##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779753_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 234271 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.36637910795617 34.0 27.0 34.0 12.0 34.0 2 27.83891732224646 34.0 23.0 34.0 12.0 34.0 3 26.78738298807791 32.0 21.0 34.0 11.0 34.0 4 29.095329767662236 34.0 23.0 34.0 12.0 34.0 5 28.66665101527718 34.0 23.0 34.0 11.0 34.0 6 31.007901105984097 36.0 27.0 38.0 11.0 38.0 7 31.961348182233397 37.0 28.0 38.0 12.0 38.0 8 31.197288610199298 37.0 27.0 38.0 11.0 38.0 9 32.65828463616922 37.0 31.0 38.0 12.0 38.0 10-11 32.340780549022284 37.0 31.0 38.0 11.0 38.0 12-13 31.366773949827337 36.0 28.5 38.0 11.0 38.0 14-15 31.380766292029314 36.5 27.0 38.0 11.0 38.0 16-17 31.051506588523544 36.0 27.0 38.0 11.0 38.0 18-19 31.617857097122563 37.0 29.0 38.0 11.5 38.0 20-21 30.5117321392746 35.5 26.5 38.0 11.0 38.0 22-23 30.511211374860736 35.5 26.0 38.0 11.0 38.0 24-25 31.65809041665422 36.5 29.0 38.0 11.0 38.0 26-27 30.245124236461194 35.5 24.5 38.0 11.0 38.0 28-29 32.34453688249933 37.0 31.0 38.0 11.0 38.0 30-31 32.8220799842917 37.0 33.0 38.0 11.0 38.0 32-33 32.91113496762297 38.0 34.0 38.0 11.0 38.0 34-35 32.95682777637864 38.0 34.0 38.0 11.0 38.0 36-37 30.860356168710595 36.5 27.0 38.0 11.0 38.0 38-39 29.118655317986434 34.0 23.0 37.5 11.0 38.0 40-41 30.293770889269265 35.0 25.0 37.5 11.0 38.0 42-43 31.362420017842584 36.5 28.0 38.0 11.0 38.0 44-45 33.00829594785526 37.5 33.5 38.0 11.0 38.0 46-47 31.550838558763143 37.0 28.5 38.0 11.0 38.0 48-49 30.9674372841709 36.0 27.0 38.0 11.0 38.0 50-51 28.77661767781757 34.0 21.5 37.5 11.0 38.0 52-53 32.146447917155776 36.5 29.5 38.0 11.0 38.0 54-55 31.18588515010394 36.5 27.0 38.0 11.0 38.0 56-57 31.615270349296324 36.5 28.5 38.0 11.0 38.0 58-59 32.73145203631691 37.0 32.5 38.0 11.0 38.0 60-61 33.223905220876674 38.0 34.0 38.0 11.0 38.0 62-63 33.101009087765874 38.0 34.0 38.0 11.0 38.0 64-65 32.787852529762546 37.5 32.5 38.0 11.0 38.0 66-67 30.702278557738687 36.5 25.0 38.0 11.0 38.0 68-69 30.8140956413726 36.5 26.0 38.0 11.0 38.0 70-71 30.419475735366305 35.5 25.0 38.0 11.0 38.0 72-73 29.18569946771047 34.0 22.5 37.5 11.0 38.0 74-75 31.28400655650934 36.5 28.0 38.0 11.0 38.0 76 31.696680340289664 37.0 28.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 5.0 4 2.0 5 0.0 6 1.0 7 5.0 8 1.0 9 1.0 10 5.0 11 13.0 12 66.0 13 365.0 14 990.0 15 1709.0 16 2835.0 17 4422.0 18 5927.0 19 6203.0 20 5587.0 21 4727.0 22 3890.0 23 3566.0 24 3538.0 25 3882.0 26 4254.0 27 5045.0 28 5968.0 29 6993.0 30 8602.0 31 10997.0 32 13868.0 33 18495.0 34 24496.0 35 31964.0 36 35893.0 37 19955.