 0.0 0.0 0.02579209955750429 0.0 17 0.0 0.0 0.0 0.02579209955750429 0.0 18 0.0 0.0 0.0 0.0265981026686763 0.0 19 0.0 0.0 0.0 0.02901611200219233 0.0 20 0.0 0.0 0.0 0.03224012444688037 0.0 21 0.0 0.0 0.0 0.0354641368915684 0.0 22 0.0 0.0 0.0 0.05239020222618059 0.0 23 0.0 0.0 0.0 0.056420217782040635 0.0 24 0.0 0.0 0.0 0.06851026444962077 0.0 25 0.0 0.0 0.0 0.07012227067196479 0.0 26 0.0 0.0 0.0 0.07254028000548082 0.0 27 0.0 0.0 0.0 0.11203443245290927 0.0 28 0.0 0.0 0.0 0.1587826129008858 0.0 29 0.0 0.0 0.0 0.19021673423659416 0.0 30 0.0 0.0 0.0 0.2458309489074628 0.0 31 0.0 0.0 0.0 0.2788770764655152 0.0 32 0.0 0.0 0.0 0.31917723202411563 0.0 33 0.0 0.0 0.0 0.37801545913967227 0.0 34 0.0 0.0 0.0 0.46989981381328133 8.060031111720091E-4 35 0.0 0.0 0.0 0.6472204982711234 8.060031111720091E-4 36 0.0 0.0 0.0 0.8076151173943531 8.060031111720091E-4 37 0.0 0.0 0.0 1.2791269374299785 8.060031111720091E-4 38 0.0 0.0 0.0 1.669232443237231 8.060031111720091E-4 39 0.0 0.0 0.0 2.109310141937148 8.060031111720091E-4 40 0.0 0.0 0.0 2.5872699868621494 8.060031111720091E-4 41 0.0 0.0 0.0 3.0652298317871507 8.060031111720091E-4 42 0.0 0.0 0.0 3.5512497078238723 8.060031111720091E-4 43 0.0 0.0 0.0 4.008253471858401 8.060031111720091E-4 44 0.0 0.0 0.0 4.53699151278724 8.060031111720091E-4 45 0.0 0.0 0.0 4.923873006149804 8.060031111720091E-4 46 0.0 0.0 0.0 5.400220844852461 8.060031111720091E-4 47 0.0 0.0 0.0 5.908002804890827 8.060031111720091E-4 48 0.0 0.0 0.0 6.207835962246814 8.060031111720091E-4 49 0.0 0.0 0.0 6.521371172492726 8.060031111720091E-4 50 0.0 0.0 0.0 6.934850768523966 8.060031111720091E-4 51 0.0 0.0 0.0 7.444244734784676 8.060031111720091E-4 52 0.0 0.0 0.0 7.8472462903706806 8.060031111720091E-4 53 0.0 0.0 0.0 8.30828006996107 8.060031111720091E-4 54 0.0 0.0 0.0 8.827346073555844 8.060031111720091E-4 55 0.0 0.0 0.0 9.148941314913476 8.060031111720091E-4 56 0.0 0.0 0.0 9.510836711829707 8.060031111720091E-4 57 0.0 0.0 0.0 9.827595934520307 8.060031111720091E-4 58 0.0 0.0 0.0 10.08148691453949 8.060031111720091E-4 59 0.0 0.0 0.0 10.420008221231734 8.060031111720091E-4 60 0.0 0.0 0.0 10.633599045692316 8.060031111720091E-4 61 0.0 0.0 0.0 10.8471898701529 8.060031111720091E-4 62 0.0 0.0 0.0 10.98421039905214 8.060031111720091E-4 63 0.0 0.0 0.0 11.198607226623896 8.060031111720091E-4 64 0.0 0.0 0.0 11.381569932859941 8.060031111720091E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACGTAT 15 0.0022193515 70.00686 54 AAACTCG 20 7.896968E-5 70.00685 27 TCGATAT 15 0.0022229047 69.97864 39 CGTGTAT 20 7.912764E-5 69.97864 35 TTACGGT 15 0.0022229047 69.97864 43 GACTAAA 30 1.0189251E-7 69.97864 23 ATGTATA 40 1.05592335E-8 61.255997 28 GAAACTC 35 2.9522016E-7 60.00588 26 GATTTCG 35 2.9604598E-7 59.98169 41 TACGCTT 30 8.331432E-6 58.339046 14 AGATTTC 30 8.351382E-6 58.315533 40 TCTAGAC 25 2.3720646E-4 56.050686 64 ACGTATC 25 2.3815462E-4 56.00548 55 GTAAAGT 25 2.3862983E-4 55.98291 35 ATTTCGG 25 2.3862983E-4 55.98291 42 CGGTGGT 175 0.0 53.98352 46 TTACGCT 85 0.0 53.534653 13 TCTCGGT 205 0.0 52.910675 43 ACAAAAG 20 0.0069348067 52.505142 69 CGTATAG 20 0.006945878 52.48398 35 >>END_MODULE