##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779745_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 325828 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.675021790638006 34.0 34.0 34.0 34.0 34.0 2 33.67905152411702 34.0 34.0 34.0 34.0 34.0 3 33.698761309648035 34.0 34.0 34.0 34.0 34.0 4 33.73507494751832 34.0 34.0 34.0 34.0 34.0 5 33.73194446149502 34.0 34.0 34.0 34.0 34.0 6 37.403485888260064 38.0 38.0 38.0 37.0 38.0 7 37.38510195563303 38.0 38.0 38.0 37.0 38.0 8 37.287065568336665 38.0 38.0 38.0 36.0 38.0 9 37.2768607977215 38.0 38.0 38.0 36.0 38.0 10-11 37.21134003216421 38.0 38.0 38.0 36.0 38.0 12-13 37.18420148053574 38.0 38.0 38.0 36.0 38.0 14-15 37.20622537044085 38.0 38.0 38.0 36.0 38.0 16-17 37.20347391875468 38.0 38.0 38.0 36.0 38.0 18-19 37.201862639183865 38.0 38.0 38.0 36.0 38.0 20-21 37.19749683882294 38.0 38.0 38.0 36.0 38.0 22-23 37.15285058374357 38.0 38.0 38.0 36.0 38.0 24-25 37.15686650625483 38.0 38.0 38.0 36.0 38.0 26-27 37.07708514921984 38.0 38.0 38.0 36.0 38.0 28-29 37.0204893379329 38.0 38.0 38.0 35.5 38.0 30-31 36.94038265587979 38.0 38.0 38.0 35.0 38.0 32-33 36.972528450593565 38.0 38.0 38.0 35.0 38.0 34-35 36.970106927581426 38.0 38.0 38.0 35.5 38.0 36-37 37.00522668401733 38.0 38.0 38.0 36.0 38.0 38-39 36.636062585167636 38.0 37.0 38.0 34.0 38.0 40-41 36.87515498974919 38.0 37.5 38.0 35.0 38.0 42-43 36.9902387149048 38.0 38.0 38.0 36.0 38.0 44-45 36.98988269884724 38.0 38.0 38.0 35.5 38.0 46-47 37.01837319076323 38.0 38.0 38.0 36.0 38.0 48-49 37.01157512552635 38.0 38.0 38.0 36.0 38.0 50-51 36.966336533385714 38.0 38.0 38.0 35.0 38.0 52-53 36.94533925875001 38.0 38.0 38.0 35.0 38.0 54-55 36.93718158046577 38.0 38.0 38.0 35.0 38.0 56-57 36.97465380507507 38.0 38.0 38.0 36.0 38.0 58-59 36.92697220619468 38.0 38.0 38.0 35.0 38.0 60-61 36.9774620351842 38.0 38.0 38.0 36.0 38.0 62-63 36.9748180021361 38.0 38.0 38.0 36.0 38.0 64-65 36.98579158328934 38.0 38.0 38.0 36.0 38.0 66-67 36.94797715359024 38.0 38.0 38.0 35.5 38.0 68-69 36.85040113188553 38.0 38.0 38.0 35.0 38.0 70-71 36.19082921050371 38.0 37.0 38.0 32.5 38.0 72-73 35.08564948377672 38.0 37.0 38.0 24.0 38.0 74-75 34.97120413224155 38.0 37.0 38.0 23.5 38.0 76 34.503980627815906 38.0 36.0 38.0 23.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 0.0 17 1.0 18 0.0 19 2.0 20 4.0 21 16.0 22 27.0 23 54.0 24 67.0 25 146.0 26 265.0 27 490.0 28 830.0 29 1392.0 30 2299.0 31 3779.0 32 5936.0 33 9706.0 34 16099.0 35 32366.0 36 47347.0 37 205000.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.39309083320034 16.53326294854954 10.658077267760904 32.41556895048922 2 20.883103968965223 17.219514590520152 36.25440416416023 25.642977276354394 3 19.7189928428496 18.739641774187607 32.98366009059995 28.55770529236284 4 14.630725413408301 21.562603582258124 31.6823600181691 32.12431098616448 5 15.108891807947753 30.567968375952958 37.79662889622746 16.526510919871836 6 30.335944117755382 38.160317713640325 15.866346661428729 15.637391507175566 7 28.366500116625947 25.967688473673228 18.344341186147293 27.32147022355353 8 25.03161177062745 37.05789557680739 