##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779744_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 105751 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.65262739832247 34.0 34.0 34.0 34.0 34.0 2 33.65794176887216 34.0 34.0 34.0 34.0 34.0 3 33.67060358767293 34.0 34.0 34.0 34.0 34.0 4 33.71371429111782 34.0 34.0 34.0 34.0 34.0 5 33.71086798233586 34.0 34.0 34.0 34.0 34.0 6 37.393707860918575 38.0 38.0 38.0 37.0 38.0 7 37.37118325122221 38.0 38.0 38.0 37.0 38.0 8 37.259193766489204 38.0 38.0 38.0 36.0 38.0 9 37.29172300971149 38.0 38.0 38.0 36.0 38.0 10-11 37.182958080774654 38.0 38.0 38.0 36.0 38.0 12-13 37.15527512742196 38.0 38.0 38.0 36.0 38.0 14-15 37.19444260574368 38.0 38.0 38.0 36.0 38.0 16-17 37.09575795973561 38.0 38.0 38.0 35.5 38.0 18-19 37.077167118987056 38.0 38.0 38.0 35.5 38.0 20-21 37.13674102372555 38.0 38.0 38.0 36.0 38.0 22-23 37.11266560127091 38.0 38.0 38.0 36.0 38.0 24-25 37.05096878516515 38.0 38.0 38.0 35.5 38.0 26-27 36.98252971603105 38.0 38.0 38.0 35.0 38.0 28-29 36.88814290172197 38.0 37.5 38.0 34.5 38.0 30-31 36.6328781760929 38.0 37.0 38.0 34.0 38.0 32-33 36.63256612230617 38.0 37.0 38.0 34.0 38.0 34-35 36.381395920605954 38.0 37.0 38.0 34.0 38.0 36-37 36.411934638915945 38.0 37.0 38.0 34.0 38.0 38-39 35.57745553233539 38.0 36.0 38.0 31.5 38.0 40-41 36.50690300800938 38.0 37.0 38.0 34.0 38.0 42-43 36.8690461555919 38.0 37.0 38.0 35.0 38.0 44-45 36.86808162570567 38.0 37.5 38.0 34.5 38.0 46-47 36.89714518066023 38.0 38.0 38.0 35.0 38.0 48-49 36.83947669525584 38.0 37.5 38.0 34.5 38.0 50-51 36.71431948634056 38.0 37.0 38.0 34.0 38.0 52-53 36.719789883783605 38.0 37.0 38.0 34.0 38.0 54-55 36.732409149795274 38.0 37.0 38.0 34.5 38.0 56-57 36.7184565630585 38.0 37.0 38.0 34.0 38.0 58-59 36.59288328242759 38.0 37.0 38.0 34.0 38.0 60-61 36.61005096878516 38.0 37.0 38.0 34.0 38.0 62-63 36.684830403495 38.0 37.0 38.0 34.0 38.0 64-65 36.73332167071706 38.0 37.0 38.0 34.0 38.0 66-67 36.59725203544174 38.0 37.0 38.0 34.0 38.0 68-69 36.24858866582822 38.0 37.0 38.0 34.0 38.0 70-71 33.73806394265775 37.5 32.5 38.0 21.0 38.0 72-73 29.66361547408535 37.0 22.0 38.0 11.0 38.0 74-75 29.149435939140055 37.0 21.0 38.0 11.0 38.0 76 28.89773146353226 36.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 5.0 22 10.0 23 29.0 24 31.0 25 73.0 26 157.0 27 249.0 28 443.0 29 790.0 30 1311.0 31 2068.0 32 3013.0 33 5020.0 34 8772.0 35 20025.0 36 21201.0 37 42554.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.742063904833053 11.749297878979869 11.788068197936663 49.72057001825042 2 14.299628372308536 11.177199269983262 52.5706612703426 21.952511087365604 3 14.464165823491031 13.535569403599021 50.341840739094664 21.658424033815283 4 11.053323372828626 38.41192991082827 26.215354937541964 24.319391778801148 5 12.022581346748494 25.47304517214967 49.740427986496584 12.763945494605252 6 22.264564874091025 50.426000699756976 13.076944898866206 14.232489527285793 7 20.011158286919272 22.01113937456856 14.345963631549582 43.63173870696258 8 17.252791935773658 50.96216584240339 11.842914014997493 