##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779753_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 234271 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.66321482385784 34.0 34.0 34.0 34.0 34.0 2 33.655557025837595 34.0 34.0 34.0 34.0 34.0 3 33.682098936701514 34.0 34.0 34.0 34.0 34.0 4 33.71325516175711 34.0 34.0 34.0 34.0 34.0 5 33.71015618663855 34.0 34.0 34.0 34.0 34.0 6 37.367074883361575 38.0 38.0 38.0 37.0 38.0 7 37.360996452826 38.0 38.0 38.0 37.0 38.0 8 37.24776007273628 38.0 38.0 38.0 36.0 38.0 9 37.24723503976164 38.0 38.0 38.0 36.0 38.0 10-11 37.1735447409197 38.0 38.0 38.0 36.0 38.0 12-13 37.14034600953597 38.0 38.0 38.0 36.0 38.0 14-15 37.16023536844082 38.0 38.0 38.0 36.0 38.0 16-17 37.157462938221116 38.0 38.0 38.0 36.0 38.0 18-19 37.15415266934448 38.0 38.0 38.0 36.0 38.0 20-21 37.15529877791105 38.0 38.0 38.0 36.0 38.0 22-23 37.108338206606874 38.0 38.0 38.0 36.0 38.0 24-25 37.098838524614656 38.0 38.0 38.0 36.0 38.0 26-27 37.019701542231005 38.0 38.0 38.0 35.5 38.0 28-29 36.963164454840765 38.0 38.0 38.0 35.5 38.0 30-31 36.75382569758955 38.0 37.0 38.0 34.0 38.0 32-33 36.798363860657105 38.0 37.0 38.0 34.5 38.0 34-35 36.846545240341314 38.0 38.0 38.0 35.0 38.0 36-37 36.83842857203837 38.0 37.0 38.0 35.0 38.0 38-39 36.39880096127989 38.0 37.0 38.0 34.0 38.0 40-41 36.78735524243291 38.0 37.0 38.0 34.5 38.0 42-43 36.92042549013749 38.0 37.0 38.0 35.0 38.0 44-45 36.90686213829284 38.0 38.0 38.0 35.0 38.0 46-47 36.94269884023204 38.0 38.0 38.0 35.0 38.0 48-49 36.925421840518034 38.0 38.0 38.0 35.0 38.0 50-51 36.867034332034265 38.0 37.5 38.0 35.0 38.0 52-53 36.85574185451891 38.0 38.0 38.0 35.0 38.0 54-55 36.85067507288568 38.0 38.0 38.0 35.0 38.0 56-57 36.88112485113395 38.0 38.0 38.0 35.0 38.0 58-59 36.80750711782508 38.0 37.0 38.0 35.0 38.0 60-61 36.86563210982153 38.0 37.5 38.0 35.0 38.0 62-63 36.875328145609146 38.0 38.0 38.0 35.0 38.0 64-65 36.895162013224 38.0 38.0 38.0 35.0 38.0 66-67 36.84333314836237 38.0 38.0 38.0 35.0 38.0 68-69 36.697348370050065 38.0 37.0 38.0 34.0 38.0 70-71 35.79753575986784 38.0 37.0 38.0 30.5 38.0 72-73 34.267672908725366 38.0 36.5 38.0 22.0 38.0 74-75 34.09575662373918 38.0 36.0 38.0 20.0 38.0 76 33.61850164979874 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 6.0 21 7.0 22 18.0 23 40.0 24 71.0 25 151.0 26 263.0 27 428.0 28 761.0 29 1309.0 30 2025.0 31 3044.0 32 4901.0 33 7912.0 34 13422.0 35 26551.0 36 35981.0 37 137379.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.85274319057843 15.979357240119349 10.51517259925471 35.65272697004751 2 19.683187419697703 15.93112250342552 39.07312471454 25.31256536233678 3 18.770142271130442 17.961250005335703 35.24166456795762 28.026943155576234 4 14.14131497283061 23.89156148221504 31.089635507595904 30.877488037358443 5 14.460603318379142 30.165492101028295 39.815854288409575 15.558050292182985 6 