16.712191708508783 21.198300944056374 9 22.826153676172705 15.300403894079084 17.540849773500128 44.33259265624808 10-11 26.088457713885855 24.951661612875505 25.420313785187275 23.539566888051365 12-13 24.985421756264042 18.580355279472606 26.256491154842433 30.177731809420923 14-15 23.440281375449622 19.03980013995114 19.957615674527666 37.56230281007157 16-17 28.41575923493377 25.835563548866276 20.2280037320304 25.52067348416956 18-19 28.358366991173256 22.367783002074717 20.933130363259142 28.340719643492886 20-21 23.549541475870704 21.683526277667973 21.11021766085174 33.656714585609585 22-23 24.115023877628687 25.843543219121745 20.857476951029376 29.18395595222019 24-25 28.38875112022294 25.815460918030368 20.753894692905458 25.041893268841232 26-27 27.901530869047477 26.601611893391606 21.543268227408326 23.953589010152594 28-29 28.296984912285012 22.021588077144997 22.11212664350516 27.56930036706483 30-31 28.459340510944426 21.248634248744736 26.14400849527972 24.14801674503112 32-33 24.101366365076053 26.280890531200512 25.965079735320472 23.65266336840296 34-35 27.51344267527653 26.300993162036413 22.806511410928465 23.379052751758596 36-37 24.492523662791413 25.326399204488258 21.61401107332703 28.567066059393298 38-39 22.641853984310742 22.33218139631953 26.6640681586604 28.36189646070933 40-41 22.86451747547786 20.50683182538026 27.771707772198827 28.856942926943052 42-43 27.13272033097217 20.088666412954073 27.57896804448973 25.199645211584027 44-45 22.385737260149526 24.711964594816894 28.655149342597934 24.247148802435643 46-47 26.26907448101452 20.584633610371117 24.902555949764906 28.243735958849452 48-49 25.690088021901126 20.218489509802716 24.282290042599165 29.809132425696994 50-51 21.61615944608812 20.67962237745068 28.73555986594154 28.96865831051966 52-53 20.41920890776729 20.817271689357575 33.146015689259364 25.617503713615775 54-55 20.061044477454363 20.828473918754682 29.473679364572718 29.636802239218234 56-57 24.21246792786378 20.71906036313638 25.201947039542333 29.866524669457505 58-59 20.496857237560924 21.097020513890765 32.069067115165055 26.33705513338326 60-61 24.61881729010398 25.324557742121613 24.355488171673397 25.70113679610101 62-63 19.968664448727548 31.358262641639143 22.4086020845354 26.264470825097902 64-65 20.15158304381453 32.10666363848411 21.480965417336755 26.26078790036461 66-67 20.193015947064094 32.032698233423766 20.87757958186528 26.896706237646857 68-69 20.121505825159286 32.35341959561487 20.932823452864703 26.59225112636115 70-71 20.82878082914912 31.142658089544177 21.188326356237035 26.840234725069667 72-73 21.3637256466602 28.75044502007194 21.607105589452104 28.278723743815753 74-75 21.81427010569994 28.09334986557325 22.068698822691726 28.023681206035082 76 22.213560528867994 28.212124188222003 22.04905655744749 27.525258725462514 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 3.5 14 5.5 15 7.0 16 8.5 17 8.0 18 10.0 19 30.0 20 55.5 21 63.0 22 98.5 23 188.0 24 302.5 25 363.0 26 471.5 27 657.0 28 979.5 29 1225.0 30 1382.5 31 1722.5 32 2448.5 33 2992.0 34 3403.5 