##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779752_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 122432 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.65708311552535 34.0 34.0 34.0 34.0 34.0 2 33.651275810245686 34.0 34.0 34.0 34.0 34.0 3 33.666574098274964 34.0 34.0 34.0 34.0 34.0 4 33.710966087297436 34.0 34.0 34.0 34.0 34.0 5 33.72079194981704 34.0 34.0 34.0 34.0 34.0 6 37.380325405122846 38.0 38.0 38.0 37.0 38.0 7 37.35710435180345 38.0 38.0 38.0 37.0 38.0 8 37.263558546785156 38.0 38.0 38.0 36.0 38.0 9 37.26068348144276 38.0 38.0 38.0 36.0 38.0 10-11 37.181100529273394 38.0 38.0 38.0 36.0 38.0 12-13 37.1535546262415 38.0 38.0 38.0 36.0 38.0 14-15 37.17178107030841 38.0 38.0 38.0 36.0 38.0 16-17 37.13017021693675 38.0 38.0 38.0 36.0 38.0 18-19 37.11864545216937 38.0 38.0 38.0 36.0 38.0 20-21 37.14901741374804 38.0 38.0 38.0 36.0 38.0 22-23 37.102432370622054 38.0 38.0 38.0 36.0 38.0 24-25 37.10556063774177 38.0 38.0 38.0 36.0 38.0 26-27 37.016756240198646 38.0 38.0 38.0 35.5 38.0 28-29 36.92402313120753 38.0 37.5 38.0 35.5 38.0 30-31 36.762705011761625 38.0 37.0 38.0 34.5 38.0 32-33 36.81440718112911 38.0 37.0 38.0 35.0 38.0 34-35 36.81675950731835 38.0 37.0 38.0 34.5 38.0 36-37 36.8206963865656 38.0 37.0 38.0 35.0 38.0 38-39 35.98749918322007 38.0 37.0 38.0 33.0 38.0 40-41 36.650834749085206 38.0 37.0 38.0 34.0 38.0 42-43 36.9406037637219 38.0 37.0 38.0 35.0 38.0 44-45 36.945859742550965 38.0 38.0 38.0 35.0 38.0 46-47 36.964196451907995 38.0 38.0 38.0 35.5 38.0 48-49 36.934584095661265 38.0 38.0 38.0 35.0 38.0 50-51 36.868657703868266 38.0 37.5 38.0 35.0 38.0 52-53 36.851395060115 38.0 37.5 38.0 35.0 38.0 54-55 36.85667554234187 38.0 38.0 38.0 35.0 38.0 56-57 36.86711398980658 38.0 37.0 38.0 35.0 38.0 58-59 36.7685368204391 38.0 37.0 38.0 35.0 38.0 60-61 36.8136026529012 38.0 37.0 38.0 35.0 38.0 62-63 36.85638150156822 38.0 37.5 38.0 35.0 38.0 64-65 36.88235101934135 38.0 38.0 38.0 35.0 38.0 66-67 36.80710108468374 38.0 38.0 38.0 35.0 38.0 68-69 36.5686585206482 38.0 37.0 38.0 34.0 38.0 70-71 35.20987568609514 38.0 36.0 38.0 28.0 38.0 72-73 32.947534141400936 38.0 33.5 38.0 16.0 38.0 74-75 32.65266842002091 38.0 34.0 38.0 11.0 38.0 76 32.32932566649242 38.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 10.0 22 7.0 23 15.0 24 38.0 25 69.0 26 129.0 27 239.0 28 407.0 29 661.0 30 1140.0 31 1840.0 32 2877.0 33 4504.0 34 7895.0 35 17074.0 36 19655.0 37 65870.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.661395713538944 16.032573183481443 11.406331677992682 39.899699424986935 2 16.870589388395192 15.382416361735492 44.71706743335076 23.029926816518557 3 16.531625718766335 18.599712493465763 40.32850888656561 24.5401529012023 4 12.56534239414532 29.235820700470466 31.437042603240982 26.761794302143233 5 12.78914009409305 29.88271040250915 43.5474385781495 13.780710925248302 6 25.183775483533715 44.68276267642447 15.569458964976477 14.564002875065343 7 23.649862780972295 25.03675509670674 