##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779743_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 220588 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.485833318222205 33.0 23.0 34.0 12.0 34.0 2 27.262725080240084 33.0 23.0 34.0 12.0 34.0 3 26.26480588245961 32.0 21.0 34.0 11.0 34.0 4 28.241536257638675 33.0 23.0 34.0 12.0 34.0 5 27.97459063956335 34.0 23.0 34.0 11.0 34.0 6 30.00384880410539 36.0 24.0 38.0 11.0 38.0 7 31.021057355794515 36.0 27.0 38.0 12.0 38.0 8 30.222056503526936 36.0 25.0 38.0 11.0 38.0 9 31.680014325348612 37.0 27.0 38.0 12.0 38.0 10-11 31.32555714726096 37.0 27.0 38.0 11.0 38.0 12-13 30.584249823199812 35.5 25.5 38.0 11.0 38.0 14-15 30.37619680127659 35.5 25.0 38.0 11.0 38.0 16-17 30.148664025241626 35.5 24.0 38.0 11.0 38.0 18-19 30.74312292599779 36.0 26.0 38.0 11.0 38.0 20-21 29.650835494224527 35.0 23.5 38.0 11.0 38.0 22-23 29.694158340435564 35.5 24.0 38.0 11.0 38.0 24-25 30.62271293089379 36.0 25.0 38.0 11.0 38.0 26-27 29.361776252561334 35.0 22.0 38.0 11.0 38.0 28-29 31.159009102943042 37.0 26.5 38.0 11.0 38.0 30-31 31.611760385877744 37.0 27.0 38.0 11.0 38.0 32-33 31.704968085299292 37.0 27.0 38.0 11.0 38.0 34-35 31.753599470506103 37.0 27.0 38.0 11.0 38.0 36-37 30.008642809218998 35.0 24.0 38.0 11.0 38.0 38-39 28.555730592779298 34.0 21.5 37.5 11.0 38.0 40-41 29.40035269370954 34.5 23.0 37.5 11.0 38.0 42-43 30.325124213465827 35.5 25.0 38.0 11.0 38.0 44-45 31.808647795890984 37.0 27.0 38.0 11.0 38.0 46-47 30.555846192902607 35.5 26.0 38.0 11.0 38.0 48-49 30.023838558761128 35.5 23.5 38.0 11.0 38.0 50-51 28.129361071318478 33.5 21.0 37.5 11.0 38.0 52-53 30.956545686982068 36.5 26.0 38.0 11.0 38.0 54-55 30.164338041960576 35.5 24.0 38.0 11.0 38.0 56-57 30.57327007815475 36.5 25.0 38.0 11.0 38.0 58-59 31.48976145574555 37.0 27.0 38.0 11.0 38.0 60-61 31.950663680707926 37.0 28.5 38.0 11.0 38.0 62-63 31.860062650733493 37.0 29.0 38.0 11.0 38.0 64-65 31.614292255245072 37.5 28.5 38.0 11.0 38.0 66-67 29.793379512938145 35.5 23.5 38.0 11.0 38.0 68-69 29.84690010336011 35.5 23.5 38.0 11.0 38.0 70-71 29.501718135166012 35.0 23.0 38.0 11.0 38.0 72-73 28.47432543928047 34.0 21.5 37.5 11.0 38.0 74-75 30.215127296135783 35.5 24.0 38.0 11.0 38.0 76 30.5485747184797 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 13.0 4 3.0 5 3.0 6 2.0 7 0.0 8 0.0 9 0.0 10 1.0 11 23.0 12 90.0 13 518.0 14 1445.0 15 2521.0 16 4133.0 17 6479.0 18 8320.0 19 8548.0 20 7562.0 21 5850.0 22 4515.0 23 3775.0 24 3328.0 25 3335.0 26 3547.0 27 3947.0 28 4906.0 29 5618.0 30 6954.0 31 8755.0 32 11393.0 33 15257.0 34 20737.0 35 27556.0 36 32666.0 37 18787.