##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779746_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 216706 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.97266342417838 34.0 23.0 34.0 12.0 34.0 2 27.57737672237963 34.0 23.0 34.0 12.0 34.0 3 26.541064852842098 32.0 21.0 34.0 11.0 34.0 4 28.689279484647404 33.0 23.0 34.0 12.0 34.0 5 28.330013935931632 34.0 23.0 34.0 11.0 34.0 6 30.596097939143355 36.0 26.0 38.0 11.0 38.0 7 31.55519920998957 37.0 27.0 38.0 12.0 38.0 8 30.763033787712384 36.0 26.0 38.0 11.0 38.0 9 32.19638588686977 37.0 31.0 38.0 12.0 38.0 10-11 31.87272156746929 37.0 28.0 38.0 11.0 38.0 12-13 31.028414072522217 36.0 27.0 38.0 11.0 38.0 14-15 30.91966996760588 36.5 26.5 38.0 11.0 38.0 16-17 30.635086245881517 35.5 26.5 38.0 11.0 38.0 18-19 31.199694516995375 36.5 26.5 38.0 11.5 38.0 20-21 30.09013133000471 35.0 24.0 38.0 11.0 38.0 22-23 30.09552112078115 35.5 24.5 38.0 11.0 38.0 24-25 31.21325667032754 36.5 27.0 38.0 11.0 38.0 26-27 29.822679113637832 35.0 24.0 38.0 11.0 38.0 28-29 31.820076509187565 37.0 29.0 38.0 11.0 38.0 30-31 32.25838001716612 37.0 31.0 38.0 11.0 38.0 32-33 32.37366985685676 37.0 31.0 38.0 11.0 38.0 34-35 32.42867987042352 37.0 31.0 38.0 11.0 38.0 36-37 30.45162339759859 36.0 25.0 38.0 11.0 38.0 38-39 28.79602779803051 34.0 22.0 37.5 11.0 38.0 40-41 29.8775945289932 35.0 24.5 37.5 11.0 38.0 42-43 30.85537317840761 36.0 25.5 38.0 11.0 38.0 44-45 32.45982806198259 37.0 31.0 38.0 11.0 38.0 46-47 31.11925142820226 36.5 28.0 38.0 11.0 38.0 48-49 30.54344826631473 35.5 25.0 38.0 11.0 38.0 50-51 28.470937583638662 34.0 21.0 37.5 11.0 38.0 52-53 31.632654379666462 36.5 29.0 38.0 11.0 38.0 54-55 30.735918710141853 36.5 26.0 38.0 11.0 38.0 56-57 31.164026376750066 36.5 27.0 38.0 11.0 38.0 58-59 32.202098695929045 37.0 31.0 38.0 11.0 38.0 60-61 32.65092567810767 38.0 33.0 38.0 11.0 38.0 62-63 32.56144269194208 38.0 32.0 38.0 11.0 38.0 64-65 32.29610624532777 37.5 30.5 38.0 11.0 38.0 66-67 30.303900215037885 36.0 24.0 38.0 11.0 38.0 68-69 30.377135381576885 36.0 24.5 38.0 11.0 38.0 70-71 30.01078881064668 35.0 24.0 38.0 11.0 38.0 72-73 28.826737607634307 34.0 22.0 37.5 11.0 38.0 74-75 30.78488135999926 35.5 25.5 38.0 11.0 38.0 76 31.187456738622835 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 13.0 4 3.0 5 1.0 6 0.0 7 4.0 8 1.0 9 2.0 10 5.0 11 8.0 12 83.0 13 399.0 14 1141.0 15 2079.0 16 3259.0 17 5192.0 18 6656.0 19 7045.0 20 6140.0 21 4935.0 22 3960.0 23 3318.0 24 3248.0 25 3356.0 26 3728.0 27 4158.0 28 5084.0 29 6222.0 30 7737.0 31 9599.0 32 12212.0 33 16042.0 34 21604.0 35 28875.0 36 32554.0 37 18042.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.030271427648515 18.71337203399998 11.10029256227331 30.15606397607819 2 20.949678133868623 17.49475092868185 37.74163032694216 23.813940610507373 3 20.04531526875369 16.654053455404608 37.08284111045481 26.21779016538689 4 14.52508294839433 18.879008403283787 31.699899862021862 34.896008786300015 5 14.57135473867821 28.600500216883706 39.01322529140864 17.81491975302945 6 27.82492328280381 33.01815832583466 16.863939456865324 22.292978934496205 7 27.876016353954203 25.122516220132347 19.572600666340573 27.428866759572877 8 23.905097698974554 