18.597262153685314 32.716119968635645 8 20.541198379508625 43.5376372190277 15.797340564558285 20.123823836905384 9 19.996406168322007 15.919040773653947 16.141204913748037 47.943348144276 10-11 21.857030841610037 28.58770582854156 27.750098013591217 21.805165316257188 12-13 21.424954260324096 17.604466152639834 29.331792341871406 31.63878724516466 14-15 20.39213604286461 17.885030057501304 19.08773849973863 42.63509539989545 16-17 29.707102718243593 27.895893230527967 18.413895060115003 23.983108991113433 18-19 30.202071353894404 21.506223863042344 18.61849843178254 29.67320635128071 20-21 20.559984317825407 20.039287114479876 18.74101542080502 40.6597131468897 22-23 21.1035513591218 28.765355462624147 18.819426293779404 31.311666884474647 24-25 29.69485101934135 28.976493073706223 18.669547177208575 22.659108729743856 26-27 29.360379639309986 30.97066126502875 19.07589519079979 20.593063904861474 28-29 21.05822007318348 30.212281102979617 20.060523392577103 28.668975431259803 30-31 20.589796785154206 30.530416884474647 28.27079521693675 20.608991113434396 32-33 37.44364218504966 20.847899242028227 21.82027574490329 19.88818282801882 34-35 23.504475953998956 28.018410219550443 28.999362911657084 19.477750914793518 36-37 29.18027966544694 29.23827104025091 20.937745033978043 20.643704260324096 38-39 20.23939819654992 21.482128855201253 29.296670805018294 28.981802143230528 40-41 19.692155645582854 18.75898457919498 31.093178254051228 30.455681521170934 42-43 28.50766139571354 18.941943282801883 30.119984971249348 22.430410350235235 44-45 19.51042211186618 28.03311225823314 31.486049398849975 20.970416231050706 46-47 28.131125849451124 19.236392446419238 23.386859644537374 29.245622059592264 48-49 27.164466806063775 18.66832200731835 22.028146236278097 32.13906495033978 50-51 19.39484775222164 18.700176424464193 31.473389309984316 30.43158651332985 52-53 17.477865263983272 18.93540904338735 40.38895060115003 23.197775091479354 54-55 17.348405645582854 19.014228306325144 33.0942890747517 30.543076973340305 56-57 26.136549268165187 18.914989545216937 24.266531625718766 30.681929560899114 58-59 18.343651986408783 19.70726607422896 38.46870099320439 23.480380946157865 60-61 26.160644276006273 28.868678123366443 23.131615917407213 21.839061683220073 62-63 17.53953214845792 40.216610036591746 20.09891204913748 22.14494576581286 64-65 16.846494380554102 41.7921785154208 19.14246275483534 22.218864349189754 66-67 17.11439819654992 41.60758625196027 18.72713016204914 22.55088538944067 68-69 17.015567825405125 42.09969615786722 18.636059200209097 22.248676816518557 70-71 17.49256730266597 40.123088734971255 19.24986931521171 23.13447464715107 72-73 18.27871798222687 34.8940636434919 20.8711774699425 25.956040904338735 74-75 18.689966675378987 32.97503920543649 22.141678646105593 26.193315473078933 76 18.833311552535285 33.54106769472033 21.863565081024568 25.762055671719814 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.5 15 2.5 