##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779742_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 117327 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.042769354027634 34.0 31.0 34.0 21.0 34.0 2 28.456263264210286 34.0 23.0 34.0 12.0 34.0 3 27.34474588116972 33.0 23.0 34.0 11.0 34.0 4 29.899059892437375 34.0 31.0 34.0 21.0 34.0 5 29.388273798869825 34.0 27.0 34.0 11.0 34.0 6 31.93673238044099 37.0 28.0 38.0 12.0 38.0 7 32.95452027240107 37.0 32.0 38.0 21.0 38.0 8 32.17577369232998 37.0 31.0 38.0 11.0 38.0 9 33.58855165477682 37.0 34.0 38.0 21.0 38.0 10-11 33.36983388307891 38.0 34.0 38.0 21.0 38.0 12-13 32.2819001593836 37.5 30.0 38.0 16.0 38.0 14-15 32.38740869535572 37.0 31.5 38.0 11.5 38.0 16-17 32.03104570985366 36.5 29.5 38.0 16.0 38.0 18-19 32.60394879269052 37.0 31.5 38.0 16.0 38.0 20-21 31.462459621400022 36.5 28.0 38.0 16.0 38.0 22-23 31.404685196075924 36.0 28.5 38.0 16.0 38.0 24-25 32.74485412564883 37.0 32.5 38.0 16.5 38.0 26-27 31.2308718368321 36.5 27.5 38.0 11.0 38.0 28-29 33.47040749358631 37.5 34.0 38.0 21.0 38.0 30-31 33.903730599094835 38.0 34.0 38.0 21.0 38.0 32-33 34.013347311360555 38.0 35.0 38.0 21.0 38.0 34-35 34.074735568113056 38.0 35.0 38.0 21.0 38.0 36-37 31.79675607490177 37.0 29.0 38.0 16.0 38.0 38-39 29.948677627485573 35.0 24.0 38.0 11.0 38.0 40-41 31.331206798094215 36.5 28.5 38.0 11.0 38.0 42-43 32.43301627076461 37.0 30.5 38.0 16.0 38.0 44-45 34.089242032950644 38.0 35.0 38.0 21.5 38.0 46-47 32.58434972342257 37.5 30.5 38.0 16.5 38.0 48-49 31.993458453723353 36.5 30.0 38.0 16.0 38.0 50-51 29.683129202996753 35.0 23.5 38.0 11.0 38.0 52-53 33.261478602538205 37.0 33.0 38.0 21.0 38.0 54-55 32.276581690488975 37.0 30.0 38.0 16.0 38.0 56-57 32.71010935249346 37.5 30.5 38.0 16.0 38.0 58-59 33.87005548594952 37.5 34.5 38.0 21.0 38.0 60-61 34.313389074978474 38.0 36.0 38.0 22.5 38.0 62-63 34.20883087439379 38.0 35.5 38.0 22.0 38.0 64-65 33.87588534608402 38.0 35.0 38.0 20.5 38.0 66-67 31.72284299436617 37.0 27.0 38.0 11.0 38.0 68-69 31.80452069856043 37.0 29.0 38.0 11.0 38.0 70-71 31.311969964287844 36.5 27.0 38.0 11.0 38.0 72-73 30.088261866407564 35.0 24.5 38.0 11.0 38.0 74-75 32.42525590869962 36.5 30.5 38.0 16.0 38.0 76 32.92110937806302 37.0 33.0 38.0 20.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 25.0 13 133.0 14 445.0 15 769.0 16 1170.0 17 1727.0 18 2201.0 19 2288.0 20 2093.0 21 1638.0 22 1482.0 23 1258.0 24 1281.0 25 1368.0 26 1562.0 27 1918.0 28 2341.0 29 2820.0 30 3691.0 31 4978.0 32 6860.0 33 9709.0 34 13682.0 35 18544.0 36 21526.0 37 11817.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.62282339103531 19.84965097547879 12.847000264218808 28.68052536926709 2 21.065057488898546 17.495546634619483 38.84272162417858 22.59667425230339 3 20.657649134470326 19.371500166202154 34.951886607515746 25.018964091811775 4 14.222642699463892 18.728851841434626 34.191618297578565 32.85688716152293 5 15.013594483793161 30.6919975794148 37.847213343902084 16.447194592889957 6 27.882755035072915 33.77653907455232 16.605725877249057 21.73498001312571 7 26.7142260519744 26.877871248732177 21.52616192351292 24.88174077578051 8 22.808901616848637 32.84495469925934 18.19018640210693 26.155957281785096 9 