29.202077935382526 40.05489369149404 15.289984675866839 15.453043697256597 7 27.58173226733142 25.047060882482253 17.831912614023928 29.539294236162394 8 24.224936078302477 39.09788236700232 15.73263442765003 20.944547127045173 9 22.265239829086827 15.09491144870684 16.26791194812845 46.37193677407788 10-11 24.952939117517747 26.062764917552748 26.093925411169117 22.890370553760388 12-13 24.19847100153241 18.01674129533745 26.848606955192917 30.936180747937218 14-15 22.505773228440567 18.48222784723675 19.17245412364313 39.839544800679555 16-17 29.434714497312942 26.133409598285745 19.360911081610613 25.0709648227907 18-19 29.32287820515557 21.620900580951123 19.957655877167895 29.098565336725418 20-21 22.858783204067084 20.65428499472833 19.982626957668685 36.504304843535905 22-23 23.35052140469798 26.715214431150248 19.78029717720076 30.15396698695101 24-25 29.239427842114473 26.669327402879574 19.63153783438838 24.459706920617574 26-27 28.962184820144195 27.61673446564022 20.376828544719576 23.04425216949601 28-29 28.9325183227971 21.685782704645476 20.617575372111784 28.76412360044564 30-31 29.616982042164842 26.26744240644382 20.261577403946713 23.853998147444628 32-33 23.542393211280952 26.807628771807007 20.365730286719227 29.28424773019281 34-35 28.211131552774347 21.549829044141187 21.102270447473227 29.136768955611238 36-37 23.752192973095262 25.535384234497656 27.04922931135309 23.663193481053995 38-39 21.75173196853217 21.5651958629109 28.0884104306551 28.594661737901834 40-41 21.953848320961622 19.269990737223132 28.80680920813929 29.969351733675957 42-43 27.760158107490895 19.22196942856777 28.276013676468704 24.74185878747263 44-45 21.562634726449286 25.050689159136212 29.93285553909788 23.45382057531662 46-47 26.93846015938806 19.34063541795613 24.638132760777047 29.082771661878766 48-49 26.256984432558873 18.773770547784405 23.971170140563704 30.998074879093018 50-51 20.50253765937739 19.456953698921335 30.117043936296 29.92346470540528 52-53 18.996589419945277 19.76343636216177 36.07830247875324 25.161671739139713 54-55 18.483508415467558 19.780083749162294 31.06402414297971 30.672383692390436 56-57 24.250974298995608 19.858411839280148 24.959341958671793 30.931271903052448 58-59 19.329110303878842 19.924147675128374 34.62186954424576 26.12487247674701 60-61 24.64304160566182 26.220274809942335 23.746857272133553 25.389826312262294 62-63 18.81859043586274 34.042839275881356 21.429455630445084 25.70911465781083 64-65 18.737274353206328 35.02311425656611 20.159558801558877 26.08005258866868 66-67 18.78508223382322 35.04893904922077 19.324201458994068 26.841777257961937 68-69 18.76309914586099 35.399387888385675 19.40573096968895 26.431781996064384 70-71 19.631964690465313 34.2005625963094 19.3192926141093 26.848180099115982 72-73 20.425916993567277 31.093477212288334 19.57348540792501 28.907120386219376 74-75 21.06961595758758 