19.94212820682547 9 16.292990137209102 14.288280961882158 11.161123771879227 58.257605129029514 10-11 19.07594254427854 31.118854668040964 28.725969494378305 21.07923329330219 12-13 18.532212461347882 12.995148982042723 31.863528477272084 36.609110079337306 14-15 18.23528855519097 12.395627464515702 15.351155071819653 54.01792890847368 16-17 34.994940946184904 28.449376365235317 12.494444496978751 24.061238191601024 18-19 35.826138759917164 17.003621715161085 12.742196291288025 34.42804323363372 20-21 19.615417348299307 13.84667757278891 12.49349887944322 54.04440619946856 22-23 18.930317443806675 30.231865419712346 12.53841571238097 38.29940142410001 24-25 35.25025768077843 30.328791217104328 12.276479655038724 22.144471447078516 26-27 35.56372989380715 32.74484402038752 13.4391164149748 18.252309670830535 28-29 19.06837760399429 17.708579587899877 28.965210730867792 34.25783207723804 30-31 17.984699908275097 29.24322228631408 18.253728097133834 34.51834970827699 32-33 17.7137804843453 16.034836550008983 44.96647785836541 21.28490510728031 34-35 33.575569025352 29.643691312611704 19.308091649251544 17.47264801278475 36-37 18.936936766555398 48.323892918270275 14.742650187705081 17.996520127469243 38-39 16.775255080330208 18.3066826791236 31.37748106400885 33.54058117653734 40-41 17.336006278900438 12.867963423513725 33.23230985995404 36.563720437631794 42-43 33.302285557583374 12.916189917825834 32.288110750725764 21.493413773865022 44-45 18.180915546897904 29.149606150296453 34.18029143932445 18.489186863481198 46-47 32.64129890024681 14.337453073729801 19.561989957541773 33.459258068481624 48-49 31.929721704759295 13.098694102183432 16.477385556637763 38.49419863641951 50-51 18.28966156348403 13.28639918298645 33.31930667322295 35.10463258030657 52-53 14.749269510453802 13.397982052179175 49.576836152849616 22.275912284517403 54-55 15.093001484619531 13.214532250286048 36.18831027602576 35.50415598906866 56-57 31.305614131308452 13.34360904388611 20.314228707057143 35.036548117748296 58-59 17.089200102126696 14.515229170409736 46.30216262730376 22.09340810015981 60-61 31.179374190314984 30.765666518519918 19.299581091431758 18.755378199733336 62-63 15.760607464704826 51.47705459050032 13.887339126816766 18.87499881797808 64-65 14.405537536288074 53.2160452383429 13.535096594831256 18.84332063053777 66-67 14.46652986732986 53.59523787009106 13.00555077493357 18.932681487645507 68-69 14.486387835576023 53.65102930468743 13.168196991045003 18.694385868691548 70-71 14.800805666140274 50.335221416345945 14.285916918043329 20.578055999470454 72-73 15.54784351921022 41.39157076528827 17.578084367996517 25.48250134750499 74-75 16.27218655142741 37.80011536533934 19.456080793562236 26.471617289671016 76 15.994174995981126 38.66062732267307 19.204546529110836 26.140651152234966 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 2.0 15 5.0 16 6.5 17 7.0 18 9.0 19 10.0 20 31.5 21 54.0 22 50.0 23 60.0 24 110.0 25 146.0 26 164.0 27 204.5 28 284.5 29 342.0 30 360.0 31 450.5 32 639.0 33 755.0 34 770.0 35 910.0 36 1321.5 37 1608.0 38 