##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779747_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 77962 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.13650239860445 32.0 21.0 34.0 12.0 34.0 2 25.512198250429698 27.0 21.0 34.0 12.0 34.0 3 24.948167055745106 27.0 21.0 34.0 11.0 34.0 4 25.79614427541623 31.0 21.0 34.0 12.0 34.0 5 25.687360508965906 31.0 21.0 34.0 11.0 34.0 6 27.40333752340884 31.0 21.0 37.0 11.0 38.0 7 28.353916010364024 34.0 21.0 37.0 12.0 38.0 8 27.559926630922757 33.0 21.0 37.0 11.0 38.0 9 29.094571714424976 34.0 21.0 38.0 12.0 38.0 10-11 28.45269490264488 34.0 21.0 38.0 11.0 38.0 12-13 28.20133526589877 32.5 21.0 37.5 11.0 38.0 14-15 27.567648341499705 32.5 16.0 37.0 11.0 38.0 16-17 27.53758882532516 31.0 16.0 37.5 11.0 38.0 18-19 28.006317180164693 33.0 21.0 37.0 11.0 38.0 20-21 27.057200944049665 30.5 16.0 37.0 11.0 38.0 22-23 27.09773992457864 30.5 16.0 37.5 11.0 38.0 24-25 27.667190426105023 32.5 21.0 37.0 11.0 38.0 26-27 26.50954311074626 29.0 11.0 37.0 11.0 38.0 28-29 27.956959800928658 34.0 21.0 37.5 11.0 38.0 30-31 28.430190349144453 34.0 21.0 38.0 11.0 38.0 32-33 28.57193247992612 34.0 21.0 38.0 11.0 38.0 34-35 28.61697365383135 34.0 21.0 38.0 11.0 38.0 36-37 27.197160154947284 30.5 16.0 37.0 11.0 38.0 38-39 26.261422231343474 27.0 16.0 36.5 11.0 38.0 40-41 26.542129498986686 29.0 11.0 37.0 11.0 38.0 42-43 27.353120751135165 32.5 16.0 37.0 11.0 38.0 44-45 28.734248736563966 34.0 21.0 38.0 11.0 38.0 46-47 27.703919858392553 30.5 16.0 37.5 11.0 38.0 48-49 26.95930709832996 30.5 16.0 37.0 11.0 38.0 50-51 25.412771606680177 26.5 11.0 36.5 11.0 38.0 52-53 27.618128062389367 32.5 21.0 37.0 11.0 38.0 54-55 27.032631281906568 30.5 16.0 37.0 11.0 38.0 56-57 27.416664528873042 32.0 16.0 37.5 11.0 38.0 58-59 28.175399553628694 34.0 21.0 38.0 11.0 38.0 60-61 28.73687822272389 34.0 21.0 38.0 11.0 38.0 62-63 28.688662425284114 34.0 21.0 38.0 11.0 38.0 64-65 28.477418485929043 34.0 20.5 38.0 11.0 38.0 66-67 27.089646237910777 31.0 18.0 37.5 11.0 38.0 68-69 26.97024832610759 31.0 11.0 37.0 11.0 38.0 70-71 26.697634745132245 29.0 11.0 37.0 11.0 38.0 72-73 25.87804314922655 27.0 11.0 36.5 11.0 38.0 74-75 26.802608963341115 30.5 15.0 37.0 11.0 38.0 76 26.881916831276776 31.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 1.0 4 0.0 5 0.0 6 0.0 7 1.0 8 0.0 9 0.0 10 0.0 11 8.0 12 50.0 13 295.0 14 849.0 15 1424.0 16 2497.0 17 3942.0 18 4993.0 19 5097.0 20 4330.0 21 3420.0 22 2546.0 23 1979.0 24 1693.0 25 1485.0 26 1570.0 27 1633.0 28 1908.0 29 2126.0 30 2436.0 31 2973.0 32 3514.0 33 4456.0 34 5694.0 35 6823.0 36 6887.0 37 3332.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.2597932326005 15.660193427567275 12.38295579897899 38.69705754085324 2 17.275082732613324 13.35650701623868 43.446807418999 25.92160283214899 3 19.490264487827403 12.363715656345398 41.39324286190708 26.752776993920115 4 16.608091121315514 19.31838588030066 25.340550524614557 38.73297247376927 5 15.310022831635925 21.833713860598753 39.107513917036506 23.748749390728815 6 27.29919704471409 32.023293399348404 13.955516790231137 26.72199276570637 