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.07732061580866 17.669138847081438 11.633452409015902 32.620088128094004 2 19.711861025985094 17.362685186864198 39.378388670281254 23.547065116869458 3 18.526930417477004 16.765720554701772 37.694424422110096 27.012924605711124 4 13.808861063635911 19.07037260350979 32.974435926612664 34.146330406241646 5 13.728307976861842 28.278963497561065 40.40926976988776 17.583458755689342 6 26.09072116343591 33.23662211906359 18.039059241663193 22.63359747583731 7 27.106642247085063 24.282372567864073 20.799862186519665 27.811122998531197 8 22.858256864096333 31.737604729607195 19.16551811686192 26.23862028943455 9 22.44749918392514 15.562547604366909 20.516575387182183 41.47337782452577 10-11 23.708257675192517 22.98239290547663 28.06253952925335 25.246809890077504 12-13 23.257458804007044 19.05590957624064 30.09342065591683 27.593210963835485 14-15 23.596404728711164 22.053793056547317 24.14748319675383 30.20231901798769 16-17 25.37501218492062 21.928549892432656 25.941299286587068 26.755138636059655 18-19 21.57342800016322 22.002783785131687 28.602712150269994 27.821076064435108 20-21 24.697318997780755 21.487007555407455 27.368800451556307 26.446872995255482 22-23 25.977376283635213 20.461088567995827 27.094733978645753 26.466801169723208 24-25 22.09101996218836 24.57960619675654 23.889566435595533 29.439807405459568 26-27 23.833930271569116 23.70494627555878 26.807589427392664 25.65353402547944 28-29 22.735041960039354 24.162272688117444 26.545675463691303 26.5570098881519 30-31 22.303857671704588 23.992509991589607 26.818491978391418 26.885140358314384 32-33 22.463168537237237 23.79293225821808 26.730154987974093 27.01374421657059 34-35 22.677699064890906 23.76877302351941 26.613998299801644 26.939529611788043 36-37 24.406460753754605 20.86143383394729 30.604023802776993 24.12808160952111 38-39 24.044540865019506 19.714456058740986 34.11180101694992 22.129202059289586 40-41 23.1553772216177 23.121599564744287 26.187658686978597 27.53536452665941 42-43 19.995647600739908 23.50726306626528 27.88754488411737 28.609544448877443 44-45 19.934711643090317 21.53200943054044 30.586235038084876 27.947043888284366 46-47 23.426321373194416 20.692219109019522 29.6722976342682 26.209161883517858 48-49 22.95897317319768 21.085812216917617 30.89389426150352 25.061320348381187 50-51 26.43981193922935 19.67701424057089 31.162186546491544 22.720987273708214 52-53 18.685944736502062 23.095825880763414 30.445249964295673 27.772979418438847 54-55 21.9221370377255 21.810606301033246 28.915930306890875 27.35132635435038 56-57 21.942566725151767 22.434249599898447 27.991694209068363 27.631489465881426 58-59 19.08591973630818 23.50420859582745 29.32392699508752 28.085944672776858 60-61 18.789388732215563 22.753425402841884 29.191187805475206 29.265998059467353 62-63 18.988753601635842 23.615396298957876 28.555106445199595 28.840743654206687 64-65 19.54367710564793 24.07652986047355 27.62192979473404 28.75786323914448 66-67 18.179406964091406 26.009475879579252 23.64753355096119 32.16358360536815 68-69 18.797461322352653 26.143209898938135 23.677772058673476 31.381556720035736 70-71 18.42584301501842 26.975573816945307 22.925928024936244 31.672655143100027 72-73 17.907460176048275 27.518480988554366 22.03391751619141 32.540141319205944 