##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779750_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 112411 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.67541432777931 34.0 34.0 34.0 34.0 34.0 2 33.67248756794264 34.0 34.0 34.0 34.0 34.0 3 33.68664098709201 34.0 34.0 34.0 34.0 34.0 4 33.72793587816139 34.0 34.0 34.0 34.0 34.0 5 33.734652302710586 34.0 34.0 34.0 34.0 34.0 6 37.403412477426585 38.0 38.0 38.0 37.0 38.0 7 37.3963757995214 38.0 38.0 38.0 37.0 38.0 8 37.299552534894275 38.0 38.0 38.0 36.0 38.0 9 37.29301402887618 38.0 38.0 38.0 36.0 38.0 10-11 37.21287062654011 38.0 38.0 38.0 36.0 38.0 12-13 37.18725480602432 38.0 38.0 38.0 36.0 38.0 14-15 37.218652978801 38.0 38.0 38.0 36.0 38.0 16-17 37.15619912642001 38.0 38.0 38.0 36.0 38.0 18-19 37.13348337796123 38.0 38.0 38.0 36.0 38.0 20-21 37.16038465986425 38.0 38.0 38.0 36.0 38.0 22-23 37.149936394125135 38.0 38.0 38.0 36.0 38.0 24-25 37.1049363496455 38.0 38.0 38.0 35.5 38.0 26-27 37.01144905747658 38.0 37.5 38.0 35.0 38.0 28-29 36.899573885118 38.0 37.0 38.0 35.0 38.0 30-31 36.742987785892836 38.0 37.0 38.0 34.5 38.0 32-33 36.68091201039044 38.0 37.0 38.0 34.0 38.0 34-35 36.52761740399072 38.0 37.0 38.0 34.0 38.0 36-37 36.72504914999422 38.0 37.0 38.0 34.0 38.0 38-39 35.4710882386955 38.0 36.0 38.0 31.0 38.0 40-41 36.47188887208547 38.0 37.0 38.0 34.0 38.0 42-43 36.92967325261763 38.0 37.0 38.0 35.0 38.0 44-45 36.9238553166505 38.0 38.0 38.0 35.0 38.0 46-47 36.96263710846803 38.0 38.0 38.0 35.5 38.0 48-49 36.94158489827508 38.0 38.0 38.0 35.5 38.0 50-51 36.83508731351914 38.0 37.5 38.0 34.0 38.0 52-53 36.81757568209517 38.0 37.5 38.0 35.0 38.0 54-55 36.81949275426782 38.0 37.5 38.0 35.0 38.0 56-57 36.83757372499133 38.0 37.0 38.0 35.0 38.0 58-59 36.72012970260918 38.0 37.0 38.0 34.5 38.0 60-61 36.751990463566734 38.0 37.0 38.0 34.5 38.0 62-63 36.795002268461275 38.0 37.0 38.0 35.0 38.0 64-65 36.830230137619985 38.0 38.0 38.0 35.0 38.0 66-67 36.733851669320615 38.0 37.5 38.0 34.0 38.0 68-69 36.45959470158614 38.0 37.0 38.0 34.0 38.0 70-71 34.524663956374376 38.0 34.0 38.0 27.5 38.0 72-73 31.23720098566866 38.0 23.5 38.0 11.0 38.0 74-75 30.831600110309488 38.0 23.0 38.0 11.0 38.0 76 30.485477399898585 37.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 3.0 20 2.0 21 4.0 22 8.0 23 18.0 24 27.0 25 76.0 26 119.0 27 261.0 28 405.0 29 767.0 30 1197.0 31 1815.0 32 2925.0 33 4505.0 34 8307.0 35 19028.0 36 19897.0 37 53046.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.556618124560764 12.625098967182927 11.239113609878038 45.579169298378275 2 16.251078631094824 13.028974032790385 47.654588963713515 23.065358372401278 3 16.170125699442224 15.099056142192492 44.952896068890055 23.77792208947523 4 12.780777681899458 33.88369465621692 27.514211242671983 25.821316419211644 5 13.041428329967708 26.30258604584961 46.59330492567453 14.062680698508153 6 24.668404337653786 46.43228865502486 14.086699700207275 14.812607307114073 7 22.67304801131562 22.682833530526374 15.526950209499072 39.11716824865894 8 19.95979041197036 46.94469402460613 