29.88013881359622 20.01848286813135 29.031762360684848 76 21.567330143295585 29.915354439943485 19.217060583683 29.300254833077933 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 3.0 17 6.0 18 8.0 19 21.0 20 40.5 21 49.0 22 75.5 23 126.5 24 231.5 25 312.0 26 388.5 27 520.0 28 685.0 29 795.0 30 993.0 31 1331.5 32 1790.0 33 2108.0 34 2414.5 35 3135.5 36 4040.0 37 4530.0 38 5079.0 39 6356.5 40 7676.5 41 13396.5 42 18525.0 43 19077.5 44 18748.0 45 15771.5 46 13677.0 47 12676.0 48 10876.0 49 9477.0 50 8877.0 51 8549.0 52 7580.5 53 6425.0 54 5910.0 55 5482.0 56 4754.0 57 4146.5 58 3839.0 59 3711.5 60 3667.0 61 3679.0 62 3608.0 63 3696.5 64 3865.5 65 4074.5 66 4084.5 67 3966.0 68 4015.5 69 3982.5 70 3965.5 71 4031.0 72 3886.0 73 3551.5 74 3248.5 75 3135.0 76 2957.0 77 2602.0 78 2147.0 79 1869.0 80 1691.0 81 1287.0 82 928.0 83 795.0 84 594.0 85 341.0 86 204.0 87 119.0 88 92.5 89 54.5 90 34.0 91 19.0 92 13.0 93 10.0 94 4.5 95 1.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 234271.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.42966052136202 #Duplication Level Percentage of deduplicated Percentage of total 1 45.224475203023644 15.118388532938349 2 24.088308902395426 16.10527978281563 3 13.548955513560449 13.588109497120856 4 6.818530057714899 9.11764580336448 5 3.303284130956637 5.521383355174136 6 1.7927371162980745 3.595835592113407 7 1.0278870218090812 2.405333993537399 8 0.7418662853056847 1.9840270456010347 9 0.5158588283364829 1.552048695741257 >10 2.8768067827774657 16.074973001353136 >50 0.03958322692680934 0.8302350696415689 >100 0.014045661167577507 1.0854950036496196 >500 0.002553756575923183 0.5715602870180261 >1k 0.0038306348638847748 2.2798383069180566 >5k 0.0 0.0 >10k+ 0.0012768782879615916 10.16984603301305 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 23825 10.16984603301305 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 2668 1.1388520132666868 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 1646 0.7026051026375437 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 1027 0.4383811910138259 TruSeq Adapter, Index 2 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 687 0.2932501248554025 No Hit CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 652 0.2783101621626236 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT 439 0.18738981777514074 No Hit CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 431 0.18397496915964845 No Hit CTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 276 0.11781227723448484 No Hit TTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 248 0.10586030708026174 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0017074243077461573 0.0 2 0.0 0.0 0.0 0.0021342803846826964 0.0 3 0.0 0.0 0.0 0.0021342803846826964 0.0 4 0.0 0.0 0.0 0.002987992538555775 0.0 5 0.0 0.0 0.0 0.0051222729232384715 0.0 6 0.0 0.0 0.0 0.0051222729232384715 