23.86918612084175 16.32616533278785 20.00306834743921 39.80158019893119 10-11 25.513100250583843 24.165572848303018 26.49625828887033 23.825068612242813 12-13 24.93245374040076 20.182481440759588 28.283344839636232 26.601719979203427 14-15 23.998312408908433 22.77353038942443 23.369301183870718 29.858856017796416 16-17 24.971447079078807 23.467944019228472 25.850621345652286 25.70998755604044 18-19 22.99300246320114 23.082922089544606 27.33812336461343 26.585952082640823 20-21 24.209687454720566 22.975529929172314 27.159136430659608 25.655646185447512 22-23 25.01725945434555 22.076759825104194 27.349203508143905 25.556777212406352 24-25 23.497148993837737 24.56893980072788 24.099312178782377 27.834599026652008 26-27 23.449845304149942 23.70681940218364 27.135271506132437 25.708063787533987 28-29 23.581954707782522 24.567235163261653 25.87085666555865 25.97995346339717 30-31 23.629661197528236 24.298316641806945 25.758363520136374 26.31365864052845 32-33 23.23974873643748 24.91966895940406 25.639025970151796 26.201556334006664 34-35 23.772447944633377 24.320062730658755 25.747270449257204 26.160218875450663 36-37 24.368644898446224 22.367826672462435 29.29462101647532 23.968907412616023 38-39 23.958253428452103 21.67233458624187 32.02885951230322 22.340552473002802 40-41 23.75369693250488 23.430241973288332 25.239288484321598 27.576772609885193 42-43 22.060565769175042 23.74432142644063 26.20113017464011 27.993982629744217 44-45 22.16208614422147 23.500658419027246 27.605442930625223 26.73181250612607 46-47 23.57556231728417 22.47479267346817 28.703111815694598 25.246533193553063 48-49 23.87440177623981 22.907015891550504 28.577090427141354 24.641491905068335 50-51 24.51993147357386 21.35825513308957 30.98008131120714 23.141732082129433 52-53 21.521900329847348 24.044763779863118 27.97480545824917 26.458530432040366 54-55 22.971464125598757 23.255714845814225 27.811397303240543 25.96142372534647 56-57 22.93291399251664 23.387199877266102 27.436992337654587 26.242893792562665 58-59 21.483729096704906 24.509060225354993 27.452141895232092 26.55506878270801 60-61 21.668072992576302 23.385495239799877 27.36454524533995 27.58188652228387 62-63 21.16027138059765 24.261033360039548 27.25440226377785 27.324292995584955 64-65 21.53383279211094 24.89750867234311 26.24502458939545 27.323633946150505 66-67 20.77782607583932 24.427028731664493 23.731962804810486 31.0631823876857 68-69 20.809499859343433 25.07182009598745 23.96958408279131 30.14909596187781 70-71 21.12471980021649 24.588969290956044 23.51206457166722 30.774246337160243 72-73 20.500822487577455 23.969333571982578 22.758188652228387 32.77165528821158 74-75 21.629292490219644 24.824209261295355 24.5953616814544 28.951136567030606 76 22.041814757046545 24.235683176080528 25.271250436813354 28.451251630059577 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.5 14 2.0 15 3.5 16 5.0 17 5.0 18 8.5 19 15.0 20 25.0 21 32.0 22 43.0 23 77.0 24 135.5 25 171.0 26 222.5 27 340.5 28 512.0 29 617.0 30 739.5 31 1005.0 32 1330.5 33 1513.0 34 1764.0 35 2313.5 36 2925.5 37 3239.0 38 3560.5 39 4284.5 40 5049.5 41 5742.5 42 6073.0 43 6280.5 44 6555.0 45 6662.5 46 6703.0 47 6625.0 48 6317.0 49 5844.0 50 5601.0 51 5260.0 52 4612.5 