##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779748_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 35006 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.60469633777067 34.0 34.0 34.0 34.0 34.0 2 33.6126092669828 34.0 34.0 34.0 34.0 34.0 3 33.61632291607153 34.0 34.0 34.0 34.0 34.0 4 33.65037422156202 34.0 34.0 34.0 34.0 34.0 5 33.699794320973545 34.0 34.0 34.0 34.0 34.0 6 37.37862080786151 38.0 38.0 38.0 37.0 38.0 7 37.3360566759984 38.0 38.0 38.0 37.0 38.0 8 37.22904644918014 38.0 38.0 38.0 36.0 38.0 9 37.25961263783351 38.0 38.0 38.0 36.0 38.0 10-11 37.14461806547449 38.0 38.0 38.0 36.0 38.0 12-13 37.1362337884934 38.0 38.0 38.0 36.0 38.0 14-15 37.13846197794663 38.0 38.0 38.0 36.0 38.0 16-17 36.90051705421928 38.0 37.5 38.0 34.5 38.0 18-19 36.83311432325887 38.0 37.5 38.0 34.0 38.0 20-21 36.994229560646744 38.0 38.0 38.0 34.5 38.0 22-23 36.98927326743987 38.0 37.5 38.0 35.0 38.0 24-25 36.82805804719191 38.0 37.5 38.0 34.5 38.0 26-27 36.68038336285208 38.0 37.0 38.0 34.0 38.0 28-29 36.768225447066214 38.0 37.0 38.0 34.0 38.0 30-31 36.524195852139634 38.0 37.0 38.0 34.5 38.0 32-33 36.38287722104782 38.0 37.0 38.0 34.0 38.0 34-35 35.97299034451237 38.0 37.0 38.0 32.5 38.0 36-37 35.952193909615495 38.0 37.0 38.0 32.0 38.0 38-39 33.16527166771411 37.0 33.0 38.0 22.5 38.0 40-41 35.52502428155174 37.5 36.0 38.0 30.5 38.0 42-43 36.59856881677427 38.0 37.0 38.0 34.0 38.0 44-45 36.6700137119351 38.0 37.0 38.0 34.0 38.0 46-47 36.66338627663829 38.0 37.0 38.0 34.0 38.0 48-49 36.57852939496087 38.0 37.0 38.0 34.0 38.0 50-51 36.31420327943781 38.0 37.0 38.0 33.5 38.0 52-53 36.34935439638919 38.0 37.0 38.0 34.0 38.0 54-55 36.36285208250014 38.0 37.0 38.0 34.0 38.0 56-57 36.31390333085757 38.0 37.0 38.0 34.0 38.0 58-59 36.0444352396732 38.0 37.0 38.0 32.5 38.0 60-61 36.05030566188653 38.0 37.0 38.0 33.0 38.0 62-63 36.27165343084043 38.0 37.0 38.0 34.0 38.0 64-65 36.39781751699709 38.0 37.0 38.0 34.0 38.0 66-67 36.1387190767297 38.0 37.0 38.0 32.5 38.0 68-69 35.291278637947784 38.0 36.0 38.0 28.0 38.0 70-71 30.625349940010288 34.5 27.5 38.0 16.5 38.0 72-73 23.022553276581156 22.5 11.0 35.5 10.0 38.0 74-75 22.018653945037993 21.5 11.0 34.0 10.5 38.0 76 22.141832828657943 22.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 2.0 23 15.0 24 16.0 25 36.0 26 82.0 27 128.0 28 299.0 29 453.0 30 686.0 31 1080.0 32 1622.0 33 2601.0 34 4535.0 35 10730.0 36 7558.0 37 5162.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 11.866537165057418 6.898817345597898 13.317716962806376 67.91692852653831 2 6.610295377935212 4.536365194538079 70.65074558647089 18.20259384105582 3 6.781694566645719 9.73833057190196 70.41078672227619 13.069188139176141 4 5.593326858252871 56.695994972290464 23.81877392447009 13.891904244986575 5 6.08467119922299 22.68468262583557 64.52608124321544 6.70456493172599 6 10.335371079243558 65.07455864708908 11.817974061589442 12.77209621207793 7 9.306975946980518 20.927840941552876 10.312517854082158 59.45266525738445 8 8.087185053990744 65.7715820145118 7.153059475518482 18.988173455978973 9 6.990230246243501 15.780151973947323 4.076444038164886 73.1531737416443 10-11 8.962749242986916 