##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779749_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 146890 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.67737762951869 34.0 34.0 34.0 34.0 34.0 2 33.66855470079651 34.0 34.0 34.0 34.0 34.0 3 33.69293348764381 34.0 34.0 34.0 34.0 34.0 4 33.73080536455851 34.0 34.0 34.0 34.0 34.0 5 33.732241813602016 34.0 34.0 34.0 34.0 34.0 6 37.41017768398121 38.0 38.0 38.0 37.0 38.0 7 37.40291374497924 38.0 38.0 38.0 37.0 38.0 8 37.295418340254614 38.0 38.0 38.0 36.0 38.0 9 37.310375110627 38.0 38.0 38.0 36.0 38.0 10-11 37.22149908094492 38.0 38.0 38.0 36.0 38.0 12-13 37.19861460957179 38.0 38.0 38.0 36.0 38.0 14-15 37.216396623323575 38.0 38.0 38.0 36.0 38.0 16-17 37.166549799169445 38.0 38.0 38.0 36.0 38.0 18-19 37.14238545850637 38.0 38.0 38.0 36.0 38.0 20-21 37.193747021580776 38.0 38.0 38.0 36.0 38.0 22-23 37.15288310981006 38.0 38.0 38.0 36.0 38.0 24-25 37.132330315201855 38.0 38.0 38.0 36.0 38.0 26-27 37.01192388862414 38.0 38.0 38.0 35.5 38.0 28-29 36.953512832731974 38.0 38.0 38.0 35.5 38.0 30-31 36.821815644359724 38.0 37.5 38.0 34.5 38.0 32-33 36.72508339573831 38.0 37.0 38.0 34.0 38.0 34-35 36.708155762815714 38.0 37.0 38.0 34.0 38.0 36-37 36.72484852610798 38.0 37.0 38.0 34.5 38.0 38-39 35.979263394376744 38.0 37.0 38.0 33.0 38.0 40-41 36.664190891143036 38.0 37.0 38.0 34.5 38.0 42-43 36.946963714344065 38.0 37.5 38.0 35.0 38.0 44-45 36.96297229219144 38.0 38.0 38.0 35.0 38.0 46-47 36.9761079719518 38.0 38.0 38.0 35.5 38.0 48-49 36.94947920212404 38.0 38.0 38.0 35.5 38.0 50-51 36.85741711484785 38.0 37.5 38.0 35.0 38.0 52-53 36.86271699911498 38.0 38.0 38.0 35.0 38.0 54-55 36.85590918374294 38.0 38.0 38.0 35.0 38.0 56-57 36.85875825447614 38.0 38.0 38.0 35.0 38.0 58-59 36.76488528831098 38.0 37.0 38.0 34.5 38.0 60-61 36.80691333651031 38.0 37.0 38.0 35.0 38.0 62-63 36.85744094220165 38.0 37.5 38.0 35.0 38.0 64-65 36.88731363605419 38.0 38.0 38.0 35.0 38.0 66-67 36.78935938457349 38.0 38.0 38.0 34.5 38.0 68-69 36.54035332561781 38.0 37.0 38.0 34.0 38.0 70-71 34.75985771665872 38.0 35.0 38.0 27.5 38.0 72-73 31.8624446865001 38.0 25.5 38.0 11.0 38.0 74-75 31.49351215195044 38.0 25.0 38.0 11.0 38.0 76 31.1808087684662 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 3.0 21 7.0 22 17.0 23 22.0 24 48.0 25 98.0 26 153.0 27 310.0 28 533.0 29 859.0 30 1457.0 31 2246.0 32 3478.0 33 5481.0 34 9881.0 35 22646.0 36 26426.0 37 73225.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.582748995847233 14.395125604193614 11.535843147933827 43.486282252025326 2 16.050105521138267 14.489754237865068 47.20403022670025 22.25611001429641 3 15.633467220368983 16.378923003608143 44.67969228674518 23.307917489277692 4 12.249302198924365 32.81230853019267 29.31649533664647 25.621893934236507 5 12.529784192252706 28.186397984886653 45.926884062904215 13.35693375995643 6 24.107835795493227 47.00183811015045 14.78180951732589 14.10851657703043 7 22.16488528831098 