7295.0 39 13724.0 40 12760.5 41 9108.5 42 7162.0 43 5665.5 44 3556.0 45 2754.0 46 2565.0 47 2415.0 48 2131.0 49 1950.0 50 1903.0 51 1781.0 52 1576.5 53 1481.5 54 1469.0 55 1535.0 56 1543.5 57 1624.5 58 1763.0 59 1750.0 60 1811.5 61 1934.5 62 1983.0 63 1888.5 64 1828.0 65 1872.5 66 1893.0 67 1903.0 68 1908.0 69 1853.5 70 1814.0 71 1834.0 72 1773.0 73 1653.5 74 1515.0 75 1435.0 76 1357.5 77 1197.0 78 1013.5 79 913.0 80 825.5 81 624.0 82 400.0 83 290.0 84 240.5 85 149.5 86 82.0 87 56.0 88 41.0 89 22.5 90 10.5 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 105751.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.034221898610888 #Duplication Level Percentage of deduplicated Percentage of total 1 49.318992047289676 15.305765430114135 2 25.63758798257107 15.912851887925411 3 13.525701575306986 12.592788720674037 4 6.066607757701332 7.530898052973495 5 2.6356683628385995 4.0897958411740785 6 1.2188061793473293 2.269482085275789 7 0.5819799506383497 1.264290645005721 8 0.34431274566562053 0.8548382521205473 9 0.1553977878667845 0.4340384488089947 >10 0.43877022456503856 2.125748219874989 >50 0.021329108138578263 0.41701733316942635 >100 0.036564185380419875 2.5333093776890996 >500 0.006094030896736646 1.4817826781779841 >1k 0.009141046345104969 6.260933702754584 >5k 0.0 0.0 >10k+ 0.003047015448368323 26.92645932426171 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 28475 26.92645932426171 No Hit TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 3405 3.219827708485026 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 2025 1.9148755094514474 No Hit ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT 1191 1.1262304848181104 TruSeq Adapter, Index 12 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 806 0.7621677336384526 No Hit CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 761 0.7196149445395315 TruSeq Adapter, Index 12 (95% over 21bp) CTTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 481 0.45484203459068945 RNA PCR Primer, Index 12 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCGT 369 0.34893287061115263 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC 270 0.2553167345935263 No Hit CTTAATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 263 0.24869741184480523 No Hit TTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC 260 0.2458605592382105 TruSeq Adapter, Index 12 (95% over 21bp) CTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 216 0.20425338767482104 No Hit TATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCT 197 0.18628665449972104 RNA PCR Primer, Index 12 (95% over 22bp) TCTTATACACATCTCCGAGCCCACGAGACTACTTGAAACCTCGTATGCCG 145 0.13711454265207895 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAACTCGTATGCCGT 122 0.11536533933485262 No Hit CCTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCG 121 0.11441972179932106 No Hit CTTATACACATCTCCGAGCCCACGAGACTACTTGAAAGCTCGTATGCCGT 121 0.11441972179932106 No Hit TCTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT 114 0.1078003990506 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006619322748721053 