74-75 19.071292071026843 26.67020304718121 26.127958034951227 28.13054684684072 76 19.92174571437639 25.882400946668298 27.1650276791665 27.030825659788814 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 2.0 2 3.5 3 4.5 4 6.0 5 4.5 6 2.0 7 1.0 8 1.0 9 1.0 10 1.0 11 3.0 12 5.0 13 4.5 14 5.0 15 8.0 16 12.0 17 14.0 18 17.5 19 28.5 20 48.5 21 61.0 22 86.0 23 150.0 24 232.5 25 276.0 26 369.0 27 554.0 28 787.0 29 928.0 30 1163.5 31 1631.5 32 2269.5 33 2675.0 34 3077.0 35 3930.5 36 5060.5 37 5739.0 38 6313.5 39 7676.5 40 9278.0 41 10663.0 42 11235.0 43 11807.5 44 12773.0 45 13205.0 46 13244.0 47 13134.0 48 12755.0 49 12083.0 50 11680.0 51 10967.0 52 9604.0 53 8445.0 54 7936.0 55 7334.0 56 6330.5 57 5566.5 58 5204.0 59 4861.5 60 4341.5 61 3927.5 62 3691.0 63 3540.5 64 3225.5 65 3015.5 66 2823.0 67 2676.0 68 2590.0 69 2467.5 70 2316.5 71 2202.0 72 2060.5 73 1769.5 74 1527.5 75 1435.0 76 1316.0 77 1033.5 78 753.5 79 637.0 80 572.5 81 412.5 82 261.0 83 205.0 84 160.0 85 90.0 86 51.0 87 37.0 88 31.0 89 18.0 90 10.5 91 6.5 92 3.0 93 4.0 94 3.5 95 1.0 96 0.0 97 0.5 98 1.5 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 4.5333381688940464E-4 4 0.0022666690844470234 5 0.0 6 0.0 7 0.0 8 0.009066676337788094 9 0.009066676337788094 10-11 0.01065334469690101 12-13 0.012013346147569224 14-15 0.009293343246232797 16-17 0.012920013781348032 18-19 0.011333345422235117 20-21 0.007933341795564583 22-23 0.010426677788456308 24-25 0.009520010154677499 26-27 0.008160008704009285 28-29 0.009520010154677499 30-31 0.012466679964458629 32-33 0.010200010880011606 34-35 0.01156001233067982 36-37 0.01156001233067982 38-39 0.012013346147569224 40-41 0.01269334687290333 42-43 0.009066676337788094 44-45 0.01269334687290333 46-47 0.009973343971566902 48-49 0.011333345422235117 50-51 0.009520010154677499 52-53 0.012013346147569224 54-55 0.009520010154677499 56-57 0.008613342520898688 58-59 0.012466679964458629 60-61 0.01360001450668214 62-63 0.012920013781348032 64-65 0.009293343246232797 66-67 0.01269334687290333 68-69 0.03604003844270767 70-71 0.01156001233067982 72-73 0.01065334469690101 74-75 0.01065334469690101 76 0.011333345422235117 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 220588.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 94.6331376733163 #Duplication Level Percentage of deduplicated Percentage of total 1 96.57416935010554 91.391166637947 2 2.382645037038257 4.509543516333704 3 0.5549958105479545 1.5756298484309503 4 0.2215263191937441 0.8385492265009838 5 0.10683871787770034 0.5055241548880508 6 0.05838333055235687 0.33149986547927535 7 0.0394534009959973 0.2613519389694337 8 0.022001942561497873 0.16656902876021001 9 0.01716475171925347 0.14619188813187659 >10 0.022821339407709765 0.2739738945585428 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0013600014506682141 0.0 2 0.0 0.0 0.0 0.0013600014506682141 0.0 3 0.0 0.0 0.0 0.0013600014506682141 0.0 4 0.0 0.0 0.0 0.0022666690844470234 0.0 5 0.0 0.0 