##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779746_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 216706 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.690474652293894 34.0 34.0 34.0 34.0 34.0 2 33.68657074561849 34.0 34.0 34.0 34.0 34.0 3 33.705296576929115 34.0 34.0 34.0 34.0 34.0 4 33.74413260361965 34.0 34.0 34.0 34.0 34.0 5 33.74758428469909 34.0 34.0 34.0 34.0 34.0 6 37.42499054017886 38.0 38.0 38.0 37.0 38.0 7 37.4112207322363 38.0 38.0 38.0 37.0 38.0 8 37.315242771312285 38.0 38.0 38.0 36.0 38.0 9 37.301182246915175 38.0 38.0 38.0 36.0 38.0 10-11 37.2343659151108 38.0 38.0 38.0 36.0 38.0 12-13 37.21728055522228 38.0 38.0 38.0 36.0 38.0 14-15 37.235609535499705 38.0 38.0 38.0 36.0 38.0 16-17 37.20931123273006 38.0 38.0 38.0 36.0 38.0 18-19 37.20801223777838 38.0 38.0 38.0 36.0 38.0 20-21 37.220395374378185 38.0 38.0 38.0 36.0 38.0 22-23 37.18900953365389 38.0 38.0 38.0 36.0 38.0 24-25 37.183617435604 38.0 38.0 38.0 36.0 38.0 26-27 37.08777560381346 38.0 38.0 38.0 36.0 38.0 28-29 37.05497771173849 38.0 38.0 38.0 36.0 38.0 30-31 36.97043459802682 38.0 38.0 38.0 35.5 38.0 32-33 36.99271824499553 38.0 38.0 38.0 35.5 38.0 34-35 36.78683792788386 38.0 37.5 38.0 34.5 38.0 36-37 36.83913689514827 38.0 37.0 38.0 35.0 38.0 38-39 36.49984541267893 38.0 37.0 38.0 34.0 38.0 40-41 36.88430408018237 38.0 37.0 38.0 35.0 38.0 42-43 37.022528217954275 38.0 38.0 38.0 36.0 38.0 44-45 37.019152676898656 38.0 38.0 38.0 36.0 38.0 46-47 37.036385702287895 38.0 38.0 38.0 36.0 38.0 48-49 37.01953568429116 38.0 38.0 38.0 36.0 38.0 50-51 36.95859367068748 38.0 38.0 38.0 35.0 38.0 52-53 36.95304929258997 38.0 38.0 38.0 35.5 38.0 54-55 36.96131163881019 38.0 38.0 38.0 36.0 38.0 56-57 36.966724502321114 38.0 38.0 38.0 36.0 38.0 58-59 36.90940490803208 38.0 38.0 38.0 35.0 38.0 60-61 36.94785792733012 38.0 38.0 38.0 35.5 38.0 62-63 36.96159774071784 38.0 38.0 38.0 36.0 38.0 64-65 36.98375448764686 38.0 38.0 38.0 36.0 38.0 66-67 36.93080717654334 38.0 38.0 38.0 35.0 38.0 68-69 36.75964209574262 38.0 38.0 38.0 35.0 38.0 70-71 35.619666737423046 38.0 37.0 38.0 28.5 38.0 72-73 33.691919005472855 38.0 35.5 38.0 20.0 38.0 74-75 33.44346026413666 38.0 35.5 38.0 15.0 38.0 76 33.05354258765332 38.0 34.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 7.0 22 17.0 23 33.0 24 52.0 25 98.0 26 184.0 27 369.0 28 630.0 29 1064.0 30 1656.0 31 2664.0 32 4179.0 33 6858.0 34 11812.0 35 26312.0 36 35412.0 37 125356.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.27956770924663 15.44673428516054 10.718208079148708 37.555489926444125 2 19.21497328177346 15.746679833507148 40.9896357276679 24.04871115705149 3 17.562042583038775 17.74939318708296 37.938958773638014 26.74960545624025 4 13.139922291030242 26.544258119295268 31.184185024872406 29.131634564802084 5 13.436637656548504 29.42142810997388 42.11050916910469 15.03142506437293 6 27.36241728424686 42.46306055208439 15.507646304209391 14.66687585945936 