31.52903279399684 18.15807204895563 26.407797458072974 9 22.910070979592216 16.14254991185239 19.87059377336373 41.076785335191666 10-11 24.976232231862657 23.0348901606055 26.552750599963083 25.436127007568764 12-13 24.546165685579986 18.94347233150961 28.927019611734273 27.58334237117613 14-15 24.24083697147024 21.988037990456235 23.304458986736567 30.46666605133696 16-17 25.64538647036426 21.96887006888276 25.470468102781847 26.91527535797113 18-19 22.44997796284374 22.07061581737082 27.597673060903315 27.881733158882128 20-21 25.117798812089546 21.62560053165223 26.789826613070705 26.466774043187513 22-23 25.933925452107836 20.807229110275777 26.764183967564996 26.49466147005139 24-25 23.141443649134466 23.98251856364249 23.43887727459423 29.437160512628815 26-27 24.071189749340643 23.197354728100475 26.359959111812582 26.371496410746303 28-29 23.4699740409576 24.050995096625325 25.490395154312083 26.98863570810499 30-31 23.189335499338892 23.748681821013793 25.867459843133815 27.194522836513503 32-33 23.304566536677665 23.496088792486788 25.950573413018894 27.248771257816646 34-35 23.536999305448195 23.310173914849333 25.951086015972386 27.201740763730086 36-37 24.806679173964515 20.760268329998823 29.894057187427165 24.538995308609497 38-39 24.286205472213183 19.835561309140584 33.04488488599364 22.833348332652594 40-41 23.647519799147112 22.537567612472078 25.661586885488006 28.1533257028928 42-43 21.129240304496612 23.086685541949045 27.103105653124 28.68096850043035 44-45 20.79615284325467 21.492803887769725 29.674242371797977 28.036800897177628 46-47 23.24755518430149 20.379079115574363 29.78198566569597 26.591380034428173 48-49 23.00608046520751 21.289243230146184 30.300331137289287 25.404345167357018 50-51 25.453601467585063 19.876547483068546 31.142339598260126 23.527511451086266 52-53 19.296367148108576 22.984832156842835 29.70455819878113 28.01424249626746 54-55 21.69455386255547 22.141533576553062 28.62770074281244 27.536211818079025 56-57 21.82851103793765 22.38738811497823 27.972236131333805 27.811864715750318 58-59 19.40972863208418 23.433634853239802 28.83330256599594 28.32333394868008 60-61 19.657646306821462 22.651971948965393 28.696236093900353 28.99414565031279 62-63 19.57882203084762 23.346394188611672 28.01553457203777 29.05924920850294 64-65 20.217231281858396 23.656380447800114 26.993075089474644 29.13331318086685 66-67 19.232207058562903 25.18195621974127 23.0234039312697 32.56243279042613 68-69 19.545212195071286 25.256602893894385 23.271868659940868 31.92631625109346 70-71 19.271995550930082 25.973522495725156 22.675718647095067 32.0787633062497 72-73 18.86389281816147 26.384712834914403 21.905957443862683 32.84543690306145 74-75 19.770814632604225 26.49638523078911 25.348381603328402 28.38441853327826 76 20.379087863096395 25.68004135168314 26.547688274767168 27.3931825104533 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 2.0 3 3.0 4 2.0 5 4.0 6 4.0 7 1.