23.875008509769216 16.999114984001633 36.96099121791817 8 19.43903601334332 46.80236911974947 14.12417455238614 19.63442031452107 9 18.711280550071482 15.047995098372931 14.446184219483968 51.79454013207162 10-11 21.223024031588263 29.420995302607395 28.18469603104364 21.171284634760706 12-13 20.571516100483358 16.03002246579073 30.145346858193207 33.25311457553271 14-15 19.671182517530124 15.663081217237387 17.701341139628294 46.96439512560419 16-17 31.871468445775754 27.90183130233508 16.27714616379604 23.94955408809313 18-19 32.062427666961675 19.67867111443938 16.74109878140105 31.5178024371979 20-21 20.284226291782968 17.801075634828784 16.477295935734222 45.437402137654026 22-23 20.327796310164068 29.209272244536727 16.431002791204303 34.0319286540949 24-25 31.994689904009803 29.454693988699027 16.32514126216897 22.2254748451222 26-27 31.837429368915515 30.941520865954114 17.119272925318267 20.101776839812104 28-29 20.143644904350193 31.18013479474437 17.769759684117368 30.906460616788074 30-31 19.351555585812513 30.815576281571243 29.554428483899514 20.278439648716727 32-33 29.45809789638505 32.205732180543265 19.092858601674724 19.243311321396963 34-35 21.740758390632443 18.77323166995711 40.660358091088575 18.825651848321872 36-37 18.97678534958132 39.434610933351486 21.79590169514603 19.792702021921166 38-39 18.816120906801007 20.505480291374496 30.001361563074408 30.67703723875009 40-41 18.894070392810946 16.513717747974674 31.738716046020834 32.85349581319355 42-43 30.37340867315678 16.549458778677923 30.962965484376063 22.114167063789232 44-45 19.164340663081216 28.273878412417453 32.316699571107634 20.245081353393697 46-47 29.72019878820886 17.333378718769147 22.102253386888147 30.84416910613384 48-49 29.103070324732794 16.34522431751651 20.30192661175029 34.24977874600041 50-51 18.99142215263122 16.843556402750355 31.869766491932737 32.29525495268568 52-53 16.678466879978217 16.606304037034516 43.6837088978147 23.031520185172578 54-55 16.682551569201443 16.824494519708626 34.18782762611478 32.30512628497515 56-57 27.989992511403088 16.742119953706855 22.60671250595684 32.661175028933215 58-59 17.972972972972972 17.581863979848865 41.43304513581592 23.012117911362242 60-61 28.065218871264214 29.229695690652868 21.61243107086936 21.092654367213562 62-63 16.862618285792088 44.0176322418136 17.54169786915379 21.57805160324052 64-65 16.123289536387773 45.57628157124379 16.794199741303014 21.506229151065423 66-67 16.39015589897202 45.57253727278916 16.683232350738646 21.35407447750017 68-69 16.191367690108244 45.79345088161209 16.5749880863231 21.440193341956565 70-71 16.46810538498196 43.31506569541834 17.47532166927633 22.74150725032337 72-73 17.347675131050448 38.009054394444824 19.2055279460821 25.43774252842263 74-75 17.621008918238136 35.454762066852744 20.66342160800599 26.260807406903126 76 17.31499761726462 35.75736946014024 21.03887262577439 25.888760296820752 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 