7 26.038326364126114 21.42069213206434 16.419537723506323 36.121443780303224 8 21.476122676722976 31.661984838573133 16.966175395390003 29.89571708931389 9 21.337865572088248 14.18419702411493 16.50590046177527 47.97203694202155 10-11 24.34469179509874 20.656238174949813 25.84162289393852 29.15744713601293 12-13 22.68613831540736 14.67813415940328 30.240701902911127 32.39502562227823 14-15 25.56534677595208 19.278228858018753 21.508189992432115 33.64823437359705 16-17 29.433156314938813 16.591626260294003 22.34023448523564 31.634982939531543 18-19 23.1836839404823 16.0287326834274 27.103001539250897 33.684581836839406 20-21 28.838321970741593 16.104309233522105 23.399028995452824 31.658339800283475 22-23 30.660595177013857 15.053232426885582 22.392252437147256 31.89391995895331 24-25 24.275425060448054 21.179586836754982 18.81297340285661 35.73201469994035 26-27 27.761031298101592 20.930605438686506 22.58786557208825 28.720497691123654 28-29 25.29598132399533 20.449968574030606 22.52151716884083 31.732532933133236 30-31 24.925922600341206 19.673161533626647 23.89653535832938 31.504380507702766 32-33 24.631221139045664 19.4465110312981 24.62480759363776 31.29746023601847 34-35 24.162877354557757 20.3500490633077 23.931349850244676 31.555723731889866 36-37 28.016188100078885 15.693606213562344 29.155897047788248 27.13430863857052 38-39 27.564312239047194 13.971356922504633 34.2010915924294 24.263239246018767 40-41 25.013628871401178 21.311065360860447 23.63983863416261 30.035467133575764 42-43 20.36800687527658 21.6186402088237 26.202371713880744 31.810981202018972 44-45 20.01564925152965 16.805628599648532 30.614810349029618 32.5639117997922 46-47 26.28206772703951 16.63160595177014 27.59427911749615 29.4920472036942 48-49 25.82126502392283 17.26035480188304 29.178799112353932 27.739581061840195 50-51 32.795874781136355 15.715211103201021 26.830597938673286 24.658316176989334 52-53 19.01371866161276 20.349027379600948 28.55457000109031 32.082683957695984 54-55 25.04056593487644 17.787440914833986 25.75119132370013 31.420801826589447 56-57 25.195613134941 18.421626475115442 24.760133401744486 31.622626988199077 58-59 20.116214188136148 20.780661753859377 27.165387156151592 31.937736901852887 60-61 19.890328373524884 18.613391482811696 26.949717804002056 34.546562339661364 62-63 20.000128271730837 20.442665743110204 26.427824703852643 33.12938128130632 64-65 20.226780056695016 21.40878131373379 25.360757301727787 33.00368132784341 66-67 18.611303522409504 28.325508607198746 19.12311757613074 33.94007029426101 68-69 19.19889148341074 27.89253547509687 19.25534371712299 33.653229324369406 70-71 18.455855000705498 30.2710399055914 18.640567477776777 32.632537615926324 72-73 16.921715260585692 31.699354789055782 18.517425826395925 32.8615041239626 74-75 18.960087738989333 25.954834944233152 24.631053701648955 30.454023615128563 76 20.24782257340397 23.327646583460538 26.53959132364448 29.884939519491017 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.5 16 4.0 17 5.0 18 4.0 19 5.5 20 14.5 21 21.0 22 24.0 23 38.0 24 56.5 25 64.0 26 81.0 27 134.0 