38.130606181797404 33.98274581500314 18.923898760212534 12-13 9.789750328515112 7.195909272696109 39.97457578700794 43.03976461178084 14-15 11.480888990458778 5.890418785351083 11.669428098040335 70.9592641261498 16-17 40.84442666971376 32.24875735588185 4.1235788150602755 22.783237159344115 18-19 41.985659601211225 13.69479517796949 3.9064731760269664 40.41307204479232 20-21 13.106324630063417 6.667428440838713 4.0750157115922985 76.15123121750557 22-23 12.037936353767925 36.756556018968176 3.912186482317317 47.29332114494658 24-25 40.99440095983546 37.38930469062446 3.8293435411072387 17.786950808432838 26-27 41.884248414557504 39.948865908701364 7.58155744729475 10.58532822944638 28-29 13.463406273210307 12.122207621550592 34.22556133234303 40.188824772896076 30-31 35.913843341141515 5.8875621322059075 44.31954522081929 13.879049305833286 32-33 17.328457978632233 8.645660743872478 35.513911900817 38.51196937667829 34-35 10.502485288236302 64.16899960006856 13.733359995429357 11.595155116265783 36-37 38.389133291435755 43.33828486545164 8.215734445523625 10.056847397588985 38-39 12.839227560989544 12.51499742901217 35.913843341141515 38.73193166885677 40-41 10.108267154202137 5.653316574301549 40.4387819230989 43.79963434839741 42-43 39.580357652973774 5.953265154544935 38.163457692966915 16.302919499514367 44-45 12.679254984859739 34.37696394903731 41.10295377935211 11.840827286750843 46-47 39.56178940753014 7.5986973661658 14.780323373136033 38.05918985316803 48-49 38.48483117179912 4.264983145746443 9.038450551334057 48.21173513112038 50-51 14.5546477746672 4.404959149860024 39.54607781523167 41.4943152602411 52-53 8.447123350282808 4.463520539336114 68.97246186368051 18.116894246700564 54-55 8.8727646689139 4.207850082842941 46.01925384219848 40.90013140604468 56-57 38.61480888990459 4.399245843569674 17.141347197623265 39.84459806890248 58-59 12.612123635948121 7.968633948465978 63.25344226703994 16.165800148545966 60-61 37.43072616122951 38.18773924470091 15.737302176769695 8.644232417299891 62-63 10.021139233274296 76.5154544935154 4.712049362966349 8.751356910243958 64-65 6.566017254184997 80.1762554990573 4.480660458207165 8.777066788550535 66-67 6.877392447009084 80.27766668571103 4.29640633034337 8.548534536936526 68-69 6.864537507855796 79.28783637090785 4.809175569902303 9.038450551334057 70-71 7.575844141004399 72.50471347768953 7.181626006970234 12.737816374335829 72-73 9.984002742387018 55.51905387647832 13.083471404902017 21.413471976232646 74-75 11.188082043078328 48.088899045877845 16.000114266125806 24.722904644918014 76 10.752442438439125 50.05141975661315 15.514483231446038 23.681654573501685 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.5 20 3.5 21 6.0 22 4.5 23 4.0 24 6.5 25 8.0 26 8.5 27 11.5 28 13.5 29 13.0 30 15.5 31 23.5 32 32.5 33 36.0 34 33.5 35 44.0 36 69.0 37 81.0 38 244.5 39 3616.0 40 7336.5 41 6931.0 42 6013.0 43 4735.5 44 2534.5 45 1157.0 46 703.0 47 490.5 48 206.0 49 133.0 50 132.0 51 120.0 52 107.5 53 110.0 54 113.0 55 143.5 56 209.5 57 238.5 58 232.0 59 252.5 60 306.0 61 368.5 62 398.0 63 378.5 64 373.5 65 383.0 66 401.5 67 425.0 68 477.0 69 490.0 70 449.0 71 447.0 72 419.5 73 408.0 74 376.5 75 329.0 76 328.0 77 283.5 78 208.5 79 177.0 80 171.5 81 137.5 82 97.5 83 86.0 84 57.5 85 25.5 86 17.5 87 13.0 88 7.0 89 1.5 90 1.5 91 0.