53 4032.5 54 3759.0 55 3487.5 56 3024.0 57 2601.0 58 2370.0 59 2303.5 60 2167.0 61 2029.5 62 1962.0 63 1938.0 64 1889.0 65 1858.5 66 1850.5 67 1848.0 68 1763.0 69 1681.5 70 1594.5 71 1504.0 72 1422.5 73 1252.0 74 1091.5 75 1020.0 76 902.0 77 683.0 78 516.5 79 451.0 80 374.0 81 236.5 82 152.0 83 128.0 84 103.5 85 57.5 86 26.0 87 16.0 88 10.0 89 3.5 90 5.0 91 3.5 92 0.0 93 0.0 94 0.5 95 0.5 96 0.0 97 0.5 98 0.5 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 8.52318733113435E-4 12-13 0.0 14-15 0.0 16-17 8.52318733113435E-4 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.00170463746622687 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 4.261593665567175E-4 46-47 0.0 48-49 4.261593665567175E-4 50-51 0.0 52-53 0.0 54-55 8.52318733113435E-4 56-57 0.0 58-59 8.52318733113435E-4 60-61 0.0 62-63 8.52318733113435E-4 64-65 0.0 66-67 0.0 68-69 0.0170463746622687 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 117327.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 93.9730515880415 #Duplication Level Percentage of deduplicated Percentage of total 1 95.81862651958903 90.04368733020621 2 3.0059191464232193 5.649507900326217 3 0.6696007623221731 1.8877328094328047 4 0.24394553534465108 0.916972255104612 5 0.12895562331782257 0.6059176721306894 6 0.0649767929500757 0.36636405095537733 7 0.02898960534468345 0.1906969175001031 8 0.017993545417946538 0.13527266974499663 9 0.009996413957710872 0.08454541720890435 >10 0.010996055332686156 0.11930297739011254 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0034092749324537404 0.0 2 0.0 0.0 0.0 0.0034092749324537404 0.0 3 0.0 0.0 0.0 0.0034092749324537404 0.0 4 0.0 0.0 0.0 0.004261593665567175 0.0 5 0.0 0.0 0.0 0.004261593665567175 0.0 6 0.0 0.0 0.0 0.004261593665567175 0.0 7 8.523187331134351E-4 0.0 0.0 0.006818549864907481 0.0 8 8.523187331134351E-4 0.0 0.0 0.006818549864907481 0.0 9 8.523187331134351E-4 0.0 0.0 0.007670868598020916 0.0 10 8.523187331134351E-4 0.0 0.0 0.007670868598020916 0.0 11 8.523187331134351E-4 0.0 0.0 0.007670868598020916 0.0 12 8.523187331134351E-4 0.0 0.0 0.007670868598020916 0.0 13 8.523187331134351E-4 0.0 0.0 0.007670868598020916 0.0 14 8.523187331134351E-4 0.0 0.0 0.009375506064247786 0.0 15 8.523187331134351E-4 0.0 0.0 0.009375506064247786 0.0 16 8.523187331134351E-4 0.0 0.0 0.009375506064247786 0.0 17 8.523187331134351E-4 0.0 0.0 0.009375506064247786 0.0 18 8.523187331134351E-4 0.0 0.0 0.011080143530474656 0.0 19 8.523187331134351E-4 0.0 0.0 0.011080143530474656 0.0 20 8.523187331134351E-4 0.0 0.0 0.011932462263588092 0.0 21 8.523187331134351E-4 0.0 0.0 0.011932462263588092 0.0 22 8.523187331134351E-4 0.0 0.0 0.017898693395382137 0.0 23 8.523187331134351E-4 8.523187331134351E-4 0.0 0.01960333086160901 0.0 24 8.523187331134351E-4 8.523187331134351E-4 0.0 0.028978836925856795 0.0 25 8.523187331134351E-4 8.523187331134351E-4 0.0 0.029831155658970227 0.0 26 8.523187331134351E-4 8.523187331134351E-4 0.0 0.0340927493245374 0.0 27 8.523187331134351E-4 8.523187331134351E-4 0.0 0.04517289285501206 0.0 28 8.523187331134351E-4 8.523187331134351E-4 0.0 0.0681854986490748 0.0 29 8.523187331134351E-4 8.523187331134351E-4 0.0 0.08778882951068381 0.0 30 8.523187331134351E-4 8.523187331134351E-4 