SRR1779745_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779745_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	325828
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	24460	7.507028248032705	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2934	0.900475097290595	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	1788	0.5487557852609353	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	946	0.2903372331414121	RNA PCR Primer, Index 24 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	736	0.22588605030875183	No Hit
CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	647	0.1985710252034816	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT	415	0.12736781369311417	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	413	0.12675399290423167	RNA PCR Primer, Index 24 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAATG	20	0.006947588	52.500004	4
TCTCGTA	3375	0.0	49.881485	38
ATCTCGT	3430	0.0	49.08163	37
CTCGTAT	3510	0.0	49.05983	39
TCGTATG	3520	0.0	49.01989	40
CGTATGC	3535	0.0	48.910892	41
CCGTCTT	3515	0.0	48.89047	47
CTTGAAA	3525	0.0	48.851067	57
GTATGCC	3545	0.0	48.77292	42
TATGCCG	3570	0.0	48.62745	43
GCCGTCT	3555	0.0	48.43882	46
TCTTCTG	3560	0.0	48.370785	50
TTGAAAA	3560	0.0	48.370785	58
CTGCTTG	3575	0.0	48.363636	54
ATGCCGT	3590	0.0	48.259052	44
GTCTTCT	3570	0.0	48.23529	49
GCTTGAA	3595	0.0	48.191933	56
TGCTTGA	3605	0.0	48.15534	55
GCATCTC	3480	0.0	47.97414	35
TGAAAAA	3605	0.0	47.86408	59