13.133945966142106 19.961569597281407 9 18.362082002650986 14.95850050261985 13.08323918477729 53.59617830995187 10-11 21.290176228305057 29.383690208253643 27.74239175881364 21.58374180462766 12-13 20.538025638060333 14.726316819528337 30.255046214338456 34.480611328072875 14-15 19.606622127727714 14.215690635258117 16.74346816592682 49.43421907108735 16-17 33.176913291403864 27.703249681970625 14.594212310183167 24.52562471644234 18-19 34.10342404213111 18.469722713969272 15.001200950084955 32.42565229381466 20-21 20.43216411205309 15.964629796016405 15.191573778366884 48.411632313563615 22-23 20.48509487505671 29.050982555088023 14.92603037069326 35.537892199162 24-25 33.10352189732322 29.11325404097464 14.785919527448382 22.997304534253765 26-27 33.34015354369234 31.050786844703808 15.673732997660373 19.935326613943474 28-29 20.260917525864908 30.64646698276859 16.47036322068125 32.62225227068525 30-31 18.880714520820916 18.87715615019882 29.034969887288607 33.207159441691644 32-33 18.970563379028743 28.46740977306491 17.661527786426596 34.90049906147975 34-35 19.639537055982064 16.973872663707287 29.189314213021856 34.19727606728879 36-37 32.193913407050914 27.11789771463647 17.746928681356806 22.941260196955817 38-39 20.050084066505946 18.04894538790688 29.821814591098732 32.07915595448844 40-41 18.86203307505493 15.123075143891612 31.60633745807795 34.40855432297551 42-43 31.50447909902056 15.021661581161986 30.881764240154435 22.59209507966302 44-45 19.537233900596917 27.878054638780903 32.47902785314604 20.105683607476138 46-47 31.061461956570085 16.183024792947307 21.05354458193593 31.70196866854667 48-49 30.42451361521559 14.953162946686712 18.676108210050618 35.94621522804708 50-51 19.371324870341873 15.25740363487559 31.815836528453623 33.55543496632892 52-53 16.84799530295078 15.261406801825444 44.76163364795261 23.128964247271174 54-55 16.647836955458096 15.2191511506881 34.54999955520367 33.58301233865013 56-57 29.197320546921564 15.425536646769444 21.75810196511018 33.61904084119882 58-59 18.191725009118326 16.316018894948 42.380638905445196 23.111617190488477 60-61 29.38680378254797 29.041641832205034 20.908096182757916 20.66345820248908 62-63 17.075731022764675 45.45151275231072 16.37917997349014 21.093576251434467 64-65 16.183024792947307 47.10259672096147 15.682628924215603 21.031749561875618 66-67 16.3854071220788 47.229808470701265 15.243170152387222 21.14161425483271 68-69 15.940165997989519 47.61633647952602 15.270747524708437 21.17274999777602 70-71 16.30890215370382 44.991593349405306 16.020674133314355 22.67883036357652 72-73 16.87468308261647 38.220903648219476 18.39588652356086 26.508526745603188 74-75 17.16958304792236 35.07130085134017 19.73694745176184 28.022168648975633 76 17.32303778100008 35.36753520562934 19.36732170339202 27.942105309978558 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.0 16 1.5 17 2.0 18 3.5 19 13.0 20 21.0 21 21.0 22 27.0 23 44.5 24 79.5 25 103.0 26 124.5 27 201.5 28 257.5 29 258.0 30 322.5 31 426.0 32 625.5 33 786.0 34 894.5 35 1129.0 36 1372.0 37 