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 35006.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.990858709935438 #Duplication Level Percentage of deduplicated Percentage of total 1 71.87767933695342 14.368965320230817 2 18.705344384109747 7.478717934068444 3 5.587310660188625 3.350854139290407 4 1.557587882252072 1.2455007712963493 5 0.685910260074307 0.6855967548420271 6 0.2857959416976279 0.34279837742101354 7 0.17147756501857675 0.23995886419470946 8 0.15718776793369535 0.2513854767754099 9 0.08573878250928837 0.1542592698394561 >10 0.6001714775650185 2.539564646060675 >50 0.05715918833952558 0.8455693309718335 >100 0.14289797084881395 6.253213734788322 >500 0.02857959416976279 3.328000914129006 >1k 0.04286939125464419 11.957950065703022 >5k 0.0 0.0 >10k+ 0.014289797084881395 46.9576644003885 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 16438 46.9576644003885 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 2040 5.82757241615723 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 1130 3.228018054047878 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT 1016 2.9023595954979147 Illumina PCR Primer Index 9 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 623 1.7796949094440955 No Hit CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 542 1.548306004684911 No Hit CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 421 1.2026509741187226 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT 397 1.1340912986345197 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 211 0.6027538136319488 No Hit TTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 199 0.5684739758898475 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 190 0.5427640975832714 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 189 0.5399074444380964 No Hit TATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCT 164 0.4684911158087185 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCG 145 0.4142147060503914 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCGT 142 0.405644746614866 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAGCTCGTATGCCGT 131 0.3742215620179398 No Hit CCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 82 0.23424555790435925 No Hit TCTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 80 0.228532251614009 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATATCGTATGCCGT 74 0.21139233274295838 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCTAAGATCTCGTATGCCGT 60 0.17139918871050677 No Hit CTTATATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 48 0.1371193509684054 No Hit CTCTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 48 0.1371193509684054 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCC 38 0.1085528195166543 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGAACTCGTATGCCG 37 0.10569616637147919 No Hit CTTATTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 37 0.10569616637147919 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGTCTT 36 0.10283951322630407 