28 192.0 29 214.0 30 270.5 31 404.5 32 555.5 33 629.0 34 704.0 35 910.0 36 1155.0 37 1269.0 38 1447.0 39 1774.5 40 2107.0 41 2386.5 42 2483.0 43 2617.0 44 2786.5 45 2938.0 46 3054.0 47 3093.5 48 3016.0 49 2881.5 50 2864.0 51 2870.5 52 2829.5 53 2701.5 54 2621.0 55 2636.0 56 2688.0 57 2658.0 58 2591.0 59 2607.5 60 2612.5 61 2561.5 62 2522.0 63 2465.0 64 2396.5 65 2374.0 66 2324.0 67 2285.0 68 2215.0 69 2065.5 70 1892.5 71 1799.0 72 1738.5 73 1559.0 74 1339.5 75 1239.0 76 1105.0 77 860.5 78 638.5 79 527.0 80 454.5 81 320.0 82 212.5 83 167.0 84 120.0 85 59.0 86 30.0 87 15.0 88 13.0 89 6.5 90 2.5 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.001282676175572715 9 0.00256535235114543 10-11 0.003206690438931787 12-13 0.003206690438931787 14-15 0.001282676175572715 16-17 0.00513070470229086 18-19 0.00256535235114543 20-21 0.0019240142633590725 22-23 0.00256535235114543 24-25 0.003206690438931787 26-27 0.00256535235114543 28-29 0.001282676175572715 30-31 0.003848028526718145 32-33 0.00256535235114543 34-35 0.0019240142633590725 36-37 0.004489366614504502 38-39 0.003206690438931787 40-41 0.003206690438931787 42-43 0.0019240142633590725 44-45 0.003848028526718145 46-47 0.00256535235114543 48-49 0.003848028526718145 50-51 0.003206690438931787 52-53 0.003206690438931787 54-55 0.003206690438931787 56-57 0.00256535235114543 58-59 0.003206690438931787 60-61 0.00256535235114543 62-63 0.003206690438931787 64-65 0.001282676175572715 66-67 0.00513070470229086 68-69 0.025653523511454297 70-71 0.003848028526718145 72-73 0.003848028526718145 74-75 0.004489366614504502 76 0.003848028526718145 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 77962.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 98.74169467176317 #Duplication Level Percentage of deduplicated Percentage of total 1 98.87764513321468 97.63346245606834 2 0.9911536612930464 1.957363843923963 3 0.11691196529013653 0.346322567404633 4 0.01039217469245658 0.04104563761832688 5 0.0012990218365570726 0.006413380877863574 6 0.002598043673114145 0.01539211410687258 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001282676175572715 0.0 2 0.0 0.0 0.0 0.00256535235114543 0.0 3 0.0 0.0 0.0 0.00256535235114543 0.0 4 0.0 0.0 0.0 0.011544085580154434 0.0 5 0.0 0.0 0.0 0.014109437931299864 0.0 6 0.0 0.0 0.0 0.015392114106872579 0.0 7 0.0 0.0 0.0 0.015392114106872579 0.0 8 0.0 0.0 0.0 0.015392114106872579 0.0 9 0.0 0.0 0.0 0.015392114106872579 0.0 10 0.0 0.0 0.0 0.016674790282445295 0.0 11 0.0 0.0 0.0 0.019240142633590723 0.0 12 0.0 0.0 0.0 0.02052281880916344 0.0 13 0.0 0.0 0.0 0.02052281880916344 0.0 14 0.0 0.0 0.0 0.021805494984736152 0.0 15 0.0 0.0 0.0 0.023088171160308868 0.0 16 0.0 0.0 0.0 0.023088171160308868 0.0 17 0.0 0.0 0.0 0.023088171160308868 0.0 18 0.0 0.0 0.0 0.026936199687027013 0.0 19 0.0 0.0 0.0 0.03334958056489059 0.0 20 0.0 0.0 0.0 0.035914932916036015 0.0 21 0.0 0.0 0.0 0.037197609091608734 0.0 22 0.0 0.0 0.0 0.046176342320617736 0.0 23 0.0 0.0 0.0 0.046176342320617736 0.0 24 0.0 0.0 0.0 0.0602857802519176 0.0 25 0.0 0.0 0.0 0.07311254200764475 0.0 26 0.0 0.0 0.0 0.07439521818321747 