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.80616038690235 18.556714232662173 10.819094126033525 29.818031254401955 2 21.330425020595804 16.44420350790324 37.52619829172198 24.699173179778974 3 21.425278524779102 16.870704742391258 34.450420455030525 27.25359627779912 4 15.41702416473511 17.80788587381065 31.77698950342985 34.99810045802439 5 15.9729543989653 28.58228291167067 37.47540241856653 17.969360270797495 6 30.01609247410051 31.443926051453232 15.577258815645129 22.962722658801134 7 29.070606263686074 24.438364116770746 19.92009254239748 26.5709370771457 8 24.99957312387945 30.491761290873388 17.223597711943995 27.285067873303166 9 23.941978502335033 15.005250621110058 18.827532037326367 42.22523883922854 10-11 26.397314015188705 22.20611902515656 25.71621281264274 25.68035414701199 12-13 25.649826044267996 18.643572175620584 27.575291882777314 28.1313098973341 14-15 24.68005361609849 21.12371829350545 22.834012072159755 31.362216018236307 16-17 25.93918359331643 21.692579595809534 25.224123357495966 27.144113453378072 18-19 23.848828497697976 21.47295309935304 26.395888162458565 28.282330240490417 20-21 25.131052087868934 21.217845281697954 26.63601669953641 27.015085930896703 22-23 25.966275346851653 20.669797225186766 26.637566702241195 26.726360725720383 24-25 24.23060751004762 23.290624286314962 22.939944804799804 29.538823398837614 26-27 24.36128933113066 22.608543462206683 26.074976201757867 26.955191004904787 28-29 24.677331568893205 23.548872501414042 24.732826056796476 27.04096987289628 30-31 24.32978160271844 23.018586821030343 24.97118487782388 27.680446698427335 32-33 24.207756061223748 23.126884961078822 25.298018616425228 27.367340361272202 34-35 24.773270097266007 22.77971180916482 25.169420438027874 27.277597655541303 36-37 25.050587411632115 20.581605819473378 28.98936170212766 25.378445066766847 38-39 24.66851371196339 19.790350397868924 32.0649482599638 23.47618763020389 40-41 24.39492933816294 21.844870533341588 24.935378730797716 28.824821397697754 42-43 22.43331156274412 21.856177511408216 26.302073328466967 29.408437597380697 44-45 22.085046254199593 20.783012947760714 28.671627200116117 28.460313597923577 46-47 23.627193385000567 20.154489435680272 29.359182601902624 26.859134577416537 48-49 23.64729587241145 20.8353788425335 29.362270707312177 26.15505457774287 50-51 24.53128201625572 19.83599139403046 31.238474147940714 24.394252441773105 52-53 20.51744526077175 22.523660922018212 28.65970535375053 28.29918846345951 54-55 22.19663222333452 21.66173246901274 28.02289866146993 28.118736646182807 56-57 21.970908081918402 22.215724149707054 27.594847550238523 28.21852021813602 58-59 20.697670447511427 22.867565133126433 27.852602550255924 28.582161869106216 60-61 20.84166668445397 22.015628635279903 27.47369791611081 29.669006764155313 62-63 20.719272744348466 22.79141346549954 27.10325058004145 29.386063210110546 64-65 21.467493964948677 22.96222303329897 26.153596591770135 29.41668640998222 66-67 20.34024205425943 23.78023010096267 22.724497854810135 33.15502998996777 68-69 20.62346945529155 24.237209610166126 22.859265680143643 32.28005525439868 70-71 20.550907150480256 24.804695837780148 22.37545357524013 32.26894343649946 72-73 19.844569760045765 24.993276500194234 21.314134717591664 33.848019022168344 74-75 21.09043330892978 25.566955738499203 24.686079942626748 28.65653100994427 76 21.526390383006337 25.027321004729945 25.55837303416833 27.887915578095384 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 