1489.0 38 1691.5 39 2315.0 40 7622.5 41 13073.5 42 13638.0 43 12146.0 44 9021.5 45 6248.0 46 5107.0 47 4495.5 48 3522.5 49 3038.5 50 2916.0 51 2813.5 52 2368.5 53 1972.5 54 1919.0 55 1874.5 56 1836.5 57 1838.0 58 1833.0 59 1781.5 60 1802.5 61 1968.0 62 2061.0 63 2018.0 64 2002.5 65 2007.5 66 1958.5 67 1932.0 68 2025.5 69 2068.0 70 1893.0 71 1769.0 72 1787.0 73 1739.0 74 1625.0 75 1577.0 76 1547.5 77 1357.0 78 1001.5 79 807.0 80 772.5 81 609.5 82 405.5 83 330.0 84 269.5 85 160.0 86 93.0 87 75.0 88 55.0 89 24.5 90 9.0 91 4.5 92 5.0 93 2.5 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 112411.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.844552579373904 #Duplication Level Percentage of deduplicated Percentage of total 1 49.47299250887107 16.743912962254583 2 25.141280063083194 17.01790750015568 3 12.95571034301485 13.154406597219134 4 5.929819950059141 8.027684123439876 5 2.6968064134577476 4.563610322833175 6 1.2932054146405572 2.6260775191040024 7 0.7727690892364305 1.8307816850664083 8 0.48889472992508876 1.3237138714182777 9 0.2917597581811013 0.888703062867513 >10 0.8963070048626627 4.360783197373923 >50 0.013142331449599158 0.31758457802172385 >100 0.02891312918911815 1.8850468370533133 >500 0.010513865159679326 2.3885562800793516 >1k 0.005256932579839663 3.785216749250518 >5k 0.0 0.0 >10k+ 0.0026284662899198315 21.08601471386252 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 23703 21.08601471386252 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 2648 2.3556413518249992 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 1607 1.4295753974255188 No Hit ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT 815 0.7250180142512743 RNA PCR Primer, Index 42 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 747 0.6645257136757079 No Hit CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 596 0.5301972226917294 RNA PCR Primer, Index 32 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT 527 0.46881532946064 No Hit CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 375 0.3335972458211385 No Hit CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 249 0.22150857122523598 No Hit CTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 221 0.19659997687059097 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 209 0.18592486500431452 No Hit TTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 189 0.1681330118938538 RNA PCR Primer, Index 32 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGAGCTCGTATGCCGT 159 0.14144523222816272 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT 159 0.14144523222816272 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCG 156 0.13877645426159363 No Hit TATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCT 150 0.1334388983284554 RNA PCR Primer, Index 42 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT 133 0.11831582318456378 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACCCGATCTCGTATGCCGT 119 0.10586152600724127 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001779185311046072 0.0 2 0.0 0.0 0.0 0.001779185311046072 