35 4270.0 36 5423.5 37 6122.0 38 6696.0 39 8653.5 40 15800.0 41 22159.5 42 22756.0 43 21375.0 44 19081.5 45 16909.5 46 15650.0 47 15319.0 48 14187.0 49 12880.5 50 12375.0 51 11978.0 52 10710.5 53 9553.5 54 9267.0 55 9028.0 56 8628.5 57 8099.5 58 7731.0 59 7728.0 60 7952.5 61 8044.0 62 7908.0 63 8064.0 64 8104.0 65 7818.0 66 7357.5 67 7067.0 68 6677.0 69 5807.5 70 5101.5 71 4875.0 72 4411.5 73 3623.5 74 3014.0 75 2729.0 76 2434.0 77 1953.0 78 1566.5 79 1366.0 80 1178.0 81 859.0 82 624.5 83 521.0 84 413.5 85 243.0 86 155.5 87 131.0 88 87.0 89 39.0 90 25.5 91 13.0 92 10.0 93 5.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 325828.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.657760484652805 #Duplication Level Percentage of deduplicated Percentage of total 1 49.5157716197698 18.1513729625029 2 24.938127919398948 18.28351840409919 3 11.85749123049209 13.040072204287503 4 5.30311789608507 7.776017026262496 5 2.4071294493737647 4.411998740534883 6 1.259745257011531 2.770766394192366 7 0.8283624883942698 2.1256139585819693 8 0.5680798724447115 1.6659628720184283 9 0.4676689294718773 1.542932604242466 >10 2.772517830877551 18.157388771817963 >50 0.0660919696709446 1.5870765949062657 >100 0.010875893743319997 0.8234397405455696 >500 0.0025098216330738453 0.7142611380747231 >1k 0.0016732144220492303 1.4481498900767895 >5k 0.0 0.0 >10k+ 8.366072110246152E-4 7.501428697856475 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 24460 7.507028248032705 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 2934 0.900475097290595 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1788 0.5487557852609353 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 946 0.2903372331414121 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 736 0.22588605030875183 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 647 0.1985710252034816 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 415 0.12736781369311417 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 413 0.12675399290423167 RNA PCR Primer, Index 24 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.003989835127736106 0.0 2 0.0 0.0 0.0 0.003989835127736106 0.0 3 0.0 0.0 0.0 0.003989835127736106 0.0 4 0.0 0.0 0.0 0.011048774199884601 0.0 5 0.0 0.0 0.0 0.01135568459432584 0.0 6 0.0 0.0 0.0 0.01135568459432584 3.069103944412389E-4 7 0.0 0.0 0.0 0.012583326172090797 3.069103944412389E-4 8 0.0 0.0 0.0 0.013504057355414514 3.069103944412389E-4 9 0.0 0.0 0.0 0.015959340510944425 3.069103944412389E-4 10 0.0 0.0 0.0 0.018414623666474336 3.069103944412389E-4 11 0.0 0.0 0.0 0.02056299642756301 3.069103944412389E-4 12 0.0 0.0 0.0 0.02056299642756301 3.069103944412389E-4 13 0.0 0.0 0.0 0.021483727610886724 3.069103944412389E-4 14 0.0 0.0 0.0 0.024859741949740354 3.069103944412389E-4 15 0.0 0.0 0.0 0.027008114710829027 3.069103944412389E-4 16 0.0 0.0 0.0 0.02854266668303522 3.069103944412389E-4 17 0.0 0.0 0.0 0.02854266668303522 3.069103944412389E-4 18 0.0 0.0 0.0 0.030077218655241416 3.069103944412389E-4 19 0.0 0.0 0.0 0.03161177062744761 3.069103944412389E-4 20 0.0 0.0 0.0 0.03590851614962495 