0.0 2 0.0 0.0 0.0 0.006619322748721053 0.0 3 0.0 0.0 0.0 0.006619322748721053 0.0 4 0.0 0.0 0.0 0.015129880568505262 0.0 5 0.0 0.0 0.0 0.015129880568505262 0.0 6 0.0 0.0 0.0 0.015129880568505262 0.0 7 0.0 0.0 0.0 0.016075498104036842 0.0 8 0.0 0.0 0.0 0.01891235071063158 0.0 9 0.0 0.0 0.0 0.02458605592382105 0.0 10 0.0 0.0 0.0 0.02647729099488421 0.0 11 0.0 0.0 0.0 0.02647729099488421 0.0 12 0.0 0.0 0.0 0.033096613743605265 0.0 13 0.0 0.0 0.0 0.033096613743605265 0.0 14 0.0 0.0 0.0 0.03404223127913684 0.0 15 0.0 0.0 0.0 0.03404223127913684 0.0 16 0.0 0.0 0.0 0.03687908388573158 0.0 17 0.0 0.0 0.0 0.04066155402785789 0.0 18 0.0 0.0 0.0 0.045389641705515786 0.0 19 0.0 0.0 0.0 0.05295458198976842 0.0 20 0.0 0.0 0.0 0.06146513980955263 0.0 21 0.0 0.0 0.0 0.06903008009380526 0.0 22 0.0 0.0 0.0 0.07375816777146316 0.0 23 0.0 0.0 0.0 0.08037749052018421 0.0 24 0.0 0.0 0.0 0.08699681326890527 0.0 25 0.0 0.0 0.0 0.09645298862422105 0.0 26 0.0 0.0 0.0 0.1125284867282579 0.0 27 0.0 0.0 0.0 0.179667331751 0.0 28 0.0 0.0 0.0 0.22883944359864208 0.0 29 0.0 0.0 0.0 0.32150996208073684 0.0 30 0.0 0.0 0.0 0.3905400421745421 0.0 31 0.0 0.0 0.0 0.46902629762366316 0.0 32 0.0 0.0 0.0 0.5607511985702263 0.0 33 0.0 0.0 0.0 0.7035394464354947 0.0 34 0.0 0.0 0.0 0.9853334720239052 0.0 35 0.0 0.0 0.0 1.360743633629942 0.0 36 0.0 0.0 0.0 1.793836464903405 0.0 37 0.0 0.0 0.0 2.376336866790858 0.0 38 0.0 0.0 0.0 2.9966619700995736 0.0 39 0.0 0.0 0.0 3.5952378700910628 0.0 40 0.0 0.0 0.0 4.265680702782952 0.0 41 0.0 0.0 0.0 4.866147837845505 0.0 42 0.0 0.0 0.0 5.566850431674405 0.0 43 0.0 0.0 0.0 6.1833930648409945 0.0 44 0.0 0.0 0.0 6.862346455352668 0.0 45 0.0 0.0 0.0 7.442010004633526 0.0 46 0.0 0.0 0.0 8.136093275713705 0.0 47 0.0 0.0 0.0 8.74507096859604 0.0 48 0.0 0.0 0.0 9.293529139204358 0.0 49 0.0 0.0 0.0 9.809836313604599 0.0 50 0.0 0.0 0.0 10.272243288479542 0.0 51 0.0 0.0 0.0 10.726139705534699 0.0 52 0.0 0.0 0.0 11.18760106287411 0.0 53 0.0 0.0 0.0 11.655681742962242 0.0 54 0.0 0.0 0.0 12.142674773761005 0.0 55 0.0 0.0 0.0 12.60035366095829 0.0 56 0.0 0.0 0.0 13.054250078013446 0.0 57 0.0 0.0 0.0 13.475049881324999 0.0 58 0.0 0.0 0.0 13.9062514775274 0.0 59 0.0 0.0 0.0 14.3374530737298 0.0 60 0.0 0.0 0.0 14.734612438653063 0.0 61 0.0 0.0 0.0 15.126098098363135 0.0 62 0.0 0.0 0.0 15.489215232007263 0.0 63 0.0 0.0 0.0 15.844767425367136 0.0 64 0.0 0.0 0.0 16.243818025361463 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCAAGC 15 0.0022193068 70.00001 25 AAAGCCG 15 0.0022193068 70.00001 69 TTTACAC 60 0.0 64.16667 2 TCTTTAT 115 0.0 57.82609 1 CTCGAAA 25 2.3810889E-4 55.999996 57 TGAACGA 20 0.0069346814 52.5 5 TATGATA 20 0.0069346814 52.5 54 GTTAAAA 20 0.0069346814 52.5 19 ATATAAC 20 0.0069346814 52.5 53 CTTTACA 75 0.0 51.333332 1 GCTTGAA 4405 0.0 51.16913 56 CTTTATA 130 0.0 51.15385 2 TATGCCG 4445 0.0 51.102364 43 TCTCGTA 4400 0.0 51.068184 38 CGTATGC 4450 0.0 51.044945 41 GTATGCC 4450 0.0 51.044945 42 TCGTATG 4450 0.0 51.044945 40 CTCGTAT 4445 0.0 51.023624 39 CCGTCTT 4440 0.0 51.002254 47 ATGCCGT 4455 0.0 50.98765 44 >>END_MODULE