1.0 2 1.0 3 1.5 4 3.0 5 2.0 6 0.5 7 1.0 8 2.0 9 1.5 10 1.0 11 1.5 12 2.0 13 2.5 14 2.5 15 2.5 16 3.0 17 3.0 18 10.5 19 22.0 20 29.5 21 33.0 22 49.5 23 105.5 24 197.5 25 250.0 26 336.5 27 501.5 28 713.5 29 847.0 30 1015.5 31 1405.5 32 1982.0 33 2337.0 34 2677.5 35 3586.0 36 4660.0 37 5166.0 38 5785.0 39 7131.0 40 8676.0 41 10028.5 42 10563.0 43 11090.0 44 11992.5 45 12653.5 46 12939.0 47 12847.5 48 12487.5 49 11825.0 50 11431.0 51 10830.0 52 9595.0 53 8299.5 54 7638.0 55 7199.0 56 6476.0 57 5890.5 58 5589.0 59 5347.0 60 5037.0 61 4794.5 62 4620.0 63 4518.5 64 4461.0 65 4453.0 66 4343.5 67 4286.0 68 4221.0 69 4075.0 70 3869.0 71 3744.0 72 3665.0 73 3338.0 74 2909.0 75 2728.0 76 2483.0 77 1997.5 78 1526.0 79 1295.0 80 1113.0 81 769.0 82 505.0 83 403.0 84 308.5 85 167.0 86 97.5 87 75.0 88 67.0 89 44.0 90 19.5 91 8.0 92 6.0 93 5.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 4.2685607693653937E-4 4 0.0017074243077461575 5 0.0 6 0.0 7 0.0 8 0.004695416846301932 9 0.005549129000175011 10-11 0.007683409384857708 12-13 0.00682969723098463 14-15 0.005549129000175011 16-17 0.010671401923413483 18-19 0.008750549577199056 20-21 0.005549129000175011 22-23 0.008963977615667324 24-25 0.004908844884770202 26-27 0.004268560769365393 28-29 0.005762557038643281 30-31 0.008110265461794247 32-33 0.006616269192516359 34-35 0.007043125269452899 36-37 0.009817689769540405 38-39 0.009817689769540405 40-41 0.009177405654135596 42-43 0.004268560769365393 44-45 0.009390833692603864 46-47 0.006616269192516359 48-49 0.007683409384857708 50-51 0.00640284115404809 52-53 0.010244545846476943 54-55 0.009177405654135596 56-57 0.005762557038643281 58-59 0.008537121538730786 60-61 0.009177405654135596 62-63 0.008750549577199056 64-65 0.00618941311557982 66-67 0.011098258000350022 68-69 0.03478877027032795 70-71 0.008963977615667324 72-73 0.007683409384857708 74-75 0.006616269192516359 76 0.008110265461794247 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 234271.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 95.3796571839404 #Duplication Level Percentage of deduplicated Percentage of total 1 97.03168717908764 92.54849059120723 2 2.097395799414771 4.000977846544349 3 0.4607193277417996 1.3182975461408497 4 0.18722700375938775 0.7143058973658689 5 0.09461197768780846 0.4512028998678894 6 0.04905736303900364 0.28074446814049653 7 0.027562444538509936 0.18402275578641134 8 0.018375167475424784 0.1402093739602806 9 0.01115316487562573 0.09574065381178325 >10 0.02221057238000586 0.26600796717485714 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0017074243077461573 0.0 2 0.0 0.0 0.0 0.0021342803846826964 0.0 3 0.0 0.0 0.0 0.0021342803846826964 0.0 4 0.0 0.0 0.0 0.0025611364616192358 0.0 5 0.0 0.0 0.0 0.0034148486154923145 0.0 6 0.0 0.0 0.0 0.0034148486154923145 0.0 7 0.0 0.0 0.0 0.004695416846301932 0.0 8 0.0 0.0 0.0 0.004695416846301932 0.0 9 0.0 0.0 0.0 0.00597598507711155 0.0 10 0.0 0.0 0.0 0.007256553307921168 0.0 11 0.0 0.0 0.0 0.007256553307921168 0.0 12 0.0 0.0 0.0 0.007683409384857708 