16 2.5 17 3.0 18 8.0 19 17.0 20 29.0 21 37.0 22 49.0 23 83.0 24 136.0 25 167.0 26 178.5 27 268.5 28 429.5 29 512.0 30 546.5 31 698.5 32 1003.5 33 1191.0 34 1425.0 35 1812.0 36 2114.5 37 2264.0 38 2783.5 39 7271.0 40 12036.0 41 11884.0 42 10935.0 43 9681.5 44 7770.5 45 6452.5 46 5792.0 47 5755.0 48 5271.5 49 4616.5 50 4408.0 51 4120.0 52 3398.0 53 2793.0 54 2622.0 55 2494.5 56 2225.5 57 1910.5 58 1737.0 59 1586.5 60 1451.0 61 1471.5 62 1477.0 63 1454.0 64 1498.0 65 1540.0 66 1476.5 67 1438.0 68 1443.0 69 1489.0 70 1484.0 71 1438.0 72 1368.5 73 1307.5 74 1245.5 75 1175.0 76 1054.5 77 842.0 78 713.5 79 677.0 80 587.0 81 416.5 82 292.0 83 248.0 84 202.0 85 113.0 86 57.0 87 44.0 88 35.5 89 21.0 90 10.0 91 3.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 122432.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.686977260846838 #Duplication Level Percentage of deduplicated Percentage of total 1 47.66593633200154 15.103894406691062 2 23.07256089702281 14.621994249869315 3 11.92421703827813 11.335271824359644 4 6.163165356360356 7.811683220073183 5 3.2169093955406627 5.0967067433350755 6 1.9151952571207629 3.6412049137480396 7 1.3558448253640933 3.007383690538421 8 1.0027065343472097 2.5418191322530057 9 0.6985436267560253 1.9921262415054888 >10 2.9282123985049617 13.676163094615786 >50 0.015465910555483955 0.3316126502875065 >100 0.028354169351720585 2.0893230527966544 >500 0.005155303518494652 1.1712624150548876 >1k 0.005155303518494652 2.693740198640878 >5k 0.0 0.0 >10k+ 0.002577651759247326 14.885814166231052 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 18225 14.885814166231052 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 1992 1.627025614218505 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 1306 1.066714584422373 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 898 0.7334683742812337 RNA PCR Primer, Index 47 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 536 0.4377940407736539 No Hit CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 496 0.4051228437009932 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT 409 0.3340629900679561 No Hit CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 385 0.31446027182435965 No Hit CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 206 0.16825666492420283 No Hit TTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 182 0.14865394668060636 No Hit TATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCT 173 0.1413029273392577 No Hit TCTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 171 0.13966936748562467 No Hit CTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 160 0.13068478829064298 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT 142 0.11598274960794563 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCG 125 0.10209749085206482 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.167799268165185E-4 0.0 2 0.0 0.0 0.0 8.167799268165185E-4 0.0 3 0.0 0.0 0.0 0.001633559853633037 0.0 4 0.0 0.0 0.0 0.003267119707266074 