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 2.0 14 3.5 15 4.5 16 6.5 17 9.0 18 14.0 19 29.0 20 43.5 21 48.0 22 69.5 23 125.0 24 195.5 25 232.0 26 311.0 27 494.0 28 724.5 29 851.0 30 1066.0 31 1497.0 32 2017.0 33 2321.0 34 2790.0 35 3740.5 36 4727.0 37 5232.0 38 5938.0 39 7343.5 40 8668.5 41 9977.5 42 10661.0 43 11002.0 44 11749.5 45 12456.0 46 12756.0 47 12611.5 48 12106.0 49 11343.0 50 10941.0 51 10361.5 52 9129.0 53 7932.0 54 7388.0 55 7011.0 56 6175.5 57 5510.0 58 5303.0 59 5117.0 60 4692.0 61 4201.0 62 3949.0 63 3939.5 64 3759.0 65 3455.0 66 3209.5 67 3097.0 68 3017.5 69 2874.5 70 2694.0 71 2577.0 72 2481.5 73 2218.0 74 1931.0 75 1812.0 76 1639.5 77 1293.5 78 969.0 79 818.0 80 708.0 81 514.0 82 358.5 83 287.0 84 206.0 85 108.5 86 64.5 87 37.0 88 31.0 89 15.0 90 4.5 91 2.5 92 1.0 93 2.0 94 2.5 95 1.5 96 1.0 97 1.0 98 1.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.6145468976401205E-4 3 9.229093795280241E-4 4 0.00230727344882006 5 0.0 6 4.6145468976401205E-4 7 0.0 8 0.00922909379528024 9 0.01107491255433629 10-11 0.011997821933864315 12-13 0.011305639899218296 14-15 0.00922909379528024 16-17 0.015458732107094404 18-19 0.012228549278746321 20-21 0.010613457864572278 22-23 0.012228549278746321 24-25 0.00876763910551623 26-27 0.008075457070870212 28-29 0.008536911760634223 30-31 0.011305639899218296 32-33 0.009690548485044253 34-35 0.008998366450398235 36-37 0.014997277417330392 38-39 0.013612913348038356 40-41 0.013843640692920363 42-43 0.009459821140162248 44-45 0.012228549278746321 46-47 0.010613457864572278 48-49 0.013151458658274346 50-51 0.010844185209454283 52-53 0.014074368037802367 54-55 0.013612913348038356 56-57 0.00992127582992626 58-59 0.011997821933864315 60-61 0.013612913348038356 62-63 0.012920731313392338 64-65 0.011305639899218296 66-67 0.015228004762212399 68-69 0.035762738456710935 70-71 0.01453582272756638 72-73 0.012690003968510331 74-75 0.011767094588982308 76 0.012920731313392338 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 216706.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 94.88444441903884 #Duplication Level Percentage of deduplicated Percentage of total 1 96.67801519801715 91.73239759599251 2 2.311355755620649 4.386234134536259 3 0.5604941446921212 1.5954652655770885 4 0.21184500150804794 0.804031810841663 5 0.09660053270454262 0.4582943938126859 6 0.05375964064304947 0.30605721807497577 7 0.03563358541675759 0.23667510684491863 8 0.019419824892351317 0.14741114365006203 9 0.013555272298235941 0.11575660328702146 >10 0.019321044207116982 0.21767672738282903 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0023072734488200604 0.0 2 0.0 0.0 0.0 0.0032301828283480844 0.0 3 0.0 0.0 0.0 0.0032301828283480844 0.0 4 0.0 0.0 0.0 0.005998910966932157 0.0 5 0.0 0.0 0.0 0.006921820346460181 0.0 6 0.0 0.0 0.0 0.006921820346460181 0.0 7 0.0 0.0 0.0 0.007383275036224193 0.0 8 0.0 0.0 0.0 0.007844729725988205 0.0 9 0.0 0.0 0.0 0.00876763910551623 0.0 10 0.0 0.0 0.0 0.009229093795280242 0.0 11 0.0 0.0 0.0 0.010152003174808265 0.0 12 0.0 0.0 0.0 0.010152003174808265 0.0 13 0.0 0.0 0.0 0.011536367244100301 0.0 14 0.0 0.0 0.0 0.013843640692920363 0.0 15 0.0 0.0 0.0 0.014766550072448386 0.0 16 0.0 0.0 0.0 0.014766550072448386 4.6145468976401205E-4 17 0.0 0.0 0.0 0.017073823521268447 4.6145468976401205E-4 18 0.0 0.0 0.0 0.018458187590560483 4.6145468976401205E-4 19 0.0 0.0 0.0 0.020765461039380543 4.6145468976401205E-4 20 0.0 0.0 0.0 