0.0 0.11335839150408687 0.0 31 8.523187331134351E-4 8.523187331134351E-4 0.0 0.12188157883522122 0.0 32 8.523187331134351E-4 8.523187331134351E-4 0.0 0.1483034595617377 0.0 33 8.523187331134351E-4 8.523187331134351E-4 0.0 0.17387302155514076 0.0 34 8.523187331134351E-4 8.523187331134351E-4 0.0 0.20711345214656474 0.0 35 8.523187331134351E-4 8.523187331134351E-4 0.0 0.2889360505254545 0.0 36 8.523187331134351E-4 8.523187331134351E-4 0.0 0.3426321307116009 0.0 37 8.523187331134351E-4 8.523187331134351E-4 0.0 0.5480409453919388 0.0 38 8.523187331134351E-4 8.523187331134351E-4 0.0 0.7372557041431214 0.0 39 8.523187331134351E-4 8.523187331134351E-4 0.0 0.9742003119486563 0.0 40 8.523187331134351E-4 8.523187331134351E-4 0.0 1.2520562189436362 0.0 41 8.523187331134351E-4 8.523187331134351E-4 0.0 1.5989499433208043 0.0 42 8.523187331134351E-4 8.523187331134351E-4 0.0 1.9074893247078677 0.0 43 8.523187331134351E-4 8.523187331134351E-4 0.0 2.2381889931558807 0.0 44 8.523187331134351E-4 8.523187331134351E-4 0.0 2.5748548927356874 0.0 45 8.523187331134351E-4 8.523187331134351E-4 0.0 2.859529349595575 0.0 46 8.523187331134351E-4 8.523187331134351E-4 0.0 3.189376699310474 0.0 47 8.523187331134351E-4 8.523187331134351E-4 0.0 3.5899665038737885 0.0 48 8.523187331134351E-4 8.523187331134351E-4 0.0 3.8771979169330164 0.0 49 8.523187331134351E-4 8.523187331134351E-4 0.0 4.157610780127336 0.0 50 8.523187331134351E-4 8.523187331134351E-4 0.0 4.572690003153579 0.0 51 8.523187331134351E-4 8.523187331134351E-4 0.0 4.970722851517554 0.0 52 8.523187331134351E-4 8.523187331134351E-4 0.0 5.343186137888124 0.0 53 8.523187331134351E-4 8.523187331134351E-4 0.0 5.815370716032968 0.0 54 8.523187331134351E-4 8.523187331134351E-4 0.0 6.280736744312903 0.0 55 8.523187331134351E-4 8.523187331134351E-4 0.0 6.577343663436379 0.0 56 8.523187331134351E-4 8.523187331134351E-4 0.0 6.904634056951938 0.0 57 8.523187331134351E-4 8.523187331134351E-4 0.0 7.207207207207207 0.0 58 8.523187331134351E-4 8.523187331134351E-4 0.0 7.462902827141238 0.0 59 8.523187331134351E-4 8.523187331134351E-4 0.0 7.7936024955892504 0.0 60 8.523187331134351E-4 8.523187331134351E-4 0.0 8.021171597330538 0.0 61 8.523187331134351E-4 8.523187331134351E-4 0.0 8.253002292737392 0.0 62 8.523187331134351E-4 8.523187331134351E-4 0.0 8.435398501623666 0.0 63 8.523187331134351E-4 8.523187331134351E-4 0.0 8.662115284631842 0.0 64 8.523187331134351E-4 8.523187331134351E-4 0.0 8.894798298771809 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGGTAC 25 2.3821658E-4 55.999996 4 TCGTGTC 25 2.3821658E-4 55.999996 34 CGCCGTA 65 3.6379788E-12 53.846153 53 GGCCGTT 20 0.0069365622 52.5 14 CCCGTGT 20 0.0069365622 52.5 33 TCTCGAC 20 0.0069365622 52.5 37 GCCGTTA 20 0.0069365622 52.5 15 CTTCCGA 55 2.2573658E-9 50.90909 18 GTGTACA 30 5.8577186E-4 46.666668 36 ACTGTGT 30 5.8577186E-4 46.666668 33 CAGTGTA 45 1.6727827E-6 46.666664 34 TCGGTGG 80 2.910383E-11 43.75 45 CTGTGTA 40 4.5694964E-5 43.75 34 GCCGTAT 65 9.893483E-9 43.076923 54 CCTACGA 50 3.4541372E-6 42.0 21 GTAGATC 50 3.4541372E-6 42.0 38 TAGATCT 75 7.4396667E-10 42.0 39 TTCCGAC 60 2.5732697E-7 40.833336 19 TCTCGGT 95 3.6379788E-12 40.526318 43 ATACTGG 35 0.0012511654 40.0 53 >>END_MODULE