7 25.94898156949969 25.109595488818954 17.850913218831042 31.090509722850314 8 22.650503447066534 41.538766808487075 15.53071903869759 20.2800107057488 9 20.89466835251447 15.32352588299355 16.241820715623934 47.53998504886805 10-11 23.2997701955645 27.358494919383862 27.0516275506908 22.29010733436084 12-13 22.720644559910664 18.175777320424906 28.268252840253616 30.835325279410814 14-15 21.043948944653124 18.129401124103627 19.274962391442784 41.55168753980047 16-17 29.24215296300056 27.258128524360192 18.904875730252048 24.594842782387197 18-19 29.426273384216405 21.5520105580833 19.675505062157946 29.34621099554235 20-21 21.57139165505339 20.450287486271723 19.68150397312488 38.29681688555001 22-23 22.01415742988196 27.915240002584145 19.370022057534168 30.700580509999725 24-25 29.148246933633587 28.252332653456758 19.302880400173507 23.29654001273615 26-27 29.191162219781642 29.437348296770736 19.88039094441317 21.491098539034454 28-29 21.96824268825044 28.989275793009885 20.712393750057682 28.330087768681995 30-31 29.07187618247764 22.016233975985898 27.134689394848323 21.777200446688138 32-33 28.243795741696122 28.341854863270978 22.451847203123126 20.962502191909778 34-35 22.485302668131016 28.54351056269785 28.172962446817344 20.79822432235379 36-37 20.605566989377312 27.447094219818556 30.391636595202716 21.555702195601416 38-39 20.289701254233847 21.5520105580833 29.590781981117274 28.56750620656558 40-41 20.100735558775483 19.197668730907314 30.285040561867234 30.416555148449977 42-43 27.75003922364863 18.901645547423698 29.95279318523714 23.39552204369053 44-45 20.003368619235275 26.49303664873146 31.4061447306489 22.097450001384363 46-47 26.68269452622447 19.2465829280223 24.906324697977904 29.164397847775327 48-49 25.970208485228834 18.718217308242505 23.853054368591547 31.458519837937114 50-51 19.308417856450674 19.421935710132622 31.2778603268945 29.9917861065222 52-53 17.403532897104835 19.51468810277519 38.872020156340845 24.20975884377913 54-55 17.137734995800763 19.418936254649154 32.74459405830941 30.698734691240663 56-57 24.534622945372995 19.482617001836587 24.89294251197475 31.089817540815666 58-59 18.018651998560262 19.86100984744308 37.03819921921866 25.08213893477799 60-61 24.597611510525784 27.505698965418585 24.11193044954916 23.78475907450647 62-63 17.52420329847812 37.39836460457948 20.856598340608937 24.220833756333466 64-65 17.464214188808803 38.7534263010715 19.639280869011472 24.14307864110823 66-67 17.28263176838666 38.56399915092337 18.947560289055218 25.205808791634748 68-69 17.209952654748832 38.98530728267791 19.07561396546473 24.729126097108526 70-71 17.9014425073602 37.664854687918194 19.250043838195527 25.183658966526078 72-73 18.68545402526926 34.084427750039225 20.34507581700553 26.885042407685987 74-75 19.231124195915204 32.77781879597242 20.913357267449907 27.077699740662464 76 19.33818168394045 32.99770195564498 21.223224091626445 