0.024918553247256652 4.6145468976401205E-4 21 0.0 0.0 0.0 0.025380007937020665 4.6145468976401205E-4 22 0.0 0.0 0.0 0.03137891890395282 4.6145468976401205E-4 23 0.0 0.0 0.0 0.03645492049135696 4.6145468976401205E-4 24 0.0 0.0 0.0 0.03922364862994102 4.6145468976401205E-4 25 0.0 0.0 0.0 0.045684014286637195 4.6145468976401205E-4 26 0.0 0.0 0.0 0.05122147056380534 4.6145468976401205E-4 27 0.0 0.0 0.0 0.09229093795280241 4.6145468976401205E-4 28 0.0 0.0 0.0 0.15089568355283195 4.6145468976401205E-4 29 0.0 0.0 0.0 0.18827351342371693 4.6145468976401205E-4 30 0.0 0.0 0.0 0.23949498398752225 4.6145468976401205E-4 31 0.0 0.0 0.0 0.27687281385840723 4.6145468976401205E-4 32 0.0 0.0 0.0 0.343783743874189 4.6145468976401205E-4 33 0.0 0.0 0.0 0.40700303637185864 4.6145468976401205E-4 34 0.0 0.0 0.0 0.48360451487268463 9.229093795280241E-4 35 0.0 0.0 0.0 0.6714165736066375 9.229093795280241E-4 36 0.0 0.0 0.0 0.8140060727437173 9.229093795280241E-4 37 0.0 0.0 0.0 1.2445432982935405 9.229093795280241E-4 38 0.0 0.0 0.0 1.6930772567441603 9.229093795280241E-4 39 0.0 0.0 0.0 2.2403625188042784 9.229093795280241E-4 40 0.0 0.0 0.0 2.894243814199884 9.229093795280241E-4 41 0.0 0.0 0.0 3.7354757136396777 9.229093795280241E-4 42 0.0 0.0 0.0 4.583167978736168 9.229093795280241E-4 43 0.0 0.0 0.0 5.420246785968086 9.229093795280241E-4 44 0.0 0.0 0.0 6.260094321338587 9.229093795280241E-4 45 0.0 0.0 0.0 6.791690123946729 9.229093795280241E-4 46 0.0 0.0 0.0 7.43126632395965 9.229093795280241E-4 47 0.0 0.0 0.0 8.212970568419887 9.229093795280241E-4 48 0.0 0.0 0.0 8.748719463235904 9.229093795280241E-4 49 0.0 0.0 0.0 9.207405424861333 9.229093795280241E-4 50 0.0 0.0 0.0 9.918507101787675 9.229093795280241E-4 51 0.0 0.0 0.0 10.685906250865228 9.229093795280241E-4 52 0.0 0.0 0.0 11.415004660692366 9.229093795280241E-4 53 0.0 0.0 0.0 12.369754413814107 9.229093795280241E-4 54 0.0 0.0 0.0 13.165302298967264 9.229093795280241E-4 55 0.0 0.0 0.0 13.663673363912398 9.229093795280241E-4 56 0.0 0.0 0.0 14.219726265078032 9.229093795280241E-4 57 0.0 0.0 0.0 14.670106042287708 9.229093795280241E-4 58 0.0 0.0 0.0 15.065111256725702 9.229093795280241E-4 59 0.0 0.0 0.0 15.514106669866086 9.229093795280241E-4 60 0.0 0.0 0.0 15.818666765110335 9.229093795280241E-4 61 0.0 0.0 0.0 16.14260795732467 9.229093795280241E-4 62 0.0 0.0 0.0 16.39410076324606 9.229093795280241E-4 63 0.0 0.0 0.0 16.742499054017888 9.229093795280241E-4 64 0.0 0.0 0.0 17.080283886925145 9.229093795280241E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTTTCG 15 0.0022226656 69.99838 35 AAACGCG 15 0.0022226656 69.99838 32 CGCGTAT 30 8.358404E-6 58.33199 35 ACGCGTA 25 2.3869668E-4 55.998707 34 TCTCGGT 215 0.0 55.347565 43 CTCTCGG 45 2.6904672E-8 54.44319 42 GCCGTAT 120 0.0 52.49879 54 GGTCCGT 20 0.006945099 52.498787 15 GGACCGT 20 0.006945099 52.498787 6 GACTAGC 20 0.006945099 52.498787 23 TAGATCC 35 2.0821033E-5 49.998844 39 AGATCTC 170 0.0 49.410625 40 ATCTCGG 200 0.0 48.998867 42 GTAGATC 200 0.0 48.998867 38 TAGATCT 195 0.0 48.46042 39 TCTCTCG 45 1.6770173E-6 46.676365 64 CTAAATT 30 5.8694574E-4 46.665592 20 AGTCGAG 30 5.8694574E-4 46.665592 24 GCCGACT 145 0.0 45.861008 20 GATCTCG 195 0.0 44.870758 41 >>END_MODULE