0.0 0.004080004352004642 0.0 6 0.0 0.0 0.0 0.004080004352004642 0.0 7 0.0 0.0 0.0 0.004080004352004642 0.0 8 0.0 0.0 0.0 0.0054400058026728565 0.0 9 0.0 0.0 0.0 0.007253341070230475 0.0 10 0.0 0.0 0.0 0.008160008704009285 0.0 11 0.0 0.0 0.0 0.008160008704009285 0.0 12 0.0 0.0 0.0 0.008160008704009285 0.0 13 0.0 0.0 0.0 0.008613342520898688 0.0 14 0.0 0.0 0.0 0.009066676337788094 0.0 15 0.0 0.0 0.0 0.009066676337788094 0.0 16 0.0 0.0 0.0 0.010426677788456308 0.0 17 0.0 0.0 0.0 0.011333345422235117 0.0 18 0.0 0.0 0.0 0.013146680689792736 0.0 19 0.0 0.0 0.0 0.013600014506682141 0.0 20 0.0 0.0 0.0 0.017680018858686784 0.0 21 0.0 0.0 0.0 0.018133352675576187 0.0 22 0.0 0.0 0.0 0.021760023210691426 0.0 23 0.0 0.0 0.0 0.026293361379585472 0.0 24 0.0 0.0 0.0 0.030373365731590114 0.0 25 0.0 0.0 0.0 0.03264003481603714 0.0 26 0.0 0.0 0.0 0.03672003916804178 0.0 27 0.0 0.0 0.0 0.0766134150543094 0.0 28 0.0 0.0 0.0 0.11197345277168295 0.0 29 0.0 0.0 0.0 0.13872014796815782 0.0 30 0.0 0.0 0.0 0.19085353691043938 0.0 31 0.0 0.0 0.0 0.213973561571799 0.0 32 0.0 0.0 0.0 0.2611202785282971 0.0 33 0.0 0.0 0.0 0.32413367907592433 0.0 34 0.0 0.0 0.0 0.3835204090884364 0.0 35 0.0 0.0 0.0 0.518613886521479 0.0 36 0.0 0.0 0.0 0.6201606615047056 0.0 37 0.0 0.0 0.0 0.9637876947068743 0.0 38 0.0 0.0 0.0 1.302881389740149 0.0 39 0.0 0.0 0.0 1.6963751428001523 0.0 40 0.0 0.0 0.0 2.2231490380256407 0.0 41 0.0 0.0 0.0 2.849656372966798 0.0 42 0.0 0.0 0.0 3.4856837180626328 0.0 43 0.0 0.0 0.0 4.177471122635864 0.0 44 0.0 0.0 0.0 4.855205178885524 0.0 45 0.0 0.0 0.0 5.315792336845159 0.0 46 0.0 0.0 0.0 5.90149962826627 0.0 47 0.0 0.0 0.0 6.583767022684825 0.0 48 0.0 0.0 0.0 7.045714182095128 0.0 49 0.0 0.0 0.0 7.465047962717827 0.0 50 0.0 0.0 0.0 8.17134204943152 0.0 51 0.0 0.0 0.0 8.84862277186429 0.0 52 0.0 0.0 0.0 9.430250058933396 0.0 53 0.0 0.0 0.0 10.168730846646236 0.0 54 0.0 0.0 0.0 10.897691624204398 0.0 55 0.0 0.0 0.0 11.302065388869748 0.0 56 0.0 0.0 0.0 11.762652546829383 0.0 57 0.0 0.0 0.0 12.19150633760676 0.0 58 0.0 0.0 0.0 12.581826753948537 0.0 59 0.0 0.0 0.0 13.024280559232597 0.0 60 0.0 0.0 0.0 13.284947503944004 0.0 61 0.0 0.0 0.0 13.581881154006565 0.0 62 0.0 0.0 0.0 13.804468058099262 0.0 63 0.0 0.0 0.0 14.078735017317351 0.0 64 0.0 0.0 0.0 14.368868660126571 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGGAC 50 9.767973E-10 55.99619 10 TAGATCT 250 0.0 54.596287 39 AGATCTC 255 0.0 53.525772 40 CTAGAGT 20 0.0069464953 52.496426 9 AGTATCG 20 0.0069464953 52.496426 35 TCTCGGT 255 0.0 49.408405 43 TCGGTGG 250 0.0 47.596764 45 CGCCGTA 200 0.0 47.246784 53 GCCGTAT 230 0.0 45.64907 54 CCTACGA 185 0.0 45.402317 21 CGGTGTT 85 1.8189894E-12 45.291035 46 GTATCAT 170 0.0 45.291035 57 GTAGATC 195 0.0 44.868744 38 CGGTGGT 290 0.0 44.652138 46 CGTATCA 190 0.0 44.20752 56 CTCGGTG 280 0.0 43.747025 44 CTCGTTG 80 2.910383E-11 43.74702 44 GGTGGTC 260 0.0 43.07399 47 CCGTATC 245 0.0 42.854225 55 GATCTCT 115 0.0 42.6058 41 >>END_MODULE