3.069103944412389E-4 21 0.0 0.0 0.0 0.03774997851627239 3.069103944412389E-4 22 0.0 0.0 0.0 0.04173981364400849 3.069103944412389E-4 23 0.0 0.0 0.0 0.04327436561621469 3.069103944412389E-4 24 0.0 0.0 0.0 0.048184931927274514 3.069103944412389E-4 25 0.0 0.0 0.0 0.0512540358716869 3.069103944412389E-4 26 0.0 0.0 0.0 0.058926795732717877 3.069103944412389E-4 27 0.0 0.0 0.0 0.10158734056005009 3.069103944412389E-4 28 0.0 0.0 0.0 0.15192064524841328 3.069103944412389E-4 29 0.0 0.0 0.0 0.20164012914789398 3.069103944412389E-4 30 0.0 0.0 0.0 0.27222951986937893 3.069103944412389E-4 31 0.0 0.0 0.0 0.332690867574303 3.069103944412389E-4 32 0.0 0.0 0.0 0.4035871686902292 3.069103944412389E-4 33 0.0 0.0 0.0 0.5199062081834588 3.069103944412389E-4 34 0.0 0.0 0.0 0.6693715702763421 3.069103944412389E-4 35 0.0 0.0 0.0 0.8792982800741496 3.069103944412389E-4 36 0.0 0.0 0.0 1.2475907534036363 3.069103944412389E-4 37 0.0 0.0 0.0 1.7914359723535116 3.069103944412389E-4 38 0.0 0.0 0.0 2.3880697791472802 3.069103944412389E-4 39 0.0 0.0 0.0 3.0393336361515892 3.069103944412389E-4 40 0.0 0.0 0.0 3.7740771204439154 3.069103944412389E-4 41 0.0 0.0 0.0 4.659206698012448 3.069103944412389E-4 42 0.0 0.0 0.0 5.5676614655585155 3.069103944412389E-4 43 0.0 0.0 0.0 6.489927200854439 3.069103944412389E-4 44 0.0 0.0 0.0 7.380274255128473 3.069103944412389E-4 45 0.0 0.0 0.0 8.27645260689689 3.069103944412389E-4 46 0.0 0.0 0.0 9.1904317615429 3.069103944412389E-4 47 0.0 0.0 0.0 10.084768650944671 3.069103944412389E-4 48 0.0 0.0 0.0 10.936444995519109 3.069103944412389E-4 49 0.0 0.0 0.0 11.730115275544152 3.069103944412389E-4 50 0.0 0.0 0.0 12.505370931902721 3.069103944412389E-4 51 0.0 0.0 0.0 13.31960420835533 3.069103944412389E-4 52 0.0 0.0 0.0 14.183250058312975 3.069103944412389E-4 53 0.0 0.0 0.0 15.087101169942423 3.069103944412389E-4 54 0.0 0.0 0.0 15.961488883705513 3.069103944412389E-4 55 0.0 0.0 0.0 16.773880697791473 3.069103944412389E-4 56 0.0 0.0 0.0 17.461973802128732 3.069103944412389E-4 57 0.0 0.0 0.0 18.14331487778828 3.069103944412389E-4 58 0.0 0.0 0.0 18.817597014375682 3.069103944412389E-4 59 0.0 0.0 0.0 19.459653559546755 3.069103944412389E-4 60 0.0 0.0 0.0 20.085443853812443 3.069103944412389E-4 61 0.0 0.0 0.0 20.713689431233657 3.069103944412389E-4 62 0.0 0.0 0.0 21.28638422726101 3.069103944412389E-4 63 0.0 0.0 0.0 22.024196815497746 3.069103944412389E-4 64 0.0 0.0 0.0 22.72364560442933 3.069103944412389E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAATG 20 0.006947588 52.500004 4 TCTCGTA 3375 0.0 49.881485 38 ATCTCGT 3430 0.0 49.08163 37 CTCGTAT 3510 0.0 49.05983 39 TCGTATG 3520 0.0 49.01989 40 CGTATGC 3535 0.0 48.910892 41 CCGTCTT 3515 0.0 48.89047 47 CTTGAAA 3525 0.0 48.851067 57 GTATGCC 3545 0.0 48.77292 42 TATGCCG 3570 0.0 48.62745 43 GCCGTCT 3555 0.0 48.43882 46 TCTTCTG 3560 0.0 48.370785 50 TTGAAAA 3560 0.0 48.370785 58 CTGCTTG 3575 0.0 48.363636 54 ATGCCGT 3590 0.0 48.259052 44 GTCTTCT 3570 0.0 48.23529 49 GCTTGAA 3595 0.0 48.191933 56 TGCTTGA 3605 0.0 48.15534 55 GCATCTC 3480 0.0 47.97414 35 TGAAAAA 3605 0.0 47.86408 59 >>END_MODULE