26.44089226878813 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 3.0 15 8.5 16 9.5 17 8.0 18 14.5 19 33.0 20 59.5 21 74.0 22 93.5 23 138.0 24 213.5 25 264.0 26 357.5 27 481.0 28 626.5 29 742.0 30 984.0 31 1341.0 32 1676.5 33 1897.0 34 2351.5 35 3164.5 36 4107.5 37 4692.0 38 11007.5 39 18349.5 40 17732.5 41 14539.0 42 12989.0 43 11775.0 44 10277.5 45 9890.5 46 9787.0 47 9762.0 48 9449.5 49 8691.5 50 8221.0 51 7933.0 52 6878.0 53 5585.5 54 5060.0 55 4848.5 56 4342.5 57 3809.5 58 3571.0 59 3426.5 60 3211.0 61 3154.5 62 3169.0 63 3127.5 64 3102.0 65 3076.0 66 3008.0 67 2982.0 68 2872.5 69 2768.0 70 2758.0 71 2743.0 72 2641.0 73 2448.5 74 2200.5 75 2043.0 76 1946.0 77 1693.5 78 1386.5 79 1235.0 80 1112.0 81 802.0 82 527.5 83 440.0 84 367.0 85 237.0 86 145.5 87 111.0 88 83.5 89 45.0 90 21.5 91 6.5 92 4.0 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 216706.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.889287790831816 #Duplication Level Percentage of deduplicated Percentage of total 1 45.12198651347206 14.389080136221425 2 24.528984458657714 15.644236892379537 3 13.440222267241628 12.857973475584433 4 6.338089312071311 8.084686164665492 5 3.2746794779035104 5.221359814679796 6 1.6930512545943914 3.239411922143365 7 1.137383150522386 2.5389237030815948 8 0.7510201719098197 1.9159598719001782 9 0.5990796747026308 1.719380174060709 >10 3.060515729459092 15.989866455012782 >50 0.031835151795791966 0.6451136562900889 >100 0.014470523543541806 1.073343608391092 >500 0.0028941047087083613 0.7207922254113869 >1k 0.004341157063062541 2.9749983849085857 >5k 0.0 0.0 >10k+ 0.0014470523543541807 12.984873515269534 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT 28139 12.984873515269534 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 3048 1.4065138944007087 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 2198 1.0142774081012984 No Hit ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT 1201 0.5542070824065785 Illumina PCR Primer Index 10 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 861 0.3973124878868144 No Hit CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 701 0.32347973752457243 Illumina PCR Primer Index 10 (95% over 21bp) CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 424 0.19565678845994114 Illumina PCR Primer Index 10 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT 350 0.16150914141740422 No Hit CTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 287 0.13243749596227147 No Hit TTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 256 0.11813240057958709 Illumina PCR Primer Index 10 (95% over 21bp) TATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCT 251 0.11582512713076702 Illumina PCR Primer Index 10 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006460365656696169 0.0 2 0.0 0.0 0.0 0.008306184415752217 0.0 3 0.0 0.0 0.0 0.008306184415752217 0.0 4 0.0 0.0 0.0 0.012920731313392338 0.0 5 0.0 0.0 0.0 0.015228004762212399 