0.0 27 0.0 0.0 0.0 0.13468099843513506 0.0 28 0.0 0.0 0.0 0.21035889279392525 0.0 29 0.0 0.0 0.0 0.2770580539237064 0.0 30 0.0 0.0 0.0 0.32451707241989686 0.0 31 0.0 0.0 0.0 0.3591493291603602 0.0 32 0.0 0.0 0.0 0.4361098996947231 0.0 33 0.0 0.0 0.0 0.5040917370000769 0.0 34 0.0 0.0 0.0 0.5951617454657397 0.0 35 0.0 0.0 0.0 0.8170647238398194 0.0 36 0.0 0.0 0.0 0.999204740771145 0.0 37 0.0 0.001282676175572715 0.0 1.4827736589620584 0.0 38 0.0 0.001282676175572715 0.0 1.921448911007927 0.0 39 0.0 0.001282676175572715 0.0 2.411431210076704 0.0 40 0.0 0.001282676175572715 0.0 2.878325337985172 0.001282676175572715 41 0.0 0.001282676175572715 0.0 3.3939611605654036 0.001282676175572715 42 0.0 0.001282676175572715 0.0 3.86470331700059 0.001282676175572715 43 0.0 0.001282676175572715 0.0 4.323901387855622 0.001282676175572715 44 0.0 0.001282676175572715 0.0 4.7933608681152355 0.001282676175572715 45 0.0 0.001282676175572715 0.0 5.125573997588568 0.001282676175572715 46 0.0 0.001282676175572715 0.0 5.49498473615351 0.001282676175572715 47 0.0 0.001282676175572715 0.0 5.86311279854288 0.001282676175572715 48 0.0 0.001282676175572715 0.0 6.14658423334445 0.001282676175572715 49 0.0 0.001282676175572715 0.0 6.421076934917011 0.001282676175572715 50 0.0 0.001282676175572715 0.0 6.766116826146071 0.001282676175572715 51 0.0 0.001282676175572715 0.0 7.208640106718658 0.001282676175572715 52 0.0 0.001282676175572715 0.0 7.5485492932454274 0.001282676175572715 53 0.0 0.001282676175572715 0.0 7.934634822092814 0.001282676175572715 54 0.0 0.001282676175572715 0.0 8.257869218337138 0.001282676175572715 55 0.0 0.001282676175572715 0.0 8.502860367871527 0.001282676175572715 56 0.0 0.001282676175572715 0.0 8.776070393268515 0.001282676175572715 57 0.0 0.001282676175572715 0.0 9.018496190451758 0.001282676175572715 58 0.0 0.001282676175572715 0.0 9.249377902054848 0.001282676175572715 59 0.0 0.001282676175572715 0.0 9.51104384187168 0.001282676175572715 60 0.0 0.001282676175572715 0.0 9.688053154100716 0.001282676175572715 61 0.0 0.001282676175572715 0.0 9.85993176162746 0.001282676175572715 62 0.0 0.001282676175572715 0.0 9.957415150970986 0.001282676175572715 63 0.0 0.001282676175572715 0.0 10.11518432056643 0.001282676175572715 64 0.0 0.001282676175572715 0.0 10.270388137810729 0.001282676175572715 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTAGCTT 15 0.002218239 69.99103 38 GTCGTAT 15 0.002218239 69.99103 54 CAGTCGA 15 0.002218239 69.99103 18 GTTGGTC 30 1.01270416E-7 69.99103 47 CGTTGGT 20 7.887426E-5 69.99102 46 GATATCG 20 7.887426E-5 69.99102 41 CGTGTAT 20 7.887426E-5 69.99102 35 TATCGGT 20 7.887426E-5 69.99102 43 CCGTCTC 60 1.8189894E-12 58.325855 55 ATATCGG 30 8.313662E-6 58.325855 42 GTAGATA 30 8.313662E-6 58.325855 38 ATCGGTG 30 8.313662E-6 58.325855 44 CGACTAG 30 8.313662E-6 58.325855 22 TGTCGTA 30 8.313662E-6 58.325855 53 ATGTATA 25 2.3786958E-4 55.992813 28 CCGACTA 50 9.640644E-10 55.992813 21 TTCGATC 25 2.3786958E-4 55.992813 38 TATGTAT 25 2.3786958E-4 55.992813 27 AGTGTAC 25 2.3786958E-4 55.992813 35 TGTGTAG 45 2.6628186E-8 54.43746 35 >>END_MODULE