0.0 7 0.0 0.0 0.0 0.00640284115404809 0.0 8 0.0 0.0 0.0 0.006829697230984629 0.0 9 0.0 0.0 0.0 0.008537121538730786 0.0 10 0.0 0.0 0.0 0.01280568230809618 0.0 11 0.0 0.0 0.0 0.01280568230809618 0.0 12 0.0 0.0 0.0 0.013232538385032718 0.0 13 0.0 0.0 0.0 0.014086250538905797 0.0 14 0.0 0.0 0.0 0.015366818769715416 0.0 15 0.0 0.0 0.0 0.016220530923588494 0.0 16 0.0 0.0 0.0 0.016647387000525034 0.0 17 0.0 0.0 0.0 0.01835481130827119 0.0 18 0.0 0.0 0.0 0.021769659923763503 0.0 19 0.0 0.0 0.0 0.0239039403084462 0.0 20 0.0 0.0 0.0 0.027318788923938516 0.0 21 0.0 0.0 0.0 0.033721630077986606 0.0 22 0.0 0.0 0.0 0.03841704692428854 0.0 23 0.0 0.0 0.0 0.04183189553978085 0.0 24 0.0 0.0 0.0 0.04396617592446355 0.0 25 0.0 0.0 0.0 0.04866159277076548 0.0 26 0.0 0.0 0.0 0.05122272923238472 0.0 27 0.0 0.0 0.0 0.11482428469592908 0.0 28 0.0 0.0 0.0 0.17885269623640998 0.0 29 0.0 0.0 0.0 0.2693461845469563 0.0 30 0.0 0.0 0.0 0.3470339905494065 0.0 31 0.0 0.0 0.0 0.43966175924463546 0.0 32 0.0 0.0 0.0 0.542107217709405 0.0 33 0.0 0.0 0.0 0.668883472559557 0.0 34 0.0 0.0 0.0 0.8225516602567112 0.0 35 0.0 0.0 0.0 1.0547613661101887 0.0 36 0.0 0.0 0.0 1.4474689568918049 0.0 37 0.0 0.0 0.0 2.0489091692953885 0.0 38 0.0 0.0 0.0 2.797187872165142 0.0 39 0.0 0.0 0.0 3.605226425806011 0.0 40 0.0 0.0 0.0 4.499916763064998 0.0 41 0.0 0.0 0.0 5.563642106790853 0.0 42 0.0 0.0 0.0 6.712311809827081 0.0 43 0.0 0.0 0.0 7.963426971328078 0.0 44 0.0 0.0 0.0 9.026725458976996 0.0 45 0.0 0.0 0.0 10.113501030857426 0.0 46 0.0 0.0 0.0 11.233571376738904 0.0 47 0.0 0.0 0.0 12.342116608543098 0.0 48 0.0 0.0 0.0 13.356326647344314 0.0 49 0.0 0.0 0.0 14.297544296989384 0.0 50 0.0 0.0 0.0 15.148268458323907 0.0 51 0.0 0.0 0.0 16.108267775354182 0.0 52 0.0 0.0 0.0 17.131441791771067 0.0 53 0.0 0.0 0.0 18.222059068343928 0.0 54 0.0 0.0 0.0 19.16413043014287 0.0 55 0.0 0.0 0.0 20.052417926247806 0.0 56 0.0 0.0 0.0 20.861737048119487 0.0 57 0.0 0.0 0.0 21.682154427991513 0.0 58 0.0 0.0 0.0 22.47696044324735 0.0 59 0.0 0.0 0.0 23.197493501116227 0.0 60 0.0 0.0 0.0 23.944064779678236 0.0 61 0.0 0.0 0.0 24.684233217086195 0.0 62 0.0 0.0 0.0 25.455989004187458 0.0 63 0.0 0.0 0.0 26.153044977824827 0.0 64 0.0 0.0 0.0 26.946143568772918 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTTCGT 15 0.0022226875 70.0 8 GGTAACC 20 0.0069451644 52.5 19 CCCTTTA 20 0.0069451644 52.5 15 TGTAGCG 35 2.0823405E-5 50.000004 16 CGTCTTC 3495 0.0 49.871243 48 CCGTCTT 3490 0.0 49.84241 47 TCTTCTG 3500 0.0 49.7 50 CTCGTAT 3515 0.0 49.68706 39 TATGCCG 3530 0.0 49.67422 43 TCTCGTA 3375 0.0 49.674072 38 CGTATGC 3525 0.0 49.64539 41 TCGTATG 3525 0.0 49.64539 40 GCCGTCT 3520 0.0 49.616474 46 TCTTTAT 120 0.0 49.583332 1 CTTTATA 120 0.0 49.583332 2 ATCTCGT 3380 0.0 49.497044 37 GTCTTCT 3515 0.0 49.487915 49 ATGCCGT 3545 0.0 49.365303 44 CTTGAAA 3515 0.0 49.28877 57 TGCCGTC 3555 0.0 49.226437 45 >>END_MODULE