0.0 6 0.0 0.0 0.0 0.015228004762212399 0.0 7 0.0 0.0 0.0 0.01568945945197641 0.0 8 0.0 0.0 0.0 0.016150914141740424 0.0 9 0.0 0.0 0.0 0.020765461039380543 0.0 10 0.0 0.0 0.0 0.021688370418908566 0.0 11 0.0 0.0 0.0 0.023534189177964616 0.0 12 0.0 0.0 0.0 0.023534189177964616 0.0 13 0.0 0.0 0.0 0.025380007937020665 0.0 14 0.0 0.0 0.0 0.027225826696076712 0.0 15 0.0 0.0 0.0 0.030456009524424798 0.0 16 0.0 0.0 0.0 0.030456009524424798 0.0 17 0.0 0.0 0.0 0.03322473766300887 0.0 18 0.0 0.0 0.0 0.03507055642206492 0.0 19 0.0 0.0 0.0 0.03645492049135696 0.0 20 0.0 0.0 0.0 0.03968510331970504 0.0 21 0.0 0.0 0.0 0.04060801269923306 0.0 22 0.0 0.0 0.0 0.04245383145828911 0.0 23 0.0 0.0 0.0 0.045684014286637195 0.0 24 0.0 0.0 0.0 0.04845274242522127 0.0 25 0.0 0.0 0.0 0.06045056435908558 0.0 26 0.0 0.0 0.0 0.06737238470554577 0.0 27 0.0 0.0 0.0 0.12366985685675523 0.0 28 0.0 0.0 0.0 0.19750260721899718 0.0 29 0.0 0.0 0.0 0.27318117634029515 0.0 30 0.0 0.0 0.0 0.3479368360820651 0.0 31 0.0 0.0 0.0 0.4517641412789678 0.0 32 0.0 0.0 0.0 0.5680507230994989 0.0 33 0.0 0.0 0.0 0.7078714940979945 0.0 34 0.0 0.0 0.0 0.8919919153138354 0.0 35 0.0 0.0 0.0 1.1799396417265788 0.0 36 0.0 0.0 0.0 1.6520077893551632 0.0 37 0.0 0.0 0.0 2.301735992542892 0.0 38 0.0 0.0 0.0 3.05713731968658 0.0 39 0.0 0.0 0.0 3.855453932978321 0.0 40 0.0 0.0 0.0 4.829584783070151 0.0 41 0.0 0.0 0.0 5.961071682371508 0.0 42 0.0 0.0 0.0 7.162238239827231 0.0 43 0.0 0.0 0.0 8.315413509547497 0.0 44 0.0 0.0 0.0 9.42105894622207 0.0 45 0.0 0.0 0.0 10.465792363847793 0.0 46 0.0 0.0 0.0 11.513755964301865 0.0 47 0.0 0.0 0.0 12.610633761870922 0.0 48 0.0 0.0 0.0 13.58107297444464 0.0 49 0.0 0.0 0.0 14.476756527276587 0.0 50 0.0 0.0 0.0 15.351674619069154 0.0 51 0.0 0.0 0.0 16.271815270458593 0.0 52 0.0 0.0 0.0 17.311472686496913 0.0 53 0.0 0.0 0.0 18.372357018264378 0.0 54 0.0 0.0 0.0 19.28834457744594 0.0 55 0.0 0.0 0.0 20.11527138150305 0.0 56 0.0 0.0 0.0 20.914049449484555 0.0 57 0.0 0.0 0.0 21.673603868836118 0.0 58 0.0 0.0 0.0 22.371784814449068 0.0 59 0.0 0.0 0.0 23.033972294260426 0.0 60 0.0 0.0 0.0 23.71415650697258 0.0 61 0.0 0.0 0.0 24.394802174374497 0.0 62 0.0 0.0 0.0 25.155740957795356 0.0 63 0.0 0.0 0.0 25.903297555213054 0.0 64 0.0 0.0 0.0 26.64485524166382 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGGTA 15 0.002222462 70.0 30 AATGCGT 15 0.002222462 70.0 8 GAGTATT 25 2.3866948E-4 56.000004 29 GTGGATA 20 0.0069444645 52.5 12 TATACGG 20 0.0069444645 52.5 4 CAATCGC 20 0.0069444645 52.5 53 CAGAGCG 20 0.0069444645 52.5 4 TCGAATG 20 0.0069444645 52.5 16 AATGTCC 20 0.0069444645 52.5 29 ATCGAAT 20 0.0069444645 52.5 68 TGCGTGG 20 0.0069444645 52.5 38 AAATGCG 20 0.0069444645 52.5 7 GCGCTAT 35 2.0818188E-5 50.0 19 TCTCGTA 3945 0.0 49.416985 38 CCGTCTT 4070 0.0 49.275185 47 TCTTCTG 4060 0.0 49.224136 50 CTTTATA 185 0.0 49.18919 2 TATGCCG 4080 0.0 49.15441 43 CTCGTAT 4070 0.0 49.103195 39 CGTATGC 4080 0.0 49.06863 41 >>END_MODULE