0.0 5 0.0 0.0 0.0 0.007351019341348667 0.0 6 0.0 0.0 0.0 0.007351019341348667 0.0 7 0.0 0.0 0.0 0.008167799268165186 0.0 8 0.0 0.0 0.0 0.008984579194981704 0.0 9 0.0 0.0 0.0 0.012251698902247778 0.0 10 0.0 0.0 0.0 0.01715237846314689 0.0 11 0.0 0.0 0.0 0.01715237846314689 0.0 12 0.0 0.0 0.0 0.020419498170412963 0.0 13 0.0 0.0 0.0 0.022053058024046 0.0 14 0.0 0.0 0.0 0.022053058024046 0.0 15 0.0 0.0 0.0 0.02286983795086252 0.0 16 0.0 0.0 0.0 0.02286983795086252 0.0 17 0.0 0.0 0.0 0.023686617877679037 0.0 18 0.0 0.0 0.0 0.029404077365394667 0.0 19 0.0 0.0 0.0 0.03348797699947726 0.0 20 0.0 0.0 0.0 0.03430475692629378 0.0 21 0.0 0.0 0.0 0.03920543648719289 0.0 22 0.0 0.0 0.0 0.040838996340825925 0.0 23 0.0 0.0 0.0 0.044106116048092 0.0 24 0.0 0.0 0.0 0.04573967590172504 0.0 25 0.0 0.0 0.0 0.047373235755358074 0.0 26 0.0 0.0 0.0 0.05145713538944067 0.0 27 0.0 0.0 0.0 0.07677731312075274 0.0 28 0.0 0.0 0.0 0.12006664924202823 0.0 29 0.0 0.0 0.0 0.1674398849973863 0.0 30 0.0 0.0 0.0 0.21726346053319393 0.0 31 0.0 0.0 0.0 0.2687205959226346 0.0 32 0.0 0.0 0.0 0.3552992681651856 0.0 33 0.0 0.0 0.0 0.4622974385781495 0.0 34 0.0 0.0 0.0 0.6477064819654992 0.0 35 0.0 0.0 0.0 0.8715041819132253 0.0 36 0.0 0.0 0.0 1.2031168322007317 0.0 37 0.0 0.0 0.0 1.6670478306325143 0.0 38 0.0 0.0 0.0 2.2298092002090955 0.0 39 0.0 0.0 0.0 2.8023719289074753 0.0 40 0.0 0.0 0.0 3.379835337166754 0.0 41 0.0 0.0 0.0 4.001404861474124 0.0 42 0.0 0.0 0.0 4.737323575535807 0.0 43 0.0 0.0 0.0 5.497745687401986 0.0 44 0.0 0.0 0.0 6.229580501829587 0.0 45 0.0 0.0 0.0 6.95161395713539 0.0 46 0.0 0.0 0.0 7.692433350757971 0.0 47 0.0 0.0 0.0 8.410382906429692 0.0 48 0.0 0.0 0.0 9.107096184004181 0.0 49 0.0 0.0 0.0 9.80871014113957 0.0 50 0.0 0.0 0.0 10.435997124934657 0.0 51 0.0 0.0 0.0 11.064917668583377 0.0 52 0.0 0.0 0.0 11.724875849451124 0.0 53 0.0 0.0 0.0 12.421589127025614 0.0 54 0.0 0.0 0.0 13.083180867746995 0.0 55 0.0 0.0 0.0 13.736604809200209 0.0 56 0.0 0.0 0.0 14.359807893361213 0.0 57 0.0 0.0 0.0 14.908684004181913 0.0 58 0.0 0.0 0.0 15.422438578149503 0.0 59 0.0 0.0 0.0 15.949261630946157 0.0 60 0.0 0.0 0.0 16.49568740198641 0.0 61 0.0 0.0 0.0 17.0143426555149 0.0 62 0.0 0.0 0.0 17.55995164662833 0.0 63 0.0 0.0 0.0 18.023882645060116 0.0 64 0.0 0.0 0.0 18.600529273392578 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAATACT 15 0.0022201454 70.0 8 TGCGCCA 15 0.0022201454 70.0 56 CGATGGG 15 0.0022201454 70.0 58 TTGCCGG 15 0.0022201454 70.0 13 TCTTTAT 85 0.0 65.882355 1 CTTTATA 95 0.0 58.947365 2 ATCGTAT 30 8.335632E-6 58.333332 39 CTATACA 70 0.0 55.0 1 TATATCG 20 0.0069372808 52.5 17 TCTAGCA 20 0.0069372808 52.5 3 GACCATA 20 0.0069372808 52.5 57 ACGATGT 20 0.0069372808 52.5 22 ACCTATG 20 0.0069372808 52.5 63 TACGATG 20 0.0069372808 52.5 21 CACCGTG 20 0.0069372808 52.5 21 GATTATC 20 0.0069372808 52.5 66 ATTTGGC 20 0.0069372808 52.5 8 GCACTGG 20 0.0069372808 52.5 1 GTACGAT 20 0.0069372808 52.5 20 TCTCGTA 2530 0.0 49.110672 38 >>END_MODULE