1.0 11 0.5 12 0.0 13 0.5 14 0.5 15 2.5 16 5.5 17 6.0 18 6.0 19 17.0 20 41.0 21 54.0 22 62.5 23 87.0 24 123.0 25 143.0 26 216.0 27 318.5 28 422.5 29 497.0 30 587.0 31 764.5 32 1076.0 33 1300.0 34 1449.0 35 2019.0 36 8242.0 37 14044.0 38 14815.5 39 14154.0 40 10958.0 41 7939.0 42 6683.0 43 6030.0 44 5522.5 45 5453.5 46 5239.0 47 5291.0 48 5004.0 49 4443.5 50 4222.0 51 4127.5 52 3661.5 53 3099.5 54 2909.0 55 2824.0 56 2659.0 57 2427.0 58 2275.0 59 2216.0 60 2165.0 61 2133.0 62 2093.0 63 2049.0 64 2040.5 65 2130.0 66 2117.5 67 2051.0 68 2134.5 69 2128.0 70 1994.5 71 1951.0 72 1899.0 73 1802.0 74 1690.5 75 1624.0 76 1519.5 77 1270.5 78 1035.0 79 944.0 80 865.0 81 651.0 82 436.0 83 356.0 84 294.0 85 203.5 86 129.0 87 83.0 88 71.0 89 35.5 90 13.5 91 8.5 92 2.0 93 3.0 94 3.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 146890.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.460276397304103 #Duplication Level Percentage of deduplicated Percentage of total 1 46.05513719380247 14.489073456327864 2 24.46767073487406 15.395193682347335 3 13.671773565307713 12.903533256178093 4 6.753657058772614 8.498876710463612 5 3.3000086557604087 5.1909592211859215 6 1.7138405608932743 3.2350738647967865 7 1.0213797282091233 2.249302198924365 8 0.7097723535012551 1.7863707536251616 9 0.5258374448195274 1.488869221866703 >10 1.7268242015061022 8.001906188304172 >50 0.01514758071496581 0.3240520117094424 >100 0.025967281225655673 1.924569405677718 >500 0.004327880204275946 0.9585404043842332 >1k 0.006491820306413918 4.2296956906528695 >5k 0.0 0.0 >10k+ 0.002163940102137973 19.323983933555724 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT 28385 19.323983933555724 No Hit TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 3263 2.221390155898972 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 1924 1.309823677581864 No Hit ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 1026 0.6984818571720335 RNA PCR Primer, Index 15 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 722 0.49152426986180137 No Hit CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 686 0.4670161345224318 No Hit CTTTACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 438 0.2981823132956634 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT 409 0.27843964871672683 No Hit CTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 299 0.2035536796242086 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 286 0.19470351964054736 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTATCTCGTATGCCGTC 252 0.17155694737558716 No Hit TTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 238 0.1620260058547212 No Hit TATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCT 230 0.15657975355708353 No Hit CTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 185 0.12594458438287154 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0020423446116141332 0.0 3 0.0 0.0 0.0 0.003403907686023555 0.0 4 0.0 0.0 0.0 0.005446252297637688 