0.0 13 0.0 0.0 0.0 0.008110265461794247 0.0 14 0.0 0.0 0.0 0.008537121538730786 0.0 15 0.0 0.0 0.0 0.008963977615667326 0.0 16 0.0 0.0 0.0 0.009390833692603864 0.0 17 0.0 0.0 0.0 0.010671401923413483 0.0 18 0.0 0.0 0.0 0.011098258000350022 0.0 19 0.0 0.0 0.0 0.013232538385032718 0.0 20 0.0 0.0 0.0 0.015366818769715416 0.0 21 0.0 0.0 0.0 0.01835481130827119 0.0 22 0.0 0.0 0.0 0.026465076770065436 0.0 23 0.0 0.0 0.0 0.029453069308621214 0.0 24 0.0 0.0 0.0 0.034575342231859686 0.0 25 0.0 0.0 0.0 0.04012447123203469 0.0 26 0.0 0.0 0.0 0.04183189553978085 0.0 27 0.0 0.0 0.0 0.08963977615667325 0.0 28 0.0 0.0 0.0 0.13958193715824835 0.0 29 0.0 0.0 0.0 0.18397496915964845 0.0 30 0.0 0.0 0.0 0.2369051226997793 0.0 31 0.0 0.0 0.0 0.26806561631614667 0.0 32 0.0 0.0 0.0 0.32483747454870643 0.0 33 0.0 0.0 0.0 0.38288990101207576 0.0 34 0.0 0.0 0.0 0.44905259293723937 0.0 35 0.0 0.0 0.0 0.6082699096345685 0.0 36 0.0 0.0 0.0 0.7508398393313727 0.0 37 0.0 0.0 0.0 1.1533651198825292 0.0 38 0.0 0.0 0.0 1.5780869164343858 0.0 39 0.0 0.0 0.0 2.1065347396818215 0.0 40 0.0 0.0 0.0 2.7271834755475495 0.0 41 0.0 0.0 0.0 3.5164403618032107 0.0 42 0.0 0.0 0.0 4.320637210751651 0.0 43 0.0 0.0 0.0 5.226852662087924 0.0 44 0.0 0.0 0.0 6.0033038660354885 4.268560769365393E-4 45 0.0 0.0 0.0 6.569741880130277 4.268560769365393E-4 46 0.0 0.0 0.0 7.245455049920818 4.268560769365393E-4 47 0.0 0.0 0.0 8.05562788394637 8.537121538730786E-4 48 0.0 0.0 0.0 8.600723094194331 8.537121538730786E-4 49 0.0 0.0 0.0 9.076667619978572 8.537121538730786E-4 50 0.0 0.0 0.0 9.755795638384607 8.537121538730786E-4 51 0.0 0.0 0.0 10.56084619948692 8.537121538730786E-4 52 0.0 0.0 0.0 11.301014636894879 8.537121538730786E-4 53 0.0 0.0 0.0 12.294735584003142 8.537121538730786E-4 54 0.0 0.0 0.0 13.12753179010633 8.537121538730786E-4 55 0.0 0.0 0.0 13.635917377737748 8.537121538730786E-4 56 0.0 0.0 0.0 14.17717088329328 8.537121538730786E-4 57 0.0 0.0 0.0 14.658664538077696 8.537121538730786E-4 58 0.0 0.0 0.0 15.116254252553667 8.537121538730786E-4 59 0.0 0.0 0.0 15.608419309261496 8.537121538730786E-4 60 0.0 0.0 0.0 15.949050458656854 8.537121538730786E-4 61 0.0 0.0 0.0 16.283705622975102 8.537121538730786E-4 62 0.0 0.0 0.0 16.544514685983327 8.537121538730786E-4 63 0.0 0.0 0.0 16.868071592301224 8.537121538730786E-4 64 0.0 0.0 0.0 17.21852043146612 8.537121538730786E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACTCG 20 0.0069469237 52.496635 24 ATGGAAT 40 7.4618583E-7 52.496635 22 CGTTAGT 20 0.0069469237 52.496635 37 GCCGTAT 115 0.0 51.73582 54 GAGTGAC 30 5.8716215E-4 46.66368 7 TAGATCT 190 0.0 44.207695 39 TTCGTGT 40 4.58529E-5 43.747196 33 GTAGATC 145 0.0 43.445496 38 ACGCTTC 115 0.0 42.60597 15 CTCTCGG 75 7.530616E-10 41.99731 42 ATCTCGT 100 0.0 41.997307 42 GACGCTT 100 0.0 41.997307 14 TGGTCGC 170 0.0 41.173836 49 GTAATGG 35 0.0012541183 39.997437 58 GCCGAAA 80 1.4151738E-9 39.37248 70 CTTCCGA 125 0.0 39.19749 18 CGCCGTA 165 0.0 38.179375 53 AGATCTC 225 0.0 37.33094 40 TCGGTGG 240 0.0 36.456 45 CGACACT 50 1.7005613E-4 35.020184 68 >>END_MODULE