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005713306290350226 0.0 2 0.0 0.0 0.0 0.005713306290350226 0.0 3 0.0 0.0 0.0 0.005713306290350226 0.0 4 0.0 0.0 0.0 0.014283265725875564 0.0 5 0.0 0.0 0.0 0.017139918871050677 0.0 6 0.0 0.0 0.0 0.017139918871050677 0.0 7 0.0 0.0 0.0 0.017139918871050677 0.0 8 0.0 0.0 0.0 0.017139918871050677 0.0 9 0.0 0.0 0.0 0.017139918871050677 0.0 10 0.0 0.0 0.0 0.017139918871050677 0.0 11 0.0 0.0 0.0 0.017139918871050677 0.0 12 0.0 0.0 0.0 0.017139918871050677 0.0 13 0.0 0.0 0.0 0.02856653145175113 0.0 14 0.0 0.0 0.0 0.02856653145175113 0.0 15 0.0 0.0 0.0 0.02856653145175113 0.0 16 0.0 0.0 0.0 0.02856653145175113 0.0 17 0.0 0.0 0.0 0.02856653145175113 0.0 18 0.0 0.0 0.0 0.02856653145175113 0.0 19 0.0 0.0 0.0 0.02856653145175113 0.0 20 0.0 0.0 0.0 0.02856653145175113 0.0 21 0.0 0.0 0.0 0.03427983774210135 0.0 22 0.0 0.0 0.0 0.03427983774210135 0.0 23 0.0 0.0 0.0 0.04284979717762669 0.0 24 0.0 0.0 0.0 0.04284979717762669 0.0 25 0.0 0.0 0.0 0.06284636919385249 0.0 26 0.0 0.0 0.0 0.0657030223390276 0.0 27 0.0 0.0 0.0 0.0885562475004285 0.0 28 0.0 0.0 0.0 0.1314060446780552 0.0 29 0.0 0.0 0.0 0.1599725761298063 0.0 30 0.0 0.0 0.0 0.21424898588813346 0.0 31 0.0 0.0 0.0 0.25424212992058504 0.0 32 0.0 0.0 0.0 0.3085185396789122 0.0 33 0.0 0.0 0.0 0.37993486830829 0.0 34 0.0 0.0 0.0 0.5399074444380964 0.0 35 0.0 0.0 0.0 0.6884534079872022 0.0 36 0.0 0.0 0.0 0.8969890875849854 0.0 37 0.0 0.0 0.0 1.2226475461349482 0.0 38 0.0 0.0 0.0 1.5740158829914872 0.0 39 0.0 0.0 0.0 1.8825344226703993 0.0 40 0.0 0.0 0.0 2.1339198994458095 0.0 41 0.0 0.0 0.0 2.39673198880192 0.0 42 0.0 0.0 0.0 2.6452608124321544 0.0 43 0.0 0.0 0.0 2.842369879449237 0.0 44 0.0 0.0 0.0 3.1023253156601727 0.0 45 0.0 0.0 0.0 3.3794206707421584 0.0 46 0.0 0.0 0.0 3.5793863909044163 0.0 47 0.0 0.0 0.0 3.7622121921956238 0.0 48 0.0 0.0 0.0 3.9907444438096324 0.0 49 0.0 0.0 0.0 4.150717019939439 0.0 50 0.0 0.0 0.0 4.356396046392047 0.0 51 0.0 0.0 0.0 4.55921841969948 0.0 52 0.0 0.0 0.0 4.722047648974462 0.0 53 0.0 0.0 0.0 4.9305833285722445 0.0 54 0.0 0.0 0.0 5.073415985831001 0.0 55 0.0 0.0 0.0 5.213391989944581 0.0 56 0.0 0.0 0.0 5.396217791235788 0.0 57 0.0 0.0 0.0 5.55904702051077 0.0 58 0.0 0.0 0.0 5.7304462092212765 0.0 59 0.0 0.0 0.0 5.853282294463806 0.0 60 0.0 0.0 0.0 5.996114951722562 0.0 61 0.0 0.0 0.0 6.181797406158944 0.0 62 0.0 0.0 0.0 6.316060103982174 0.0 63 0.0 0.0 0.0 6.45889276124093 0.0 64 0.0 0.0 0.0 6.573158887047935 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAGCGGG 15 0.0022068764 70.0 70 TTTCTAA 15 0.0022068764 70.0 29 ACTTTCT 15 0.0022068764 70.0 27 TCTAAGA 15 0.0022068764 70.0 31 TTCTAAG 15 0.0022068764 70.0 30 CAGATCT 15 0.0022068764 70.0 34 TCTTTAT 75 0.0 70.0 1 GACTTTC 15 0.0022068764 70.0 26 TCTTAAT 15 0.0022068764 70.0 1 CTTTCTA 15 0.0022068764 70.0 28 TTTACAC 35 2.8928298E-7 60.0 2 AAACCAC 25 2.3590405E-4 55.999996 69 TCTGCTC 25 2.3590405E-4 55.999996 53 CTGCTCG 25 2.3590405E-4 55.999996 54 TTTATAC 100 0.0 55.999996 3 CTTTATA 95 0.0 55.263157 2 CTTATAC 2360 0.0 53.09322 1 AAACTCA 20 0.0068961354 52.500004 69 AAATCTC 20 0.0068961354 52.500004 68 CTTTACA 40 7.276103E-7 52.500004 1 >>END_MODULE