0.0 5 0.0 0.0 0.0 0.005446252297637688 0.0 6 0.0 0.0 0.0 0.006127033834842399 0.0 7 0.0 0.0 0.0 0.006127033834842399 0.0 8 0.0 0.0 0.0 0.006127033834842399 0.0 9 0.0 0.0 0.0 0.012934849206889509 0.0 10 0.0 0.0 0.0 0.019061883041731908 0.0 11 0.0 0.0 0.0 0.019061883041731908 0.0 12 0.0 0.0 0.0 0.02042344611614133 0.0 13 0.0 0.0 0.0 0.023827353802164886 0.0 14 0.0 0.0 0.0 0.029273606099802573 0.0 15 0.0 0.0 0.0 0.031996732248621415 0.0 16 0.0 0.0 0.0 0.031996732248621415 0.0 17 0.0 0.0 0.0 0.03471985839744026 0.0 18 0.0 0.0 0.0 0.037442984546259106 0.0 19 0.0 0.0 0.0 0.052420178364762746 0.0 20 0.0 0.0 0.0 0.05650486758799101 0.0 21 0.0 0.0 0.0 0.06127033834842399 0.0 22 0.0 0.0 0.0 0.07012049833208524 0.0 23 0.0 0.0 0.0 0.07692831370413235 0.0 24 0.0 0.0 0.0 0.08305534753897474 0.0 25 0.0 0.0 0.0 0.08986316291102185 0.0 26 0.0 0.0 0.0 0.09599019674586426 0.0 27 0.0 0.0 0.0 0.13819865205255633 0.0 28 0.0 0.0 0.0 0.1851725781196814 0.0 29 0.0 0.0 0.0 0.24303900878208182 0.0 30 0.0 0.0 0.0 0.2981823132956634 0.0 31 0.0 0.0 0.0 0.34447545782558375 0.0 32 0.0 0.0 0.0 0.4350194022738103 0.0 33 0.0 0.0 0.0 0.5596024235822724 0.0 34 0.0 0.0 0.0 0.7318401524950643 0.0 35 0.0 0.0 0.0 0.9701136905167131 0.0 36 0.0 0.0 0.0 1.3738171420791068 0.0 37 0.0 0.0 0.0 1.9306964395125603 0.0 38 0.0 0.0 0.0 2.5760773367826264 0.0 39 0.0 0.0 0.0 3.158826332629859 0.0 40 0.0 0.0 0.0 3.8484580298182314 0.0 41 0.0 0.0 0.0 4.540812853155423 0.0 42 0.0 0.0 0.0 5.228402205732181 0.0 43 0.0 0.0 0.0 5.997685342773504 0.0 44 0.0 0.0 0.0 6.718632990673293 0.0 45 0.0 0.0 0.0 7.528763019946899 0.0 46 0.0 0.0 0.0 8.272857240111648 0.0 47 0.0 0.0 0.0 9.025801620260058 0.0 48 0.0 0.0 0.0 9.682755803662605 0.0 49 0.0 0.0 0.0 10.383280005446252 0.0 50 0.0 0.0 0.0 10.986452447409626 0.0 51 0.0 0.0 0.0 11.657703043093472 0.0 52 0.0 0.0 0.0 12.309891755735585 0.0 53 0.0 0.0 0.0 12.860644019334195 0.0 54 0.0 0.0 0.0 13.487643815099734 0.0 55 0.0 0.0 0.0 14.000272312614882 0.0 56 0.0 0.0 0.0 14.503369868609163 0.0 57 0.0 0.0 0.0 15.033017904554429 0.0 58 0.0 0.0 0.0 15.57355844509497 0.0 59 0.0 0.0 0.0 16.10116413642862 0.0 60 0.0 0.0 0.0 16.579072775546326 0.0 61 0.0 0.0 0.0 17.08829736537545 0.0 62 0.0 0.0 0.0 17.571652256790795 0.0 63 0.0 0.0 0.0 18.101981074273265 0.0 64 0.0 0.0 0.0 18.555381578051602 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTAT 25 2.3841517E-4 56.000004 39 CTATACA 125 0.0 56.0 1 TCTTTAT 115 0.0 54.782608 1 TCGTTGT 20 0.0069400296 52.5 34 TGCCCAT 20 0.0069400296 52.5 12 GGTAAGC 20 0.0069400296 52.5 16 GTCTACT 20 0.0069400296 52.5 27 TATAACT 20 0.0069400296 52.5 4 GCCAAGA 20 0.0069400296 52.5 1 ATATTAG 20 0.0069400296 52.5 58 TCTCGTA 4050 0.0 50.728394 38 AATCTCG 4015 0.0 50.5604 36 ATCTCGT 4065 0.0 50.541206 37 TAATCTC 4020 0.0 50.49751 35 TATGCCG 4230 0.0 50.472816 43 CGTCTTC 4210 0.0 50.46318 48 TCGTATG 4215 0.0 50.40332 40 CTCGTAT 4170 0.0 50.35971 39 CGTATGC 4230 0.0 50.30733 41 CTGCTTG 4190 0.0 50.286396 54 >>END_MODULE