0.0 3 0.0 0.0 0.0 0.003558370622092144 0.0 4 0.0 0.0 0.0 0.006227148588661252 0.0 5 0.0 0.0 0.0 0.012454297177322503 0.0 6 0.0 0.0 0.0 0.012454297177322503 0.0 7 0.0 0.0 0.0 0.012454297177322503 0.0 8 0.0 0.0 0.0 0.01334388983284554 0.0 9 0.0 0.0 0.0 0.01779185311046072 0.0 10 0.0 0.0 0.0 0.023129409043598937 0.0 11 0.0 0.0 0.0 0.02846696497673715 0.0 12 0.0 0.0 0.0 0.029356557632260187 0.0 13 0.0 0.0 0.0 0.032914928254352334 0.0 14 0.0 0.0 0.0 0.03469411356539841 0.0 15 0.0 0.0 0.0 0.040921262154059654 0.0 16 0.0 0.0 0.0 0.040921262154059654 0.0 17 0.0 0.0 0.0 0.040921262154059654 0.0 18 0.0 0.0 0.0 0.04270044746510573 0.0 19 0.0 0.0 0.0 0.046258818087197874 0.0 20 0.0 0.0 0.0 0.04892759605376698 0.0 21 0.0 0.0 0.0 0.05159637402033609 0.0 22 0.0 0.0 0.0 0.05782352260899734 0.0 23 0.0 0.0 0.0 0.06138189323108948 0.0 24 0.0 0.0 0.0 0.06227148588661252 0.0 25 0.0 0.0 0.0 0.07116741244184288 0.0 26 0.0 0.0 0.0 0.08184252430811931 0.0 27 0.0 0.0 0.0 0.15656830737205435 0.0 28 0.0 0.0 0.0 0.21350223732552864 0.0 29 0.0 0.0 0.0 0.2802216864897563 0.0 30 0.0 0.0 0.0 0.36028502548682956 0.0 31 0.0 0.0 0.0 0.43412121589524155 0.0 32 0.0 0.0 0.0 0.5230804814475452 0.0 33 0.0 0.0 0.0 0.6565193797760006 0.0 34 0.0 0.0 0.0 0.8486713933689763 0.0 35 0.0 0.0 0.0 1.1315618578253017 0.0 36 0.0 0.0 0.0 1.5452224426435135 0.0 37 0.0 0.0 0.0 2.1118929642116875 0.0 38 0.0 0.0 0.0 2.708809636067645 0.0 39 0.0 0.0 0.0 3.2754801576358186 0.0 40 0.0 0.0 0.0 3.8910782752577595 0.0 41 0.0 0.0 0.0 4.546708062378237 0.0 42 0.0 0.0 0.0 5.231694407130974 0.0 43 0.0 0.0 0.0 5.93358301233865 0.0 44 0.0 0.0 0.0 6.667496953145155 0.0 45 0.0 0.0 0.0 7.346256149309231 0.0 46 0.0 0.0 0.0 8.15489587317967 0.0 47 0.0 0.0 0.0 8.873686738842284 0.0 48 0.0 0.0 0.0 9.526647747996192 0.0 49 0.0 0.0 0.0 10.139577087651565 0.0 50 0.0 0.0 0.0 10.760512761206643 0.0 51 0.0 0.0 0.0 11.350312691818417 0.0 52 0.0 0.0 0.0 11.962352438818264 0.0 53 0.0 0.0 0.0 12.536139701630624 0.0 54 0.0 0.0 0.0 13.175756820951687 0.0 55 0.0 0.0 0.0 13.73086263799806 0.0 56 0.0 0.0 0.0 14.300201937532803 0.0 57 0.0 0.0 0.0 14.828619974913487 0.0 58 0.0 0.0 0.0 15.324123084039819 0.0 59 0.0 0.0 0.0 15.832970082998994 0.0 60 0.0 0.0 0.0 16.246630667817207 0.0 61 0.0 0.0 0.0 16.737685813665923 0.0 62 0.0 0.0 0.0 17.258097517146897 0.0 63 0.0 0.0 0.0 17.74114632909591 0.0 64 0.0 0.0 0.0 18.240207808844332 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAAGC 15 0.0022196718 70.0 31 ATAGATA 15 0.0022196718 70.0 61 TCGATAT 15 0.0022196718 70.0 34 ATATCGT 15 0.0022196718 70.0 37 ACAATTG 15 0.0022196718 70.0 42 CTCGATA 15 0.0022196718 70.0 33 TCTTTAT 120 0.0 61.25 1 CTTTATA 130 0.0 56.538464 2 ACCCGAT 25 2.3817352E-4 56.000004 32 CTATACA 95 0.0 55.263157 1 TCTTAAT 45 2.6742782E-8 54.444447 1 ATCTCGT 3120 0.0 53.173077 37 TCTCGTA 3130 0.0 53.115017 38 CGATCTC 3105 0.0 52.640903 35 TCGATCT 3070 0.0 52.557007 34 GATCTCG 3150 0.0 52.555557 36 TCATTGA 20 0.0069358116 52.5 28 TGAACTA 20 0.0069358116 52.5 32 GTAGGTA 20 0.0069358116 52.5 13 TTTCACA 20 0.0069358116 52.5 21 >>END_MODULE